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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920653
Clone id YMU001_000139_G09
Library
Length 481
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000139_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTTTTTTTTTTAAAGATGAGACAATTTATTGCTGCAAACTTACAATTCCTAAACA
GATGTTTATGAGGACAACATAAGCATAACCGGATCTAAATCTCTACAACACATTTACAAG
TAGAAGCCCTAACCGGACCTAGATCTCTACAACACATTTACAAGTAGAAGCCCTCAAAGC
TTCTTTATTCTGACCTTGCTTTTCCCTTAATGGAGATTGCATCGACAGATTATCATGTCA
AAAATTCTCTACGAGAAATTTGTTTGATTCAGAAAAGGAATTCCATAGCTTCCATCAAAG
AATTATGTGGCTAAGCCTTGAACTGTATCTTTCAATTCCACCAAAAAGCTTTGAGTCTCC
GAGAGCAACTTTGTTACAGCAGCCTTGTTTTGCTGCACATTGTCGAGAGCTTCTGCTACA
ACAGGTAGCCAGTCTTCTTCTGCCTGAGGAAACCTTTCCTTCAGTGCTTGCTTCCTGCAA
C
■■Homology search results ■■ -
sp_hit_id Q6DE92
Definition sp|Q6DE92|PXDC2_XENLA Plexin domain-containing protein 2 OS=Xenopus laevis
Align length 79
Score (bit) 34.3
E-value 0.27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920653|Adiantum capillus-veneris mRNA, clone:
YMU001_000139_G09.
         (465 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6DE92|PXDC2_XENLA Plexin domain-containing protein 2 OS=Xeno...    34   0.27 
sp|Q9D0M2|CDCA7_MOUSE Cell division cycle-associated protein 7 O...    32   1.0  
sp|Q5K2P4|K1C13_PROAT Keratin, type I cytoskeletal 13 OS=Protopt...    32   1.8  
sp|Q4KM91|CDCA7_RAT Cell division cycle-associated protein 7 OS=...    32   1.8  
sp|Q4R5E9|SCG2_MACFA Secretogranin-2 OS=Macaca fascicularis GN=S...    31   2.3  
sp|P58994|GSH1_BUCAP Glutamate--cysteine ligase OS=Buchnera aphi...    31   3.1  
sp|Q9UJ42|GP160_HUMAN Probable G-protein coupled receptor 160 OS...    30   6.8  
sp|Q9R1Y5|HIC1_MOUSE Hypermethylated in cancer 1 protein OS=Mus ...    29   8.7  
sp|Q14526|HIC1_HUMAN Hypermethylated in cancer 1 protein OS=Homo...    29   8.7  
sp|A1ATJ6|DNLJ_PELPD DNA ligase OS=Pelobacter propionicus (strai...    29   8.7  

>sp|Q6DE92|PXDC2_XENLA Plexin domain-containing protein 2 OS=Xenopus
           laevis GN=plxdc2 PE=2 SV=1
          Length = 513

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 18/79 (22%), Positives = 42/79 (53%)
 Frame = +2

Query: 170 YSDLAFPLMEIASTDYHVKNSLREICLIQKRNSIASIKELCG*ALNCIFQFHQKALSLRE 349
           Y D+  P+M+I+ST++ VK  L +  ++     +  I+++       IF++H+  L + +
Sbjct: 244 YKDIPVPVMQISSTNHPVKVGLSDAFVV-----VHKIQQIPNVRRRTIFEYHRVELEMTK 298

Query: 350 QLCYSSLVLLHIVESFCYN 406
              +S++ +L +     +N
Sbjct: 299 ITSFSAVEMLPLATCLQFN 317


>sp|Q9D0M2|CDCA7_MOUSE Cell division cycle-associated protein 7
           OS=Mus musculus GN=Cdca7 PE=1 SV=1
          Length = 382

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -3

Query: 445 KERFPQAEEDWLPVVAEALDNVQQNKAAVTKLLSETQSF 329
           +E   + EED +  + +   N++QNKA + KL+SE +SF
Sbjct: 107 EEEEEEEEEDGMNFLEKRALNIKQNKAMLAKLMSELESF 145


>sp|Q5K2P4|K1C13_PROAT Keratin, type I cytoskeletal 13
           OS=Protopterus aethiopicus GN=KRT13 PE=1 SV=1
          Length = 465

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 17/53 (32%), Positives = 32/53 (60%)
 Frame = -3

Query: 454 QALKERFPQAEEDWLPVVAEALDNVQQNKAAVTKLLSETQSFLVELKDTVQGL 296
           + L E+  +  EDW     +A +++ +N A+ T+ +  T++ + ELK T+QGL
Sbjct: 278 EQLAEKNRKDAEDWF---MKASEDLNKNVASSTEAIQTTKTEINELKRTIQGL 327


>sp|Q4KM91|CDCA7_RAT Cell division cycle-associated protein 7
           OS=Rattus norvegicus GN=Cdca7 PE=2 SV=1
          Length = 377

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -3

Query: 430 QAEEDWLPVVAEALDNVQQNKAAVTKLLSETQSF 329
           + EED +  + +   N++QNKA + KL+SE +SF
Sbjct: 108 EEEEDGMNFLEKRALNIKQNKAMLAKLMSELESF 141


>sp|Q4R5E9|SCG2_MACFA Secretogranin-2 OS=Macaca fascicularis GN=SCG2
           PE=2 SV=1
          Length = 617

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = -3

Query: 448 LKERFPQAEEDWLPVVAEALDNVQQNKAAVTK-----LLSETQSFLVELKD 311
           L ER   +EEDW+ ++ EAL  V+    +V K      L+  ++F +++ D
Sbjct: 99  LPERDSLSEEDWMRIILEALRQVENEPQSVPKENKPHALNSEKNFPIDMSD 149


>sp|P58994|GSH1_BUCAP Glutamate--cysteine ligase OS=Buchnera
           aphidicola subsp. Schizaphis graminum GN=gshA PE=3 SV=1
          Length = 518

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 223 QKFSTRNLFDSEKEFHSFHQRIMWLSLELYLSIPPKSFESPRATLLQ 363
           +KFS   + D + EF   +  I+ +  ELY  I PK   +P  +LL+
Sbjct: 270 KKFSKIGIKDKQGEFLQLNTNILQMESELYTPIRPKRQTNPGESLLE 316


>sp|Q9UJ42|GP160_HUMAN Probable G-protein coupled receptor 160
           OS=Homo sapiens GN=GPR160 PE=2 SV=1
          Length = 338

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +1

Query: 202 CIDRLSCQKFS--TRNLFDSEKEFHSFHQRIMWLSLELYLSIPPKSFESPRATLLQQPCF 375
           CID   C  FS  T+  F  +K F+ F   ++W+S+  Y+   P  ++S +A    Q  +
Sbjct: 117 CIDY--CLNFSKTTKLSFKCQKLFYFFTVILIWISVLAYVLGDPAIYQSLKA----QNAY 170

Query: 376 AAHC 387
           + HC
Sbjct: 171 SRHC 174


>sp|Q9R1Y5|HIC1_MOUSE Hypermethylated in cancer 1 protein OS=Mus
           musculus GN=Hic1 PE=1 SV=2
          Length = 892

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -3

Query: 436 FPQAEEDWLPVVAEALDNVQQNKAAVTKLLSETQSFLVELKDTVQGL 296
           FP+       + AE L   QQ+KAA  +LL++T  FL + K  ++ L
Sbjct: 804 FPEGVFAVARLTAEQLSLKQQDKAAAAELLAQTTHFLHDPKVALESL 850


>sp|Q14526|HIC1_HUMAN Hypermethylated in cancer 1 protein OS=Homo
           sapiens GN=HIC1 PE=1 SV=4
          Length = 733

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -3

Query: 436 FPQAEEDWLPVVAEALDNVQQNKAAVTKLLSETQSFLVELKDTVQGL 296
           FP+       + AE L   QQ+KAA  +LL++T  FL + K  ++ L
Sbjct: 645 FPEGVFAVARLTAEQLSLKQQDKAAAAELLAQTTHFLHDPKVALESL 691


>sp|A1ATJ6|DNLJ_PELPD DNA ligase OS=Pelobacter propionicus (strain
           DSM 2379) GN=ligA PE=3 SV=1
          Length = 704

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 13/61 (21%)
 Frame = -3

Query: 454 QALKERFPQAEEDWLPV------VAEALDNVQQN-------KAAVTKLLSETQSFLVELK 314
           Q L+ RFP+ +    P       V+E    VQ +          VTK+LSE +S + ELK
Sbjct: 55  QELESRFPEFQSADSPTQIVGGSVSEGFKKVQHSVPMLSIENKPVTKMLSEVRSIIKELK 114

Query: 313 D 311
           D
Sbjct: 115 D 115
tr_hit_id B4LEK6
Definition tr|B4LEK6|B4LEK6_DROVI GJ13053 OS=Drosophila virilis
Align length 49
Score (bit) 36.2
E-value 0.83
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920653|Adiantum capillus-veneris mRNA, clone:
YMU001_000139_G09.
         (465 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4LEK6|B4LEK6_DROVI GJ13053 OS=Drosophila virilis GN=GJ13053 ...    36   0.83 
tr|B8APX3|B8APX3_ORYSI Putative uncharacterized protein OS=Oryza...    34   3.1  
tr|Q6AV56|Q6AV56_ORYSJ Putative centromere protein (Putative unc...    34   4.1  
tr|Q0DPG9|Q0DPG9_ORYSJ Os03g0691500 protein OS=Oryza sativa subs...    34   4.1  

>tr|B4LEK6|B4LEK6_DROVI GJ13053 OS=Drosophila virilis GN=GJ13053
           PE=4 SV=1
          Length = 739

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = -3

Query: 460 RKQALKERFPQAEEDWLPVVAEALDNVQQNKAAVTKLLSETQSFLVELK 314
           R +AL E  P +EED +P   + L + +Q  + V ++LSE Q  L EL+
Sbjct: 262 RAKALAEELPTSEEDHIPSEEDILSDTEQVLSEVEQVLSEAQHALSELE 310


>tr|B8APX3|B8APX3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13096 PE=4 SV=1
          Length = 806

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -3

Query: 463 CRKQALKERFPQAEEDWLPVVAEALDNVQQNKAAVTKLLSETQSFLVELKDTVQ 302
           CR+Q L E F Q E DW  ++AE        + A++++    +S  V++K  V+
Sbjct: 551 CREQGLMEMFDQEEADWYTLIAE-------KENAISEIQENVESAQVDIKHLVE 597


>tr|Q6AV56|Q6AV56_ORYSJ Putative centromere protein (Putative
            uncharacterized protein) (BHLH family protein, putative,
            expressed) OS=Oryza sativa subsp. japonica
            GN=OSJNBb0101N11.5 PE=4 SV=1
          Length = 1515

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -3

Query: 463  CRKQALKERFPQAEEDWLPVVAEALDNVQQNKAAVTKLLSETQSFLVELKDTVQ 302
            CR+Q L E F Q E DW  ++AE        + A++++    +S  V++K  V+
Sbjct: 881  CREQELMEMFDQEEADWYTLIAE-------KENAISEIQENVESAQVDIKHLVE 927


>tr|Q0DPG9|Q0DPG9_ORYSJ Os03g0691500 protein OS=Oryza sativa subsp.
            japonica GN=Os03g0691500 PE=4 SV=1
          Length = 1051

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -3

Query: 463  CRKQALKERFPQAEEDWLPVVAEALDNVQQNKAAVTKLLSETQSFLVELKDTVQ 302
            CR+Q L E F Q E DW  ++AE        + A++++    +S  V++K  V+
Sbjct: 903  CREQELMEMFDQEEADWYTLIAE-------KENAISEIQENVESAQVDIKHLVE 949