BP920661
Clone id YMU001_000139_H08
Library
Length 379
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000139_H08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TAGGCATCACATTCATCAACAACCCAGCTTTGACAAATAGGATACGCCATTCTCAACATT
AACGTGTCACCTGAACTTGCTCAGGCCCTACTCTGTTACTCCTGGCTTCTCTCCAAAAAG
AAACCAAGTTATCTTGTGAGTAGAAAATTTATACATGCCTATCAATCTACACCCGCCCTC
TTTGATGAGGGTAACTGACTCCCCTGAGACTTTGTGCTTAATAACTTCCTGGGTCTAGAC
TTAGTATTAGTAGTATTTGCGACTGCTCTTAATCCTCTTCTTGTATGTCGAGGTATGACT
CTGATCGGAATGCCGGCCAAGTCGAAATCTTCACGCATTGCAGAAGCAACAAAACGTAGG
TCAGTCTCCTCAATGTCCC
■■Homology search results ■■ -
sp_hit_id Q92UK6
Definition sp|Q92UK6|ENGA_RHIME GTP-binding protein engA OS=Rhizobium meliloti
Align length 50
Score (bit) 34.3
E-value 0.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920661|Adiantum capillus-veneris mRNA, clone:
YMU001_000139_H08.
(379 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q92UK6|ENGA_RHIME GTP-binding protein engA OS=Rhizobium melil... 34 0.20
sp|Q3SR12|ENGA_NITWN GTP-binding protein engA OS=Nitrobacter win... 34 0.26
sp|A8LHW1|ENGA_DINSH GTP-binding protein engA OS=Dinoroseobacter... 34 0.26
sp|A7HYV8|ENGA_PARL1 GTP-binding protein engA OS=Parvibaculum la... 32 0.75
sp|A8YV35|ENGA_LACH4 GTP-binding protein engA OS=Lactobacillus h... 32 0.75
sp|Q04AY6|ENGA_LACDB GTP-binding protein engA OS=Lactobacillus d... 32 0.97
sp|Q8KH12|ENGA_LACDA Probable GTP-binding protein engA OS=Lactob... 32 0.97
sp|Q8UD28|ENGA_AGRT5 GTP-binding protein engA OS=Agrobacterium t... 32 0.97
sp|Q11KI3|ENGA_MESSB GTP-binding protein engA OS=Mesorhizobium s... 32 1.3
sp|Q89MZ0|ENGA_BRAJA GTP-binding protein engA OS=Bradyrhizobium ... 31 1.7
sp|A9IQH4|ENGA_BART1 GTP-binding protein engA OS=Bartonella trib... 31 1.7
sp|Q5FKF4|ENGA_LACAC GTP-binding protein engA OS=Lactobacillus a... 31 2.2
sp|Q6G5J7|ENGA_BARHE GTP-binding protein engA OS=Bartonella hens... 31 2.2
sp|A6Q4R8|ENGA_NITSB GTP-binding protein engA OS=Nitratiruptor s... 30 2.8
sp|A4YUE1|ENGA_BRASO GTP-binding protein engA OS=Bradyrhizobium ... 30 2.8
sp|Q1GHZ2|ENGA_SILST GTP-binding protein engA OS=Silicibacter sp... 30 3.7
sp|A5EI59|ENGA_BRASB GTP-binding protein engA OS=Bradyrhizobium ... 30 3.7
sp|A8HVL5|ENGA_AZOC5 GTP-binding protein engA OS=Azorhizobium ca... 30 3.7
sp|Q986D9|ENGA_RHILO GTP-binding protein engA OS=Rhizobium loti ... 30 4.8
sp|Q92GU2|ENGA_RICCN GTP-binding protein engA OS=Rickettsia cono... 29 6.3
sp|Q2W7M7|ENGA_MAGMM GTP-binding protein engA OS=Magnetospirillu... 29 6.3
sp|Q38WW3|ENGA_LACSS GTP-binding protein engA OS=Lactobacillus s... 29 6.3
sp|Q71F56|MD13L_HUMAN Mediator of RNA polymerase II transcriptio... 29 8.2
sp|Q0C441|ENGA_HYPNA GTP-binding protein engA OS=Hyphomonas nept... 29 8.3
sp|Q6G0H5|ENGA_BARQU GTP-binding protein engA OS=Bartonella quin... 29 8.3

>sp|Q92UK6|ENGA_RHIME GTP-binding protein engA OS=Rhizobium meliloti
GN=engA PE=3 SV=1
Length = 476

Score = 34.3 bits (77), Expect = 0.20
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = -3

Query: 374 IEETDLRFVASAMREDFDLAGIPIRVIPRHTRRGLRAVANTTNTKSRPRK 225
+ E+ R++ + +R DFDL G+PIRV RA N +K+R R+
Sbjct: 434 VPESYTRYLINGLRNDFDLPGVPIRV-------HFRASENPFESKARKRR 476


>sp|Q3SR12|ENGA_NITWN GTP-binding protein engA OS=Nitrobacter
winogradskyi (strain Nb-255 / ATCC 25391) GN=engA PE=3
SV=1
Length = 455

Score = 33.9 bits (76), Expect = 0.26
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = -3

Query: 374 IEETDLRFVASAMREDFDLAGIPIRVIPR 288
+ E+ LR++ +++RE FDLAG PIR+ R
Sbjct: 413 VPESYLRYLVNSLRETFDLAGTPIRITLR 441


>sp|A8LHW1|ENGA_DINSH GTP-binding protein engA OS=Dinoroseobacter
shibae (strain DFL 12) GN=engA PE=3 SV=1
Length = 490

Score = 33.9 bits (76), Expect = 0.26
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -3

Query: 374 IEETDLRFVASAMREDFDLAGIPIRVIPRHTRRGLRAVANTTNTKSRPRKLLSTKS 207
I E+ R++ + +REDFD+ G PIR+ R +T SR RK L S
Sbjct: 432 IPESYTRYLVNGLREDFDMPGTPIRLTMRSQSDANPYKNRKKSTPSRLRKHLGKPS 487


>sp|A7HYV8|ENGA_PARL1 GTP-binding protein engA OS=Parvibaculum
lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)
GN=engA PE=3 SV=1
Length = 473

Score = 32.3 bits (72), Expect = 0.75
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3

Query: 377 DIEETDLRFVASAMREDFDLAGIPIRVIPRHT 282
D+ + R++ + +RE FDL G+PIR+ R T
Sbjct: 431 DVPTSYRRYLVNGLRETFDLPGVPIRLFMRKT 462


>sp|A8YV35|ENGA_LACH4 GTP-binding protein engA OS=Lactobacillus
helveticus (strain DPC 4571) GN=engA PE=3 SV=1
Length = 435

Score = 32.3 bits (72), Expect = 0.75
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = -3

Query: 356 RFVASAMREDFDLAGIPIRVIPR 288
RF+ + +R++FD AG PI+++PR
Sbjct: 410 RFLINQLRQNFDFAGTPIKILPR 432


>sp|Q04AY6|ENGA_LACDB GTP-binding protein engA OS=Lactobacillus
delbrueckii subsp. bulgaricus (strain ATCC BAA-365)
GN=engA PE=3 SV=1
Length = 435

Score = 32.0 bits (71), Expect = 0.97
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = -3

Query: 356 RFVASAMREDFDLAGIPIRVIPR 288
RF+ + +RE+FD G PI+++PR
Sbjct: 410 RFLINQLRENFDFTGTPIKILPR 432


>sp|Q8KH12|ENGA_LACDA Probable GTP-binding protein engA
OS=Lactobacillus delbrueckii subsp. bulgaricus (strain
ATCC 11842 / DSM 20081) GN=engA PE=3 SV=1
Length = 435

Score = 32.0 bits (71), Expect = 0.97
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = -3

Query: 356 RFVASAMREDFDLAGIPIRVIPR 288
RF+ + +RE+FD G PI+++PR
Sbjct: 410 RFLINQLRENFDFTGTPIKILPR 432


>sp|Q8UD28|ENGA_AGRT5 GTP-binding protein engA OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=engA PE=3 SV=1
Length = 476

Score = 32.0 bits (71), Expect = 0.97
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = -3

Query: 374 IEETDLRFVASAMREDFDLAGIPIRV 297
I E+ R++ + +R+DFD+ G+PIRV
Sbjct: 434 IPESYTRYLVNGLRKDFDMPGVPIRV 459


>sp|Q11KI3|ENGA_MESSB GTP-binding protein engA OS=Mesorhizobium sp.
(strain BNC1) GN=engA PE=3 SV=1
Length = 470

Score = 31.6 bits (70), Expect = 1.3
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3

Query: 359 LRFVASAMREDFDLAGIPIRVIPRHTRRGLRAVANTTNTKSRPR 228
+R++ + +RE FD+ G+PIR+ LRA N K+R R
Sbjct: 433 IRYLVNGLRESFDIFGVPIRI-------SLRASENPYAGKARKR 469


>sp|Q89MZ0|ENGA_BRAJA GTP-binding protein engA OS=Bradyrhizobium
japonicum GN=engA PE=3 SV=1
Length = 460

Score = 31.2 bits (69), Expect = 1.7
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -3

Query: 374 IEETDLRFVASAMREDFDLAGIPIRVIPR 288
+ ++ LR++ ++MRE FDL G P+R+ R
Sbjct: 418 VPQSYLRYLTNSMREAFDLPGTPVRITLR 446


tr_hit_id A7QCF1
Definition tr|A7QCF1|A7QCF1_VITVI Chromosome undetermined scaffold_77, whole genome shotgun sequence OS=Vitis vinifera
Align length 69
Score (bit) 50.8
E-value 3.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920661|Adiantum capillus-veneris mRNA, clone:
YMU001_000139_H08.
(379 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7QCF1|A7QCF1_VITVI Chromosome undetermined scaffold_77, whol... 51 3e-05
tr|A5CBU6|A5CBU6_VITVI Putative uncharacterized protein OS=Vitis... 48 2e-04
tr|A2WM96|A2WM96_ORYSI Putative uncharacterized protein OS=Oryza... 48 2e-04
tr|A2ZQV3|A2ZQV3_ORYSJ Putative uncharacterized protein OS=Oryza... 48 3e-04
tr|A7QGU3|A7QGU3_VITVI Chromosome chr16 scaffold_94, whole genom... 47 6e-04
tr|A5B8B3|A5B8B3_VITVI Putative uncharacterized protein OS=Vitis... 47 6e-04
tr|Q0JPF6|Q0JPF6_ORYSJ Os01g0225200 protein (Fragment) OS=Oryza ... 46 0.001
tr|A9TY56|A9TY56_PHYPA Predicted protein OS=Physcomitrella paten... 45 0.002
tr|Q9FLE0|Q9FLE0_ARATH GTP-binding protein-like OS=Arabidopsis t... 41 0.034
tr|Q2RPR6|Q2RPR6_RHORT Small GTP-binding protein domain OS=Rhodo... 39 0.17
tr|A6UI34|A6UI34_SINMW Small GTP-binding protein OS=Sinorhizobiu... 35 2.4
tr|Q6ZCV5|Q6ZCV5_ORYSJ Putative uncharacterized protein P0028A08... 33 7.0
tr|Q0AQE1|Q0AQE1_MARMM Small GTP-binding protein OS=Maricaulis m... 33 9.2
tr|A9DDI8|A9DDI8_9RHIZ GTP-binding protein EngA OS=Hoeflea photo... 33 9.2

>tr|A7QCF1|A7QCF1_VITVI Chromosome undetermined scaffold_77, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00035369001 PE=4 SV=1
Length = 235

Score = 50.8 bits (120), Expect = 3e-05
Identities = 25/69 (36%), Positives = 39/69 (56%)
Frame = -3

Query: 374 IEETDLRFVASAMREDFDLAGIPIRVIPRHTRRGLRAVANTTNTKSRPRKLLSTKSQGSQ 195
+ TDLRF+ +++EDFDL GIPIR++ R + + + NT +T S R S
Sbjct: 165 LSNTDLRFLTKSLKEDFDLGGIPIRIMQRSIPKKVGGIGNTKSTSSAGRTAERISSDKRS 224

Query: 194 LPSSKRAGV 168
+ +S+ A V
Sbjct: 225 VFTSENANV 233


>tr|A5CBU6|A5CBU6_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_039232 PE=4 SV=1
Length = 193

Score = 48.1 bits (113), Expect = 2e-04
Identities = 20/46 (43%), Positives = 31/46 (67%)
Frame = -3

Query: 374 IEETDLRFVASAMREDFDLAGIPIRVIPRHTRRGLRAVANTTNTKS 237
+ TDLRF+ +++EDFDL GIPIR++ R + + + NT +T S
Sbjct: 143 LSNTDLRFLTKSLKEDFDLGGIPIRIMQRSIPKKVGGIGNTKSTSS 188


>tr|A2WM96|A2WM96_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_00968 PE=3 SV=1
Length = 627

Score = 48.1 bits (113), Expect = 2e-04
Identities = 23/66 (34%), Positives = 38/66 (57%)
Frame = -3

Query: 374 IEETDLRFVASAMREDFDLAGIPIRVIPRHTRRGLRAVANTTNTKSRPRKLLSTKSQGSQ 195
+ +TD+RF+ +++EDFD+ GIPIRV+ R R +N+ NT R + T + ++
Sbjct: 490 LSDTDIRFLTKSLKEDFDIGGIPIRVVQRSIPRKETVKSNSRNTGPRINTRMRTDKRTTK 549

Query: 194 LPSSKR 177
S R
Sbjct: 550 GKQSNR 555


>tr|A2ZQV3|A2ZQV3_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_000925 PE=3 SV=1
Length = 739

Score = 47.8 bits (112), Expect = 3e-04
Identities = 23/66 (34%), Positives = 38/66 (57%)
Frame = -3

Query: 374 IEETDLRFVASAMREDFDLAGIPIRVIPRHTRRGLRAVANTTNTKSRPRKLLSTKSQGSQ 195
+ +TD+RF+ +++EDFD+ GIPIRV+ R R +N+ NT R + T + ++
Sbjct: 602 LSDTDIRFLTKSLKEDFDIGGIPIRVVQRTIPRKETVKSNSRNTGPRINTRMRTDKRTTK 661

Query: 194 LPSSKR 177
S R
Sbjct: 662 GKQSNR 667


>tr|A7QGU3|A7QGU3_VITVI Chromosome chr16 scaffold_94, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00038488001
PE=3 SV=1
Length = 605

Score = 46.6 bits (109), Expect = 6e-04
Identities = 21/49 (42%), Positives = 30/49 (61%)
Frame = -3

Query: 374 IEETDLRFVASAMREDFDLAGIPIRVIPRHTRRGLRAVANTTNTKSRPR 228
+ TDLRF+ +++EDFDL GIPIR++ R + L NT + S R
Sbjct: 535 LSNTDLRFLTKSLKEDFDLGGIPIRIMQRSIPKKLGGTGNTKSMSSAGR 583


>tr|A5B8B3|A5B8B3_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_016760 PE=3 SV=1
Length = 355

Score = 46.6 bits (109), Expect = 6e-04
Identities = 21/49 (42%), Positives = 30/49 (61%)
Frame = -3

Query: 374 IEETDLRFVASAMREDFDLAGIPIRVIPRHTRRGLRAVANTTNTKSRPR 228
+ TDLRF+ +++EDFDL GIPIR++ R + L NT + S R
Sbjct: 285 LSNTDLRFLTKSLKEDFDLGGIPIRIMQRSIPKKLGGTGNTKSMSSAGR 333


>tr|Q0JPF6|Q0JPF6_ORYSJ Os01g0225200 protein (Fragment) OS=Oryza
sativa subsp. japonica GN=Os01g0225200 PE=4 SV=1
Length = 521

Score = 45.8 bits (107), Expect = 0.001
Identities = 19/45 (42%), Positives = 31/45 (68%)
Frame = -3

Query: 374 IEETDLRFVASAMREDFDLAGIPIRVIPRHTRRGLRAVANTTNTK 240
+ +TD+RF+ +++EDFD+ GIPIRV+ R R +N+ NT+
Sbjct: 357 LSDTDIRFLTKSLKEDFDIGGIPIRVVQRTIPRKETVKSNSRNTE 401


>tr|A9TY56|A9TY56_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_199389 PE=3 SV=1
Length = 522

Score = 44.7 bits (104), Expect = 0.002
Identities = 19/29 (65%), Positives = 25/29 (86%)
Frame = -3

Query: 374 IEETDLRFVASAMREDFDLAGIPIRVIPR 288
+++T+LRF+ASA+REDF L GIPIRV R
Sbjct: 485 LDDTELRFIASALREDFGLVGIPIRVFQR 513


>tr|Q9FLE0|Q9FLE0_ARATH GTP-binding protein-like OS=Arabidopsis
thaliana PE=3 SV=1
Length = 514

Score = 40.8 bits (94), Expect = 0.034
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 4/39 (10%)
Frame = -3

Query: 368 ETDLRFVASAMREDFDLAGIPI----RVIPRHTRRGLRA 264
E+D+RF+ +++EDFDL G PI RVIPR G+RA
Sbjct: 438 ESDIRFLTRSLKEDFDLGGTPIRIIQRVIPRAPPSGIRA 476


>tr|Q2RPR6|Q2RPR6_RHORT Small GTP-binding protein domain
OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
GN=Rru_A3084 PE=3 SV=1
Length = 500

Score = 38.5 bits (88), Expect = 0.17
Identities = 16/33 (48%), Positives = 26/33 (78%)
Frame = -3

Query: 377 DIEETDLRFVASAMREDFDLAGIPIRVIPRHTR 279
D+ E+ +R++ S +REDFD+AG PIR++ R T+
Sbjct: 462 DLPESYVRYLNSGLREDFDMAGTPIRLLFRATK 494