BP920661 |
Clone id |
YMU001_000139_H08 |
Library |
YMU01 |
Length |
379 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000139_H08. |
Accession |
BP920661 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TAGGCATCACATTCATCAACAACCCAGCTTTGACAAATAGGATACGCCATTCTCAACATT AACGTGTCACCTGAACTTGCTCAGGCCCTACTCTGTTACTCCTGGCTTCTCTCCAAAAAG AAACCAAGTTATCTTGTGAGTAGAAAATTTATACATGCCTATCAATCTACACCCGCCCTC TTTGATGAGGGTAACTGACTCCCCTGAGACTTTGTGCTTAATAACTTCCTGGGTCTAGAC TTAGTATTAGTAGTATTTGCGACTGCTCTTAATCCTCTTCTTGTATGTCGAGGTATGACT CTGATCGGAATGCCGGCCAAGTCGAAATCTTCACGCATTGCAGAAGCAACAAAACGTAGG TCAGTCTCCTCAATGTCCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q92UK6 |
Definition |
sp|Q92UK6|ENGA_RHIME GTP-binding protein engA OS=Rhizobium meliloti |
Align length |
50 |
Score (bit) |
34.3 |
E-value |
0.2 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QCF1 |
Definition |
tr|A7QCF1|A7QCF1_VITVI Chromosome undetermined scaffold_77, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
69 |
Score (bit) |
50.8 |
E-value |
3.0e-05 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920661|Adiantum capillus-veneris mRNA, clone: YMU001_000139_H08. (379 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QCF1|A7QCF1_VITVI Chromosome undetermined scaffold_77, whol... 51 3e-05 tr|A5CBU6|A5CBU6_VITVI Putative uncharacterized protein OS=Vitis... 48 2e-04 tr|A2WM96|A2WM96_ORYSI Putative uncharacterized protein OS=Oryza... 48 2e-04 tr|A2ZQV3|A2ZQV3_ORYSJ Putative uncharacterized protein OS=Oryza... 48 3e-04 tr|A7QGU3|A7QGU3_VITVI Chromosome chr16 scaffold_94, whole genom... 47 6e-04 tr|A5B8B3|A5B8B3_VITVI Putative uncharacterized protein OS=Vitis... 47 6e-04 tr|Q0JPF6|Q0JPF6_ORYSJ Os01g0225200 protein (Fragment) OS=Oryza ... 46 0.001 tr|A9TY56|A9TY56_PHYPA Predicted protein OS=Physcomitrella paten... 45 0.002 tr|Q9FLE0|Q9FLE0_ARATH GTP-binding protein-like OS=Arabidopsis t... 41 0.034 tr|Q2RPR6|Q2RPR6_RHORT Small GTP-binding protein domain OS=Rhodo... 39 0.17 tr|A6UI34|A6UI34_SINMW Small GTP-binding protein OS=Sinorhizobiu... 35 2.4 tr|Q6ZCV5|Q6ZCV5_ORYSJ Putative uncharacterized protein P0028A08... 33 7.0 tr|Q0AQE1|Q0AQE1_MARMM Small GTP-binding protein OS=Maricaulis m... 33 9.2 tr|A9DDI8|A9DDI8_9RHIZ GTP-binding protein EngA OS=Hoeflea photo... 33 9.2
>tr|A7QCF1|A7QCF1_VITVI Chromosome undetermined scaffold_77, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00035369001 PE=4 SV=1 Length = 235
Score = 50.8 bits (120), Expect = 3e-05 Identities = 25/69 (36%), Positives = 39/69 (56%) Frame = -3
Query: 374 IEETDLRFVASAMREDFDLAGIPIRVIPRHTRRGLRAVANTTNTKSRPRKLLSTKSQGSQ 195 + TDLRF+ +++EDFDL GIPIR++ R + + + NT +T S R S Sbjct: 165 LSNTDLRFLTKSLKEDFDLGGIPIRIMQRSIPKKVGGIGNTKSTSSAGRTAERISSDKRS 224
Query: 194 LPSSKRAGV 168 + +S+ A V Sbjct: 225 VFTSENANV 233
>tr|A5CBU6|A5CBU6_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039232 PE=4 SV=1 Length = 193
Score = 48.1 bits (113), Expect = 2e-04 Identities = 20/46 (43%), Positives = 31/46 (67%) Frame = -3
Query: 374 IEETDLRFVASAMREDFDLAGIPIRVIPRHTRRGLRAVANTTNTKS 237 + TDLRF+ +++EDFDL GIPIR++ R + + + NT +T S Sbjct: 143 LSNTDLRFLTKSLKEDFDLGGIPIRIMQRSIPKKVGGIGNTKSTSS 188
>tr|A2WM96|A2WM96_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_00968 PE=3 SV=1 Length = 627
Score = 48.1 bits (113), Expect = 2e-04 Identities = 23/66 (34%), Positives = 38/66 (57%) Frame = -3
Query: 374 IEETDLRFVASAMREDFDLAGIPIRVIPRHTRRGLRAVANTTNTKSRPRKLLSTKSQGSQ 195 + +TD+RF+ +++EDFD+ GIPIRV+ R R +N+ NT R + T + ++ Sbjct: 490 LSDTDIRFLTKSLKEDFDIGGIPIRVVQRSIPRKETVKSNSRNTGPRINTRMRTDKRTTK 549
Query: 194 LPSSKR 177 S R Sbjct: 550 GKQSNR 555
>tr|A2ZQV3|A2ZQV3_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_000925 PE=3 SV=1 Length = 739
Score = 47.8 bits (112), Expect = 3e-04 Identities = 23/66 (34%), Positives = 38/66 (57%) Frame = -3
Query: 374 IEETDLRFVASAMREDFDLAGIPIRVIPRHTRRGLRAVANTTNTKSRPRKLLSTKSQGSQ 195 + +TD+RF+ +++EDFD+ GIPIRV+ R R +N+ NT R + T + ++ Sbjct: 602 LSDTDIRFLTKSLKEDFDIGGIPIRVVQRTIPRKETVKSNSRNTGPRINTRMRTDKRTTK 661
Query: 194 LPSSKR 177 S R Sbjct: 662 GKQSNR 667
>tr|A7QGU3|A7QGU3_VITVI Chromosome chr16 scaffold_94, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00038488001 PE=3 SV=1 Length = 605
Score = 46.6 bits (109), Expect = 6e-04 Identities = 21/49 (42%), Positives = 30/49 (61%) Frame = -3
Query: 374 IEETDLRFVASAMREDFDLAGIPIRVIPRHTRRGLRAVANTTNTKSRPR 228 + TDLRF+ +++EDFDL GIPIR++ R + L NT + S R Sbjct: 535 LSNTDLRFLTKSLKEDFDLGGIPIRIMQRSIPKKLGGTGNTKSMSSAGR 583
>tr|A5B8B3|A5B8B3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016760 PE=3 SV=1 Length = 355
Score = 46.6 bits (109), Expect = 6e-04 Identities = 21/49 (42%), Positives = 30/49 (61%) Frame = -3
Query: 374 IEETDLRFVASAMREDFDLAGIPIRVIPRHTRRGLRAVANTTNTKSRPR 228 + TDLRF+ +++EDFDL GIPIR++ R + L NT + S R Sbjct: 285 LSNTDLRFLTKSLKEDFDLGGIPIRIMQRSIPKKLGGTGNTKSMSSAGR 333
>tr|Q0JPF6|Q0JPF6_ORYSJ Os01g0225200 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os01g0225200 PE=4 SV=1 Length = 521
Score = 45.8 bits (107), Expect = 0.001 Identities = 19/45 (42%), Positives = 31/45 (68%) Frame = -3
Query: 374 IEETDLRFVASAMREDFDLAGIPIRVIPRHTRRGLRAVANTTNTK 240 + +TD+RF+ +++EDFD+ GIPIRV+ R R +N+ NT+ Sbjct: 357 LSDTDIRFLTKSLKEDFDIGGIPIRVVQRTIPRKETVKSNSRNTE 401
>tr|A9TY56|A9TY56_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_199389 PE=3 SV=1 Length = 522
Score = 44.7 bits (104), Expect = 0.002 Identities = 19/29 (65%), Positives = 25/29 (86%) Frame = -3
Query: 374 IEETDLRFVASAMREDFDLAGIPIRVIPR 288 +++T+LRF+ASA+REDF L GIPIRV R Sbjct: 485 LDDTELRFIASALREDFGLVGIPIRVFQR 513
>tr|Q9FLE0|Q9FLE0_ARATH GTP-binding protein-like OS=Arabidopsis thaliana PE=3 SV=1 Length = 514
Score = 40.8 bits (94), Expect = 0.034 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 4/39 (10%) Frame = -3
Query: 368 ETDLRFVASAMREDFDLAGIPI----RVIPRHTRRGLRA 264 E+D+RF+ +++EDFDL G PI RVIPR G+RA Sbjct: 438 ESDIRFLTRSLKEDFDLGGTPIRIIQRVIPRAPPSGIRA 476
>tr|Q2RPR6|Q2RPR6_RHORT Small GTP-binding protein domain OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=Rru_A3084 PE=3 SV=1 Length = 500
Score = 38.5 bits (88), Expect = 0.17 Identities = 16/33 (48%), Positives = 26/33 (78%) Frame = -3
Query: 377 DIEETDLRFVASAMREDFDLAGIPIRVIPRHTR 279 D+ E+ +R++ S +REDFD+AG PIR++ R T+ Sbjct: 462 DLPESYVRYLNSGLREDFDMAGTPIRLLFRATK 494
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