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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920680
Clone id YMU001_000140_B04
Library
Length 369
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000140_B04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCCTCGAGTTAATGATGATGATGATGGTGGGATCGTGTCGCATACGAGTAAAAGGTTTTA
CTGATATTGGGGCACGACACACGTGTATGCCGGCTTTTGGCATTGTGAGTTGGACTCTGG
GCTCGACTAGTGTCCGGAGGAGGCGTTGCCGATCTTCGACCTTTACTATAACCTATAGCT
ATTAATGGCATGCCCACCTGGCATGGCGTAGAAGCCCTGGAGCTCTAACCTATACGGCTG
AGCGCTTCCAAAGCCTGGCGGACGCTGATGGTCGTTGCGCACACTTGGTTGCCATTGGTT
AACAAGATTGGCTATGCCGGTACCCTATAGTATTCTACAATGGTGTGCTTGATGCGGAGG
TGGATTGGA
■■Homology search results ■■ -
sp_hit_id P67207
Definition sp|P67207|Y2306_MYCBO UPF0089 protein Mb2306 OS=Mycobacterium bovis
Align length 40
Score (bit) 32.7
E-value 0.58
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920680|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_B04.
         (369 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P67207|Y2306_MYCBO UPF0089 protein Mb2306 OS=Mycobacterium bo...    33   0.58 
sp|P67206|Y2285_MYCTU UPF0089 protein Rv2285/MT2343 OS=Mycobacte...    33   0.58 
sp|Q96AX9|MIB2_HUMAN E3 ubiquitin-protein ligase MIB2 OS=Homo sa...    30   4.9  
sp|A3GFK8|SEC31_PICST Protein transport protein SEC31 OS=Pichia ...    29   8.3  

>sp|P67207|Y2306_MYCBO UPF0089 protein Mb2306 OS=Mycobacterium bovis
           GN=Mb2306 PE=3 SV=1
          Length = 445

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 351 QAHHCRIL*GTGIANLVNQWQPSVRNDHQRPPGFGSAQPY 232
           +AHHC +  G G  NL+  W   +  D + PPG G  +P+
Sbjct: 132 KAHHCAVD-GLGGVNLIKSW---LTTDPEAPPGSGKPEPF 167


>sp|P67206|Y2285_MYCTU UPF0089 protein Rv2285/MT2343
           OS=Mycobacterium tuberculosis GN=Rv2285 PE=3 SV=1
          Length = 445

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 351 QAHHCRIL*GTGIANLVNQWQPSVRNDHQRPPGFGSAQPY 232
           +AHHC +  G G  NL+  W   +  D + PPG G  +P+
Sbjct: 132 KAHHCAVD-GLGGVNLIKSW---LTTDPEAPPGSGKPEPF 167


>sp|Q96AX9|MIB2_HUMAN E3 ubiquitin-protein ligase MIB2 OS=Homo
           sapiens GN=MIB2 PE=1 SV=3
          Length = 1013

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 164 KGRRSATPPPDTSRAQSPTHNAKSRHTRVSCPNI 63
           K  R AT  PD SRA  PT +  +  +R + PN+
Sbjct: 26  KAARRATGRPDRSRAARPTMDPSAHRSRAAPPNM 59


>sp|A3GFK8|SEC31_PICST Protein transport protein SEC31 OS=Pichia
            stipitis GN=SEC31 PE=3 SV=1
          Length = 1244

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -2

Query: 188  PLIAIGYSKGRRSATPPPDTSRAQSPTHNAKSRHTRVSCPNISKTFYSYATR 33
            P  AIG+     SA PPP  ++   PT +   +  R   P  S   Y Y T+
Sbjct: 1101 PPPAIGHQPAA-SAPPPPPAAKTPVPTKSKYPKGDRSHIPEKSVLIYQYLTK 1151
tr_hit_id Q7UV95
Definition tr|Q7UV95|Q7UV95_RHOBA Excitatory amino acid transporter OS=Rhodopirellula baltica
Align length 42
Score (bit) 36.6
E-value 0.64
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920680|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_B04.
         (369 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7UV95|Q7UV95_RHOBA Excitatory amino acid transporter OS=Rhod...    37   0.64 
tr|Q2IMD5|Q2IMD5_ANADE Glycosyl transferase, family 2 OS=Anaerom...    32   3.4  
tr|A5U4W8|A5U4W8_MYCTA Putative uncharacterized protein OS=Mycob...    33   9.2  
tr|A1KKX6|A1KKX6_MYCBP Putative uncharacterized protein BCG_2300...    33   9.2  
tr|A4KJ40|A4KJ40_MYCTU Putative uncharacterized protein OS=Mycob...    33   9.2  
tr|A2VK15|A2VK15_MYCTU Putative uncharacterized protein OS=Mycob...    33   9.2  
tr|A1QTS5|A1QTS5_MYCTF Putative uncharacterized protein OS=Mycob...    33   9.2  
tr|Q3JME3|Q3JME3_BURP1 Putative uncharacterized protein OS=Burkh...    33   9.3  
tr|Q0IQJ2|Q0IQJ2_ORYSJ Os12g0117800 protein OS=Oryza sativa subs...    33   9.3  

>tr|Q7UV95|Q7UV95_RHOBA Excitatory amino acid transporter
           OS=Rhodopirellula baltica GN=RB2788 PE=4 SV=1
          Length = 482

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 224 SSRASTPCQVGM-PLIAIGYSKGRRSATPPPDTSRAQSPTHN 102
           S  +  PC+VG  PL  +   + RR+   P DTS  +SP HN
Sbjct: 26  SHSSRVPCEVGKKPLFCVAVKRQRRAMDAPRDTSMTESPKHN 67


>tr|Q2IMD5|Q2IMD5_ANADE Glycosyl transferase, family 2
           OS=Anaeromyxobacter dehalogenans (strain 2CP-C)
           GN=Adeh_0190 PE=4 SV=1
          Length = 334

 Score = 32.3 bits (72), Expect(2) = 3.4
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +3

Query: 198 LAWRRSPGALTYTAERFQSLADADGRCAHL 287
           LAWR SPG LT T  R+        +CAHL
Sbjct: 205 LAWRESPGRLTRTDPRYALARHVALKCAHL 234



 Score = 20.8 bits (42), Expect(2) = 3.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 115 LWARLVSGGG 144
           LW RL +GGG
Sbjct: 186 LWLRLAAGGG 195


>tr|A5U4W8|A5U4W8_MYCTA Putative uncharacterized protein
           OS=Mycobacterium tuberculosis (strain ATCC 25177 /
           H37Ra) GN=MRA_2303 PE=4 SV=1
          Length = 445

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 351 QAHHCRIL*GTGIANLVNQWQPSVRNDHQRPPGFGSAQPY 232
           +AHHC +  G G  NL+  W   +  D + PPG G  +P+
Sbjct: 132 KAHHCAVD-GLGGVNLIKSW---LTTDPEAPPGSGKPEPF 167


>tr|A1KKX6|A1KKX6_MYCBP Putative uncharacterized protein BCG_2300
           OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2)
           GN=BCG_2300 PE=4 SV=1
          Length = 445

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 351 QAHHCRIL*GTGIANLVNQWQPSVRNDHQRPPGFGSAQPY 232
           +AHHC +  G G  NL+  W   +  D + PPG G  +P+
Sbjct: 132 KAHHCAVD-GLGGVNLIKSW---LTTDPEAPPGSGKPEPF 167


>tr|A4KJ40|A4KJ40_MYCTU Putative uncharacterized protein
           OS=Mycobacterium tuberculosis str. Haarlem GN=TBHG_02224
           PE=4 SV=1
          Length = 445

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 351 QAHHCRIL*GTGIANLVNQWQPSVRNDHQRPPGFGSAQPY 232
           +AHHC +  G G  NL+  W   +  D + PPG G  +P+
Sbjct: 132 KAHHCAVD-GLGGVNLIKSW---LTTDPEAPPGSGKPEPF 167


>tr|A2VK15|A2VK15_MYCTU Putative uncharacterized protein
           OS=Mycobacterium tuberculosis C GN=TBCG_02228 PE=4 SV=1
          Length = 445

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 351 QAHHCRIL*GTGIANLVNQWQPSVRNDHQRPPGFGSAQPY 232
           +AHHC +  G G  NL+  W   +  D + PPG G  +P+
Sbjct: 132 KAHHCAVD-GLGGVNLIKSW---LTTDPEAPPGSGKPEPF 167


>tr|A1QTS5|A1QTS5_MYCTF Putative uncharacterized protein
           OS=Mycobacterium tuberculosis (strain F11) GN=TBFG_02270
           PE=4 SV=1
          Length = 445

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 351 QAHHCRIL*GTGIANLVNQWQPSVRNDHQRPPGFGSAQPY 232
           +AHHC +  G G  NL+  W   +  D + PPG G  +P+
Sbjct: 132 KAHHCAVD-GLGGVNLIKSW---LTTDPEAPPGSGKPEPF 167


>tr|Q3JME3|Q3JME3_BURP1 Putative uncharacterized protein
           OS=Burkholderia pseudomallei (strain 1710b)
           GN=BURPS1710b_A0101 PE=4 SV=1
          Length = 239

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
 Frame = -2

Query: 311 PILLTNGNQVCATTISVRQALEALSRIG*SSRASTPCQVGMPLIAIGYSKGRRSA---TP 141
           PI     NQ C+T  S   A  + SR   +  +S           I   +G RSA   +P
Sbjct: 65  PIAHRQRNQPCSTITSTSSAWSSSSRRTRACHSSRNSATSPGGAVIARQRGSRSAIRGSP 124

Query: 140 PPDTSRAQSPT-----HNAKSRHTRVSCPNIS 60
              +SRA +PT       AK   +R+  PN+S
Sbjct: 125 GTRSSRADTPTLAPVSTRAKRSCSRIGSPNVS 156


>tr|Q0IQJ2|Q0IQJ2_ORYSJ Os12g0117800 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0117800 PE=4 SV=1
          Length = 465

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -2

Query: 167 SKGRRSATPPPDTSRAQSPTHNAKSRHTRVSCP 69
           S+ RRSA PPP +S + SPT  A  + TR + P
Sbjct: 350 SRARRSAPPPPSSSSSSSPT--ATGQRTRATMP 380