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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920636
Clone id YMU001_000139_E11
Library
Length 565
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000139_E11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCCATGATGCCCAGGTTAATATCTACAATTCCAGCATGTACAAAATTTTGCCGCAGTAAA
AATTGCTCAAAAATGACAATAGCCAAAGGACCACTGATTTGTAAGTTCAATACCCATTGT
TTGTATCTACAATTCCAGCACCAAATCTACTTCGCATTCCATTCAAATCGTTAAAAAGCT
GCCTTCAGTAATCTTCGAGTAGCAGTGAGTTGAACATCAGCAAAGGGACATGCCTGCTCC
ACTTGAAGATAACCCTTCGTTCCCAGAACCAGTGTCTCAAAGAACAAACGCGCTGCTTCT
CTGCGTGTTCTTCCTGTCAAAAGCTTTTCCAATTTCAAACTCCTGATATTAGCTGAGGTC
TCAACAGGCTCCATGGTCTCGAACTTTTCTTTCAGATACATAGCAACCGCCCTTGACCGC
GATGACCAGCCATTGTCATTTGAAGAACTCTTTCCAGTCTGTTTGGTTGCAGCCATCTCA
TTCCCAAGTTCATCTGGATCTCTGGAGTCAGCAAGAAAGCCCAGTACTTGTGGTTTGGGC
CCTCCAGTTTCATAGTGATCATCTA
■■Homology search results ■■ -
sp_hit_id Q9FQ19
Definition sp|Q9FQ19|SCC13_ARATH Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana
Align length 79
Score (bit) 56.6
E-value 8.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920636|Adiantum capillus-veneris mRNA, clone:
YMU001_000139_E11.
         (565 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FQ19|SCC13_ARATH Sister chromatid cohesion 1 protein 3 OS=A...    57   8e-08
sp|Q9FQ20|SCC12_ARATH Sister chromatid cohesion 1 protein 2 OS=A...    57   8e-08
sp|Q9S7T7|SCC11_ARATH Sister chromatid cohesion 1 protein 1 OS=A...    45   2e-04
sp|P30776|RAD21_SCHPO Cohesin subunit rad21 OS=Schizosaccharomyc...    35   0.20 
sp|Q12158|SCC1_YEAST Sister chromatid cohesion protein 1 OS=Sacc...    32   2.8  

>sp|Q9FQ19|SCC13_ARATH Sister chromatid cohesion 1 protein 3
           OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2
          Length = 693

 Score = 56.6 bits (135), Expect = 8e-08
 Identities = 31/79 (39%), Positives = 50/79 (63%)
 Frame = -3

Query: 410 AVAMYLKEKFETMEPVETSANIRSLKLEKLLTGRTRREAARLFFETLVLGTKGYLQVEQA 231
           A+A YLK++  +  P  +S     L L ++L G+TR+ AAR+FFETLVL ++G + ++Q 
Sbjct: 615 ALAQYLKQR-SSSSPTTSSHPSGDLSLSEILAGKTRKLAARMFFETLVLKSRGLIDMQQD 673

Query: 230 CPFADVQLTATRRLLKAAF 174
            P+ D+ L    +L+ A F
Sbjct: 674 RPYGDIAL----KLMPALF 688


>sp|Q9FQ20|SCC12_ARATH Sister chromatid cohesion 1 protein 2
           OS=Arabidopsis thaliana GN=SYN2 PE=2 SV=2
          Length = 810

 Score = 56.6 bits (135), Expect = 8e-08
 Identities = 33/76 (43%), Positives = 48/76 (63%)
 Frame = -3

Query: 407 VAMYLKEKFETMEPVETSANIRSLKLEKLLTGRTRREAARLFFETLVLGTKGYLQVEQAC 228
           VA +L++ F      E    +  L+L +   GRT++E+ARLF+ETLVL TKGY++V+Q  
Sbjct: 737 VAKFLEKTFLEQREREEEEKVSLLQLCR---GRTQKESARLFYETLVLKTKGYVEVKQNH 793

Query: 227 PFADVQLTATRRLLKA 180
           P++DV L    R  KA
Sbjct: 794 PYSDVFLMRVSRPQKA 809


>sp|Q9S7T7|SCC11_ARATH Sister chromatid cohesion 1 protein 1
           OS=Arabidopsis thaliana GN=SYN1 PE=2 SV=2
          Length = 627

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 24/66 (36%), Positives = 37/66 (56%)
 Frame = -3

Query: 410 AVAMYLKEKFETMEPVETSANIRSLKLEKLLTGRTRREAARLFFETLVLGTKGYLQVEQA 231
           ++  +LK  FET    +  +      L KL  G  R  AA+LFF++ VL T+G ++V QA
Sbjct: 560 SIKSHLKTHFETPGAPQVES------LNKLAVGMDRNAAAKLFFQSCVLATRGVIKVNQA 613

Query: 230 CPFADV 213
            P+ D+
Sbjct: 614 EPYGDI 619


>sp|P30776|RAD21_SCHPO Cohesin subunit rad21 OS=Schizosaccharomyces
           pombe GN=rad21 PE=1 SV=1
          Length = 628

 Score = 35.4 bits (80), Expect = 0.20
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 338 LKLEKLLTGRTRREAARLFFETLVLGTKGYLQVEQACPFA-DVQLTATRRLL 186
           +  + L  G  R EA +LFF+ LVL TK  + V+Q      ++ LTA R +L
Sbjct: 573 VSFQTLSAGCNREEAVQLFFDVLVLATKDVISVKQDVAIQNEITLTAKRGML 624


>sp|Q12158|SCC1_YEAST Sister chromatid cohesion protein 1
           OS=Saccharomyces cerevisiae GN=MCD1 PE=1 SV=1
          Length = 566

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -3

Query: 308 TRREAARLFFETLVLGTKGYLQVEQACPFADVQLTATRRLLK 183
           T+REA+R FF+ L L T+G + + Q   F ++++ A   L +
Sbjct: 520 TKREASRGFFDILSLATEGCIGLSQTEAFGNIKIDAKPALFE 561
tr_hit_id B8LS19
Definition tr|B8LS19|B8LS19_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 82
Score (bit) 66.2
E-value 1.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920636|Adiantum capillus-veneris mRNA, clone:
YMU001_000139_E11.
         (565 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LS19|B8LS19_PICSI Putative uncharacterized protein OS=Picea...    66   1e-09
tr|Q940G1|Q940G1_ARATH Putative uncharacterized protein At5g1627...    64   6e-09
tr|Q9LF01|Q9LF01_ARATH Putative uncharacterized protein T21H19_1...    64   7e-09
tr|Q8W1Y0|Q8W1Y0_ARATH RAD21-3 OS=Arabidopsis thaliana GN=At5g16...    64   7e-09
tr|A7R8X6|A7R8X6_VITVI Chromosome undetermined scaffold_3075, wh...    63   1e-08
tr|A7R1G0|A7R1G0_VITVI Chromosome undetermined scaffold_351, who...    62   3e-08
tr|A7QWX7|A7QWX7_VITVI Chromosome chr13 scaffold_210, whole geno...    60   1e-07
tr|Q7XYH6|Q7XYH6_ORYSI Putative uncharacterized protein OS=Oryza...    59   2e-07
tr|Q5N861|Q5N861_ORYSJ Putative RAD21-3 (Os01g0897800 protein) O...    59   2e-07
tr|A3A0J2|A3A0J2_ORYSJ Putative uncharacterized protein OS=Oryza...    59   2e-07
tr|Q6WG80|Q6WG80_ORYSA Rad21/Rec8-like protein OS=Oryza sativa P...    57   5e-07
tr|A7R458|A7R458_VITVI Chromosome undetermined scaffold_621, who...    57   5e-07
tr|B3H605|B3H605_ARATH Uncharacterized protein At5g40840.3 OS=Ar...    57   9e-07
tr|Q9AXN6|Q9AXN6_ORYSA RIX4 OS=Oryza sativa PE=2 SV=1                  50   6e-05
tr|Q6YTK0|Q6YTK0_ORYSJ Os08g0266700 protein OS=Oryza sativa subs...    50   6e-05
tr|A9UR71|A9UR71_MONBE Predicted protein OS=Monosiga brevicollis...    50   6e-05
tr|A7Q3M8|A7Q3M8_VITVI Chromosome chr13 scaffold_48, whole genom...    47   0.001
tr|A5AEF8|A5AEF8_VITVI Putative uncharacterized protein OS=Vitis...    47   0.001
tr|Q6UFU8|Q6UFU8_ORYSJ Rad21-3 protein (Fragment) OS=Oryza sativ...    45   0.004
tr|A8N1V9|A8N1V9_COPC7 Putative uncharacterized protein OS=Copri...    45   0.004
tr|Q4PBC2|Q4PBC2_USTMA Putative uncharacterized protein OS=Ustil...    44   0.005
tr|A8NFY2|A8NFY2_COPC7 Putative uncharacterized protein OS=Copri...    44   0.006
tr|Q016T1|Q016T1_OSTTA Rad21/Rec8-like family protein (ISS) OS=O...    43   0.014
tr|Q9UB09|Q9UB09_DROME DNA repair protein Rad21 OS=Drosophila me...    42   0.030
tr|Q9U6D9|Q9U6D9_DROME Mitotic cohesin SCC1 OS=Drosophila melano...    42   0.030
tr|O96689|O96689_DROME Rad21 OS=Drosophila melanogaster GN=Rad21...    42   0.030
tr|Q5KIW3|Q5KIW3_CRYNE Nuclear cohesin complex protein, putative...    40   0.067
tr|Q0UKX9|Q0UKX9_PHANO Putative uncharacterized protein OS=Phaeo...    40   0.088
tr|B4IV39|B4IV39_DROYA GE19751 OS=Drosophila yakuba GN=GE19751 P...    40   0.11 
tr|Q6CFB9|Q6CFB9_YARLI YALI0B08470p OS=Yarrowia lipolytica GN=YA...    40   0.11 

>tr|B8LS19|B8LS19_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 355

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 38/82 (46%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
 Frame = -3

Query: 410 AVAMYLKEKFETMEPVETSA---NIRSLKLEKLLTGRTRREAARLFFETLVLGTKGYLQV 240
           AV+ YLK  FE M+         N   L L++LL G+TR+EAAR+FFETLVL T+ Y+ V
Sbjct: 274 AVSRYLKTVFEGMDQNSKKPQEENQLKLGLDRLLVGKTRKEAARMFFETLVLKTRDYVHV 333

Query: 239 EQACPFADVQLTATRRLLKAAF 174
           EQ   F D+ L    +L+K  F
Sbjct: 334 EQKDSFDDISLFPRTKLMKTNF 355


>tr|Q940G1|Q940G1_ARATH Putative uncharacterized protein At5g16270;
           T21H19_190 OS=Arabidopsis thaliana
           GN=At5g16270/T21H19_190 PE=2 SV=1
          Length = 236

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 35/79 (44%), Positives = 49/79 (62%)
 Frame = -3

Query: 410 AVAMYLKEKFETMEPVETSANIRSLKLEKLLTGRTRREAARLFFETLVLGTKGYLQVEQA 231
           AVA YL+  F+     ET      L  +KLL G+TR+EA+R+FFETLVL T+ Y+QVEQ 
Sbjct: 162 AVAKYLQTLFDK----ETENGKNVLVADKLLAGKTRKEASRMFFETLVLKTRDYIQVEQG 217

Query: 230 CPFADVQLTATRRLLKAAF 174
            P+  + +    +L K+ F
Sbjct: 218 KPYESIIIKPRPKLTKSVF 236


>tr|Q9LF01|Q9LF01_ARATH Putative uncharacterized protein T21H19_190
            OS=Arabidopsis thaliana GN=T21H19_190 PE=4 SV=1
          Length = 1021

 Score = 63.5 bits (153), Expect = 7e-09
 Identities = 35/79 (44%), Positives = 49/79 (62%)
 Frame = -3

Query: 410  AVAMYLKEKFETMEPVETSANIRSLKLEKLLTGRTRREAARLFFETLVLGTKGYLQVEQA 231
            AVA YL+  F+     ET      L  +KLL G+TR+EA+R+FFETLVL T+ Y+QVEQ 
Sbjct: 947  AVAKYLQTLFDK----ETENGKNVLVADKLLAGKTRKEASRMFFETLVLKTRDYIQVEQG 1002

Query: 230  CPFADVQLTATRRLLKAAF 174
             P+  + +    +L K+ F
Sbjct: 1003 KPYESIIIKPRPKLTKSIF 1021


>tr|Q8W1Y0|Q8W1Y0_ARATH RAD21-3 OS=Arabidopsis thaliana GN=At5g16270
            PE=2 SV=1
          Length = 1031

 Score = 63.5 bits (153), Expect = 7e-09
 Identities = 35/79 (44%), Positives = 49/79 (62%)
 Frame = -3

Query: 410  AVAMYLKEKFETMEPVETSANIRSLKLEKLLTGRTRREAARLFFETLVLGTKGYLQVEQA 231
            AVA YL+  F+     ET      L  +KLL G+TR+EA+R+FFETLVL T+ Y+QVEQ 
Sbjct: 957  AVAKYLQTLFDK----ETENGKNVLVADKLLAGKTRKEASRMFFETLVLKTRDYIQVEQG 1012

Query: 230  CPFADVQLTATRRLLKAAF 174
             P+  + +    +L K+ F
Sbjct: 1013 KPYESIIIKPRPKLTKSIF 1031


>tr|A7R8X6|A7R8X6_VITVI Chromosome undetermined scaffold_3075, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00012617001 PE=4 SV=1
          Length = 273

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 33/79 (41%), Positives = 50/79 (63%)
 Frame = -3

Query: 410 AVAMYLKEKFETMEPVETSANIRSLKLEKLLTGRTRREAARLFFETLVLGTKGYLQVEQA 231
           AVA YL+  F+     E     + + +  LL G+TR+EA+R+FFETLVL T+ Y+QVEQ 
Sbjct: 199 AVAKYLQNLFDK----EAEHGKKVIPMNNLLAGKTRKEASRMFFETLVLKTRDYIQVEQE 254

Query: 230 CPFADVQLTATRRLLKAAF 174
            PF ++ +    +L+K+ F
Sbjct: 255 KPFDNINVKPRVKLMKSDF 273


>tr|A7R1G0|A7R1G0_VITVI Chromosome undetermined scaffold_351, whole
            genome shotgun sequence OS=Vitis vinifera
            GN=GSVIVT00012142001 PE=4 SV=1
          Length = 1116

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 32/79 (40%), Positives = 50/79 (63%)
 Frame = -3

Query: 410  AVAMYLKEKFETMEPVETSANIRSLKLEKLLTGRTRREAARLFFETLVLGTKGYLQVEQA 231
            +VA YL+  F+     E     + + +  LL G+TR+EA+R+FFETLVL T+ Y+QVEQ 
Sbjct: 1042 SVAKYLQNLFDK----EAEHGKKVIPMNNLLAGKTRKEASRMFFETLVLKTRDYIQVEQE 1097

Query: 230  CPFADVQLTATRRLLKAAF 174
             PF ++ +    +L+K+ F
Sbjct: 1098 KPFDNINVKPRVKLMKSDF 1116


>tr|A7QWX7|A7QWX7_VITVI Chromosome chr13 scaffold_210, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00008862001
           PE=4 SV=1
          Length = 83

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 34/79 (43%), Positives = 48/79 (60%)
 Frame = -3

Query: 410 AVAMYLKEKFETMEPVETSANIRSLKLEKLLTGRTRREAARLFFETLVLGTKGYLQVEQA 231
           AVA YL +    + P+    ++  L L K+L G+TR+ AAR+FFETLVL   G + V+Q 
Sbjct: 7   AVAQYL-QNHSPINPISEDPSME-LSLNKILEGKTRKIAARMFFETLVLKNYGLVDVQQE 64

Query: 230 CPFADVQLTATRRLLKAAF 174
            P+ D+ L  T +L KA F
Sbjct: 65  EPYGDITLKMTPKLSKARF 83


>tr|Q7XYH6|Q7XYH6_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_04789 PE=2 SV=1
          Length = 1055

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 33/78 (42%), Positives = 50/78 (64%)
 Frame = -3

Query: 407  VAMYLKEKFETMEPVETSANIRSLKLEKLLTGRTRREAARLFFETLVLGTKGYLQVEQAC 228
            VA YLK  F+     E+    +S+ ++ LL+G+TR+EA+R+FFETLVL TK ++ V+Q  
Sbjct: 982  VARYLKTLFDE----ESGLGRKSVAIDHLLSGKTRKEASRMFFETLVLTTKDFISVDQPN 1037

Query: 227  PFADVQLTATRRLLKAAF 174
             F  V +    +LLK+ F
Sbjct: 1038 SFDFVSVKPGPKLLKSDF 1055


>tr|Q5N861|Q5N861_ORYSJ Putative RAD21-3 (Os01g0897800 protein)
            OS=Oryza sativa subsp. japonica GN=P0506A10.9 PE=4 SV=1
          Length = 1055

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 33/78 (42%), Positives = 50/78 (64%)
 Frame = -3

Query: 407  VAMYLKEKFETMEPVETSANIRSLKLEKLLTGRTRREAARLFFETLVLGTKGYLQVEQAC 228
            VA YLK  F+     E+    +S+ ++ LL+G+TR+EA+R+FFETLVL TK ++ V+Q  
Sbjct: 982  VARYLKTLFDE----ESGLGRKSVAIDHLLSGKTRKEASRMFFETLVLTTKDFISVDQPN 1037

Query: 227  PFADVQLTATRRLLKAAF 174
             F  V +    +LLK+ F
Sbjct: 1038 SFDFVSVKPGPKLLKSDF 1055


>tr|A3A0J2|A3A0J2_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_004314 PE=4 SV=1
          Length = 1027

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 33/78 (42%), Positives = 50/78 (64%)
 Frame = -3

Query: 407  VAMYLKEKFETMEPVETSANIRSLKLEKLLTGRTRREAARLFFETLVLGTKGYLQVEQAC 228
            VA YLK  F+     E+    +S+ ++ LL+G+TR+EA+R+FFETLVL TK ++ V+Q  
Sbjct: 954  VARYLKTLFDE----ESGLGRKSVAIDHLLSGKTRKEASRMFFETLVLTTKDFISVDQPN 1009

Query: 227  PFADVQLTATRRLLKAAF 174
             F  V +    +LLK+ F
Sbjct: 1010 SFDFVSVKPGPKLLKSDF 1027