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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920687
Clone id YMU001_000140_B11
Library
Length 512
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000140_B11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTGTTTTTTGCGCTTAACCGCATTTTCAAATTGAAAACGGCACGATTGTAAGCT
GAGACATAGTTTTCCTGAACACCAAGGCAGCCCACATTCAGACATAGCCCTTGAAATCAG
TAAAACTTGATATGTTGAAAAAGATTAAGATGTTACAATTAGAATCTCTCTTTTGGCTCC
TACAATTGAACTCCATTCAAATTGGCTCCTCTTCCCTACACGAGCATACACTCATTGATC
ACCCACCTGCAATTCAGGCAAGAAGCGCAGGAGTTGTGCATCCTTGAGAAGCTTCCCCAT
CACATGCTTGGGTAAACAGACCGCAACATTCCTGCTCGACTTGCCTTCTGCAGCAGGTAA
AATTATTACTTGTCCCTCTCCTTTCAAGGGTTGCACAGAAAATGATACCTTAACTGGCCC
TCCGAAGTCAAAGACGACGTCATTGCAGAATAAGTGATCGAAAACTGCAATTGTCAGACC
ATCTGAATAGAAAAACGGGGGGTTCCTCAAGA
■■Homology search results ■■ -
sp_hit_id Q2SKR0
Definition sp|Q2SKR0|AMPA_HAHCH Probable cytosol aminopeptidase OS=Hahella chejuensis (strain KCTC 2396)
Align length 137
Score (bit) 33.5
E-value 0.56
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920687|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_B11.
         (497 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2SKR0|AMPA_HAHCH Probable cytosol aminopeptidase OS=Hahella ...    33   0.56 
sp|O93632|EF2_METBU Elongation factor 2 OS=Methanococcoides burt...    31   2.8  
sp|P36166|PXL1_YEAST Paxillin-like protein 1 OS=Saccharomyces ce...    30   4.7  
sp|Q5UR35|YR553_MIMIV Uncharacterized protein R553 OS=Acanthamoe...    30   8.0  

>sp|Q2SKR0|AMPA_HAHCH Probable cytosol aminopeptidase OS=Hahella
           chejuensis (strain KCTC 2396) GN=pepA PE=3 SV=1
          Length = 494

 Score = 33.5 bits (75), Expect = 0.56
 Identities = 29/137 (21%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
 Frame = -3

Query: 390 SFSVQPLKGEGQVIILPAAEGKSSRNVAVCLP---KHVMGKLLKDAQLLR-------FLP 241
           + S  P+K +   +++   EGK+   V   L    K V+GKLL    +         F P
Sbjct: 5   ALSTDPIKQKSDCLVVGVVEGKTQSAVWTELDQQCKGVLGKLLSSGDISSKLATTSWFYP 64

Query: 240 ELQVGDQ*VYARVGKRSQFEWSSIVGAKREILIVTS*SFSTYQVLLISR-AMSECGLPWC 64
           +     + ++  +GK  +   +    A + ++   S S +   V+ +S   ++     W 
Sbjct: 65  QEGGVKRLLFVGLGKEKELSEAGFRKAAKSVMQSLSKSGAANAVVALSSLTLNSLKAGWA 124

Query: 63  SGKLCLSLQSCRFQFEN 13
           + +L ++L+S  + F+N
Sbjct: 125 TEQLVIALESACYTFDN 141


>sp|O93632|EF2_METBU Elongation factor 2 OS=Methanococcoides
           burtonii (strain DSM 6242) GN=fusA PE=3 SV=1
          Length = 730

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = -3

Query: 414 DFGGPVKVSFSVQPLKGEGQVIILPAAEGKSSRNVAV---CLPKHVMGKLLKDAQLLRFL 244
           DFGG V  +        +G V+++ A EG   +   V    L +HV   L  + ++ R +
Sbjct: 100 DFGGDVTRAMRAV----DGAVVVIDAVEGTMPQTETVLRQALKEHVKPVLFIN-KVDRLI 154

Query: 243 PELQVGDQ*VYARVGK 196
            ELQV DQ +  R+GK
Sbjct: 155 NELQVDDQEMQIRLGK 170


>sp|P36166|PXL1_YEAST Paxillin-like protein 1 OS=Saccharomyces
           cerevisiae GN=PXL1 PE=1 SV=2
          Length = 706

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = +2

Query: 248 KRRSCASLRSFPITCLGKQTATFLLDLPSAAGKIITCPSPFKGCTENDTLTGPPKSKTTS 427
           ++R+ ++  S P+T     TA+      S  G+    P P    +E  ++T P  S  TS
Sbjct: 58  RQRNVSAAPSVPVTMKSAYTASSKSAYSSVKGESDIYPPPVLENSERRSVTPPKNSNFTS 117

Query: 428 LQNK*SKTAIVRPSE 472
            +      +I RPSE
Sbjct: 118 SRPSDISRSISRPSE 132


>sp|Q5UR35|YR553_MIMIV Uncharacterized protein R553 OS=Acanthamoeba
           polyphaga mimivirus GN=MIMI_R553 PE=1 SV=1
          Length = 518

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 365 PFKGCTENDTLTGPPKSKTTSLQNK*SKT 451
           P  G   ++T+TGP K  TTS+ NK S++
Sbjct: 334 PSAGLGTSETITGPSKKSTTSVYNKLSQS 362
tr_hit_id B6TJD6
Definition tr|B6TJD6|B6TJD6_MAIZE Transferase OS=Zea mays
Align length 90
Score (bit) 58.9
E-value 1.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920687|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_B11.
         (497 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6TJD6|B6TJD6_MAIZE Transferase OS=Zea mays PE=2 SV=1               59   1e-07
tr|B4FPA3|B4FPA3_MAIZE Putative uncharacterized protein OS=Zea m...    57   5e-07
tr|B4F9V8|B4F9V8_MAIZE Putative uncharacterized protein OS=Zea m...    57   5e-07
tr|Q84MN3|Q84MN3_ORYSJ Os03g0745200 protein OS=Oryza sativa subs...    56   1e-06
tr|Q10D12|Q10D12_ORYSJ Transferase family protein, expressed OS=...    56   1e-06
tr|A3AML9|A3AML9_ORYSJ Putative uncharacterized protein OS=Oryza...    56   1e-06
tr|A2XLX6|A2XLX6_ORYSI Putative uncharacterized protein OS=Oryza...    56   1e-06
tr|A7P5L2|A7P5L2_VITVI Chromosome chr4 scaffold_6, whole genome ...    54   4e-06
tr|A5BAG4|A5BAG4_VITVI Putative uncharacterized protein OS=Vitis...    54   4e-06
tr|A7Q5Z0|A7Q5Z0_VITVI Chromosome chr14 scaffold_54, whole genom...    45   0.002
tr|A5BUQ6|A5BUQ6_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|Q9M0F6|Q9M0F6_ARATH Putative uncharacterized protein AT4g2925...    44   0.004
tr|Q8LF47|Q8LF47_ARATH Putative uncharacterized protein OS=Arabi...    44   0.004
tr|B6U4R0|B6U4R0_MAIZE AER OS=Zea mays PE=2 SV=1                       36   1.2  
tr|Q5N7V3|Q5N7V3_ORYSJ cDNA clone:J023050J22, full insert sequen...    35   1.5  
tr|A2ZZN6|A2ZZN6_ORYSJ Putative uncharacterized protein OS=Oryza...    35   1.5  
tr|A2WX34|A2WX34_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.5  
tr|A1VRA5|A1VRA5_POLNA Glutamate racemase OS=Polaromonas naphtha...    34   4.4  
tr|Q4IX52|Q4IX52_AZOVI Regulatory protein, LysR:LysR substrate b...    33   5.7  
tr|A7NUL5|A7NUL5_VITVI Chromosome chr18 scaffold_1, whole genome...    33   5.7  
tr|A4R1R7|A4R1R7_MAGGR Putative uncharacterized protein OS=Magna...    33   7.5  
tr|Q0V6M8|Q0V6M8_PHANO Putative uncharacterized protein OS=Phaeo...    33   9.8  
tr|A8NIA9|A8NIA9_COPC7 Putative uncharacterized protein OS=Copri...    33   9.8  

>tr|B6TJD6|B6TJD6_MAIZE Transferase OS=Zea mays PE=2 SV=1
          Length = 455

 Score = 58.9 bits (141), Expect = 1e-07
 Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
 Frame = -3

Query: 489 NPPF-FYSDGLTIAVFDHLFCNDVVFDFGG-PVKVSFSVQPLKGEGQVIILPAAEGKSSR 316
           N PF  Y   LT A  DH+      F+ G  P +VS  V    GEG V++LPA EG+ +R
Sbjct: 360 NAPFQMYGPELTCAALDHVPMYGAEFEAGASPARVSCRVGGATGEGLVLVLPAPEGREAR 419

Query: 315 NVAVCLPKHVMGKLLKDAQLLRFLPELQVG 226
           +V V LP     ++ +DA++LR   E+  G
Sbjct: 420 DVVVTLPAXATARVCRDAEVLRHGAEVVFG 449


>tr|B4FPA3|B4FPA3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 456

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
 Frame = -3

Query: 489 NPPF-FYSDGLTIAVFDHLFCNDVVFDFGG-PVKVSFSVQPLKGEGQVIILPAAEGKSSR 316
           N PF  Y   LT A  DH+      F+ G  P +VS  V    GEG V++LPA EG  +R
Sbjct: 360 NAPFQMYGPELTCAALDHVPMYGAEFEAGASPARVSCRVGGATGEGLVLVLPAPEGGEAR 419

Query: 315 NVAVCLPKHVMGKLLKDAQLLRFLPELQVG 226
           +V V LP     ++ +DA++LR   E+  G
Sbjct: 420 DVVVTLPAGATARVCRDAEVLRHGAEVVFG 449


>tr|B4F9V8|B4F9V8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 372

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
 Frame = -3

Query: 489 NPPF-FYSDGLTIAVFDHLFCNDVVFDFGG-PVKVSFSVQPLKGEGQVIILPAAEGKSSR 316
           N PF  Y   LT A  DH+      F+ G  P +VS  V    GEG V++LPA EG  +R
Sbjct: 276 NAPFQMYGPELTCAALDHVPMYGAEFEAGASPARVSCRVGGATGEGLVLVLPAPEGGEAR 335

Query: 315 NVAVCLPKHVMGKLLKDAQLLRFLPELQVG 226
           +V V LP     ++ +DA++LR   E+  G
Sbjct: 336 DVVVTLPAGATARVCRDAEVLRHGAEVVFG 365


>tr|Q84MN3|Q84MN3_ORYSJ Os03g0745200 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0036F07.20 PE=4 SV=1
          Length = 466

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
 Frame = -3

Query: 483 PF-FYSDGLTIAVFDHLFCNDVVFDFGG-PVKVSFSVQPLKGEGQVIILPAAEGKSSRNV 310
           PF  Y   LT    DH+      F  G  P + +  V    GEG VI+LP+AEG+S+R+V
Sbjct: 371 PFQMYGPELTCMALDHVPLYGAEFAAGAAPARAACRVGGASGEGLVIVLPSAEGESARDV 430

Query: 309 AVCLPKHVMGKLLKDAQLLRFLPELQVG 226
           AV LP  V  ++ +D ++LR+  ++  G
Sbjct: 431 AVTLPAAVTARICRDGEVLRYGADVVFG 458


>tr|Q10D12|Q10D12_ORYSJ Transferase family protein, expressed
           OS=Oryza sativa subsp. japonica GN=LOC_Os03g53360 PE=4
           SV=1
          Length = 472

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
 Frame = -3

Query: 483 PF-FYSDGLTIAVFDHLFCNDVVFDFGG-PVKVSFSVQPLKGEGQVIILPAAEGKSSRNV 310
           PF  Y   LT    DH+      F  G  P + +  V    GEG VI+LP+AEG+S+R+V
Sbjct: 377 PFQMYGPELTCMALDHVPLYGAEFAAGAAPARAACRVGGASGEGLVIVLPSAEGESARDV 436

Query: 309 AVCLPKHVMGKLLKDAQLLRFLPELQVG 226
           AV LP  V  ++ +D ++LR+  ++  G
Sbjct: 437 AVTLPAAVTARICRDGEVLRYGADVVFG 464


>tr|A3AML9|A3AML9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_012041 PE=4 SV=1
          Length = 376

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
 Frame = -3

Query: 483 PF-FYSDGLTIAVFDHLFCNDVVFDFGG-PVKVSFSVQPLKGEGQVIILPAAEGKSSRNV 310
           PF  Y   LT    DH+      F  G  P + +  V    GEG VI+LP+AEG+S+R+V
Sbjct: 281 PFQMYGPELTCMALDHVPLYGAEFAAGAAPARAACRVGGASGEGLVIVLPSAEGESARDV 340

Query: 309 AVCLPKHVMGKLLKDAQLLRFLPELQVG 226
           AV LP  V  ++ +D ++LR+  ++  G
Sbjct: 341 AVTLPAAVTARICRDGEVLRYGADVVFG 368


>tr|A2XLX6|A2XLX6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13481 PE=4 SV=1
          Length = 466

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
 Frame = -3

Query: 483 PF-FYSDGLTIAVFDHLFCNDVVFDFGG-PVKVSFSVQPLKGEGQVIILPAAEGKSSRNV 310
           PF  Y   LT    DH+      F  G  P + +  V    GEG VI+LP+AEG+S+R+V
Sbjct: 371 PFQMYGPELTCMALDHVPLYGAEFAAGAAPARAACRVGGASGEGLVIVLPSAEGESARDV 430

Query: 309 AVCLPKHVMGKLLKDAQLLRFLPELQVG 226
           AV LP  V  ++ +D ++LR+  ++  G
Sbjct: 431 AVTLPAAVTARICRDGEVLRYGADVVFG 458


>tr|A7P5L2|A7P5L2_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032576001
           PE=4 SV=1
          Length = 449

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 11/84 (13%)
 Frame = -3

Query: 444 DHLFCNDVV--------FDFG-GPVKVSFSVQPLKGEGQVIILPAA--EGKSSRNVAVCL 298
           +HL C ++         F+ G  PV+VS+ ++P+  +GQV+ILPA   EG  SR V V L
Sbjct: 362 EHLICTNLEDVEPYSAKFEEGYAPVRVSYHIEPVSTKGQVLILPAPPEEGPLSRVVMVTL 421

Query: 297 PKHVMGKLLKDAQLLRFLPELQVG 226
           P++   KL KD ++L F P + +G
Sbjct: 422 PENEAVKLCKDVRVLSFSPTILMG 445


>tr|A5BAG4|A5BAG4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_032203 PE=4 SV=1
          Length = 417

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 11/84 (13%)
 Frame = -3

Query: 444 DHLFCNDVV--------FDFG-GPVKVSFSVQPLKGEGQVIILPAA--EGKSSRNVAVCL 298
           +HL C ++         F+ G  PV+VS+ ++P+  +GQV+ILPA   EG  SR V V L
Sbjct: 330 EHLICTNLEDVEPYSAKFEEGYAPVRVSYHIEPVSTKGQVLILPAPPEEGPLSRVVMVTL 389

Query: 297 PKHVMGKLLKDAQLLRFLPELQVG 226
           P++   KL KD ++L F P + +G
Sbjct: 390 PENEAVKLCKDVRVLSFSPTILMG 413


>tr|A7Q5Z0|A7Q5Z0_VITVI Chromosome chr14 scaffold_54, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00031153001
           PE=4 SV=1
          Length = 443

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 23/60 (38%), Positives = 35/60 (58%)
 Frame = -3

Query: 420 VFDFGGPVKVSFSVQPLKGEGQVIILPAAEGKSSRNVAVCLPKHVMGKLLKDAQLLRFLP 241
           +F    PV ++  V  ++GEG +++LP+ E   +R V V LP+  M KL KD  +LR  P
Sbjct: 376 MFKDAKPVHIACHVGNVEGEGLIMVLPSHEEGLARTVMVTLPEEQMAKLCKDQAILRLEP 435