BP920670 |
Clone id |
YMU001_000140_A06 |
Library |
YMU01 |
Length |
420 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000140_A06. |
Accession |
BP920670 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CTCTAATACCAGTTGTAGTGTGTACAATGGAGCTTTCTCAATGGTAGCATTGACATCACT ATGGAATTAGGAATGCTACTCTAGATTATACACAAGCTCTTGTTGGTCTTCAAATGTTGC ATATTTGATATAGTCACATTTTTCTAAGCTTCTTCTAATGTACATTAGCCATTGCCAATC TACAAGTCAGCCTCGGCTATTTTTGAGCTTCCACAAGAATTTAGTCATGCATGCTTTTTT CATCCAATGCGTACAATCCCACCTGCTCCTTTTTCCTTAGTAGGAGCTATATAAAATGTG ACACATTGAAACAAAGACTGGACCATCTCTTTCATCCATCTGTGCTGCATGCTCAAATGC CCATCGTGCGAGGTGCACATCTCCCCTCTTCTGACATGCAGCAAGCACACTATGCCATAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9LFI1 |
Definition |
sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana |
Align length |
55 |
Score (bit) |
37.7 |
E-value |
0.019 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QIK1 |
Definition |
tr|A7QIK1|A7QIK1_VITVI Chromosome chr9 scaffold_104, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
71 |
Score (bit) |
40.0 |
E-value |
0.057 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920670|Adiantum capillus-veneris mRNA, clone: YMU001_000140_A06. (420 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QIK1|A7QIK1_VITVI Chromosome chr9 scaffold_104, whole genom... 40 0.057 tr|A7QD49|A7QD49_VITVI Chromosome undetermined scaffold_80, whol... 40 0.075 tr|A5AE49|A5AE49_VITVI Putative uncharacterized protein OS=Vitis... 40 0.075 tr|A7PJW3|A7PJW3_VITVI Chromosome chr12 scaffold_18, whole genom... 39 0.098 tr|A2Q4A7|A2Q4A7_MEDTR Tetratricopeptide-like helical OS=Medicag... 38 0.28 tr|A9S537|A9S537_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.37 tr|Q6F382|Q6F382_ORYSJ Os03g0795200 protein OS=Oryza sativa subs... 37 0.49 tr|A3ANL0|A3ANL0_ORYSJ Putative uncharacterized protein OS=Oryza... 37 0.49 tr|A2XMV7|A2XMV7_ORYSI Putative uncharacterized protein OS=Oryza... 37 0.49 tr|A7PEI5|A7PEI5_VITVI Chromosome chr11 scaffold_13, whole genom... 37 0.63 tr|Q5W965|Q5W965_PHYPA PPR868-14 OS=Physcomitrella patens PE=2 SV=1 36 0.83 tr|A9SDQ1|A9SDQ1_PHYPA Predicted protein OS=Physcomitrella paten... 36 0.83 tr|A7R1T6|A7R1T6_VITVI Chromosome undetermined scaffold_376, who... 36 0.83 tr|A7P8G3|A7P8G3_VITVI Chromosome chr3 scaffold_8, whole genome ... 36 0.83 tr|A7P600|A7P600_VITVI Chromosome chr4 scaffold_6, whole genome ... 36 0.83 tr|A5AMS4|A5AMS4_VITVI Putative uncharacterized protein OS=Vitis... 36 0.83 tr|Q6DT52|Q6DT52_ARALP AT1G74600 (Fragment) OS=Arabidopsis lyrat... 36 1.1 tr|B8AVS1|B8AVS1_ORYSI Putative uncharacterized protein OS=Oryza... 36 1.1 tr|A7PL13|A7PL13_VITVI Chromosome chr7 scaffold_20, whole genome... 36 1.1 tr|A7NWP9|A7NWP9_VITVI Chromosome chr5 scaffold_2, whole genome ... 36 1.1 tr|A5AZY0|A5AZY0_VITVI Putative uncharacterized protein OS=Vitis... 36 1.1 tr|Q7XRD1|Q7XRD1_ORYSJ cDNA clone:J023003J09, full insert sequen... 35 1.4 tr|Q0JEQ5|Q0JEQ5_ORYSJ Os04g0221300 protein (Fragment) OS=Oryza ... 35 1.4 tr|A7NWE8|A7NWE8_VITVI Chromosome chr5 scaffold_2, whole genome ... 35 1.4 tr|A3AR81|A3AR81_ORYSJ Putative uncharacterized protein OS=Oryza... 35 1.4 tr|Q2QUQ5|Q2QUQ5_ORYSJ Pentatricopeptide, putative, expressed OS... 35 1.8 tr|Q0IP37|Q0IP37_ORYSJ Os12g0256900 protein OS=Oryza sativa subs... 35 1.8 tr|A7P5J4|A7P5J4_VITVI Chromosome chr4 scaffold_6, whole genome ... 35 1.8 tr|A3CGD4|A3CGD4_ORYSJ Putative uncharacterized protein OS=Oryza... 35 1.8 tr|Q6YWP8|Q6YWP8_ORYSJ Os02g0730900 protein OS=Oryza sativa subs... 35 2.4
>tr|A7QIK1|A7QIK1_VITVI Chromosome chr9 scaffold_104, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00000293001 PE=4 SV=1 Length = 724
Score = 40.0 bits (92), Expect = 0.057 Identities = 19/71 (26%), Positives = 38/71 (53%) Frame = -1
Query: 420 IWHSVLAACQKRGDVHLARWAFEHAAQMDERDGPVFVSMCHILYSSY*GKRSRWDCTHWM 241 +W S+L AC+ D +A A + +++ +G V+V +C+I + +RW+ H + Sbjct: 523 VWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAAC-----NRWEKLHEV 577
Query: 240 KKACMTKFLWK 208 +K M + + K Sbjct: 578 RKLMMDRGIKK 588
>tr|A7QD49|A7QD49_VITVI Chromosome undetermined scaffold_80, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00035690001 PE=4 SV=1 Length = 920
Score = 39.7 bits (91), Expect = 0.075 Identities = 20/61 (32%), Positives = 32/61 (52%) Frame = -1
Query: 417 WHSVLAACQKRGDVHLARWAFEHAAQMDERDGPVFVSMCHILYSSY*GKRSRWDCTHWMK 238 W S+LAAC+ G++ LAR EH ++D D +V LYS+ +W+ ++ Sbjct: 720 WRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYV-----LYSNVCATSGKWEDVENLR 774
Query: 237 K 235 K Sbjct: 775 K 775
>tr|A5AE49|A5AE49_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016374 PE=4 SV=1 Length = 1166
Score = 39.7 bits (91), Expect = 0.075 Identities = 20/61 (32%), Positives = 32/61 (52%) Frame = -1
Query: 417 WHSVLAACQKRGDVHLARWAFEHAAQMDERDGPVFVSMCHILYSSY*GKRSRWDCTHWMK 238 W S+LAAC+ G++ LAR EH ++D D +V LYS+ +W+ ++ Sbjct: 874 WRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYV-----LYSNVCATSGKWEDVENLR 928
Query: 237 K 235 K Sbjct: 929 K 929
>tr|A7PJW3|A7PJW3_VITVI Chromosome chr12 scaffold_18, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00018905001 PE=4 SV=1 Length = 497
Score = 39.3 bits (90), Expect = 0.098 Identities = 18/46 (39%), Positives = 29/46 (63%) Frame = -1
Query: 420 IWHSVLAACQKRGDVHLARWAFEHAAQMDERDGPVFVSMCHILYSS 283 IW S+L+AC+K G+V LA+ A +H +D D +V + +I +S Sbjct: 392 IWSSLLSACRKHGNVELAKRAAKHIVDLDGNDSCGYVLLSNIYAAS 437
>tr|A2Q4A7|A2Q4A7_MEDTR Tetratricopeptide-like helical OS=Medicago truncatula GN=MtrDRAFT_AC157375g3v1 PE=4 SV=1 Length = 558
Score = 37.7 bits (86), Expect = 0.28 Identities = 22/70 (31%), Positives = 35/70 (50%) Frame = -1
Query: 417 WHSVLAACQKRGDVHLARWAFEHAAQMDERDGPVFVSMCHILYSSY*GKRSRWDCTHWMK 238 W S+LAAC+ G+V L A H ++D D +V +L ++Y +W+C +K Sbjct: 482 WGSLLAACRVYGNVELGEIAARHLFEIDPTDSGNYV----LLANTY-ASNDKWECAEEVK 536
Query: 237 KACMTKFLWK 208 K K + K Sbjct: 537 KLMSKKGMKK 546
>tr|A9S537|A9S537_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_181369 PE=4 SV=1 Length = 833
Score = 37.4 bits (85), Expect = 0.37 Identities = 16/42 (38%), Positives = 25/42 (59%) Frame = -1
Query: 420 IWHSVLAACQKRGDVHLARWAFEHAAQMDERDGPVFVSMCHI 295 IW S+L AC+ G++ +A A E +D DG V+V + H+ Sbjct: 632 IWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHM 673
>tr|Q6F382|Q6F382_ORYSJ Os03g0795200 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0021G19.15 PE=4 SV=1 Length = 611
Score = 37.0 bits (84), Expect = 0.49 Identities = 18/72 (25%), Positives = 37/72 (51%) Frame = -1
Query: 420 IWHSVLAACQKRGDVHLARWAFEHAAQMDERDGPVFVSMCHILYSSY*GKRSRWDCTHWM 241 +W ++L+AC GDV + + FE ++D+ G +V ++S+ RW+ + + Sbjct: 409 LWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYV-----IFSNLCANTGRWEEMNMV 463
Query: 240 KKACMTKFLWKL 205 +K K + K+ Sbjct: 464 RKLMSEKGVVKV 475
>tr|A3ANL0|A3ANL0_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_012382 PE=4 SV=1 Length = 611
Score = 37.0 bits (84), Expect = 0.49 Identities = 18/72 (25%), Positives = 37/72 (51%) Frame = -1
Query: 420 IWHSVLAACQKRGDVHLARWAFEHAAQMDERDGPVFVSMCHILYSSY*GKRSRWDCTHWM 241 +W ++L+AC GDV + + FE ++D+ G +V ++S+ RW+ + + Sbjct: 409 LWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYV-----IFSNLCANTGRWEEMNMV 463
Query: 240 KKACMTKFLWKL 205 +K K + K+ Sbjct: 464 RKLMSEKGVVKV 475
>tr|A2XMV7|A2XMV7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_13880 PE=4 SV=1 Length = 671
Score = 37.0 bits (84), Expect = 0.49 Identities = 18/72 (25%), Positives = 37/72 (51%) Frame = -1
Query: 420 IWHSVLAACQKRGDVHLARWAFEHAAQMDERDGPVFVSMCHILYSSY*GKRSRWDCTHWM 241 +W ++L+AC GDV + + FE ++D+ G +V ++S+ RW+ + + Sbjct: 409 LWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYV-----IFSNLCANTGRWEEMNMV 463
Query: 240 KKACMTKFLWKL 205 +K K + K+ Sbjct: 464 RKLMSEKGVVKV 475
>tr|A7PEI5|A7PEI5_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016678001 PE=4 SV=1 Length = 506
Score = 36.6 bits (83), Expect = 0.63 Identities = 14/45 (31%), Positives = 26/45 (57%) Frame = -1
Query: 420 IWHSVLAACQKRGDVHLARWAFEHAAQMDERDGPVFVSMCHILYS 286 +W ++ AC+K G+V + W EH +++ + VFV + +I S Sbjct: 430 VWGCLMGACEKYGNVKMGEWVAEHLLELEPWNDGVFVVLSNIYAS 474
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