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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920695
Clone id YMU001_000140_C11
Library
Length 524
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000140_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CATTGATAACAAATGACATCAGATTGCTTTCCTTTGCTCTTGCTCCTGTCCCTTTGCGTT
GGCATTCCCTCTAACCATGTGAGCCGAAGCATTGACCTCACCACTTGCCTTTTGTCTAAT
TTCCTCATTGAGAGAACCCCTTACTCCATCAAAGGTAAGATTTGGGTTATTAGACAATGA
GACCACCAGGGCCTCCCAAGAATCAGACAAGGTCTAAGCAAAAAAAGGCCTTTTAACTTA
TCATCAAAAGCGGGCAAACTAGAGTCCTGCAAGTGGGAAAGAACACCTGTAAAAGCACCA
ATGTTCTCAGCTGCAGACTTTGCAGTATCCAATTACATATGCGCATCAAGTACACCTGGT
TCACCGGCGTCCTGTTTTCATAAGTGGCCTTGAGCTTTGCCCACACAGCATAGGCAGTGT
CAAGACCCTTGAGGTCTACCAAAATTTCATCCGCAACAACCATTTTTACATACACAATAG
CCTTTTTGTTTAAATTAAGCCACGCCTCATCATAGCTGCAGGCT
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 56
Score (bit) 41.6
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920695|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_C11.
         (524 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    42   0.002
sp|Q6A6K7|RPOC_PROAC DNA-directed RNA polymerase subunit beta' O...    32   2.4  
sp|Q9DE66|KERA_COTJA Keratocan OS=Coturnix coturnix japonica GN=...    30   5.3  
sp|O42235|KERA_CHICK Keratocan OS=Gallus gallus GN=KERA PE=1 SV=1      30   5.3  
sp|O15015|ZN646_HUMAN Zinc finger protein 646 OS=Homo sapiens GN...    30   7.0  
sp|P42811|PRS2_METTM Putative 26S protease regulatory subunit ho...    30   7.0  
sp|O43557|TNF14_HUMAN Tumor necrosis factor ligand superfamily m...    30   9.1  

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
           transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 15/56 (26%), Positives = 38/56 (67%)
 Frame = -2

Query: 508 EAWLNLNKKAIVYVKMVVADEILVDLKGLDTAYAVWAKLKATYENRTPVNQVYLMR 341
           E W +L+++A   +++ ++D+++ ++   DTA  +W +L++ Y ++T  N++YL +
Sbjct: 50  EDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKK 105


>sp|Q6A6K7|RPOC_PROAC DNA-directed RNA polymerase subunit beta'
            OS=Propionibacterium acnes GN=rpoC PE=3 SV=1
          Length = 1293

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -1

Query: 476  CVCKNGCCG*NFGRPQGS*HCLCCVGKAQGHL*KQDAGEPG 354
            C    GCC   +GR   + H L  VG+A G +  Q  GEPG
Sbjct: 950  CTAAQGCCARCYGRSLSTGH-LVDVGEAVGIIAAQSIGEPG 989


>sp|Q9DE66|KERA_COTJA Keratocan OS=Coturnix coturnix japonica
           GN=KERA PE=2 SV=1
          Length = 353

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +2

Query: 299 QCSQLQTLQYPITYAH--QVHLVHRRPVFISGLELCPHSIGSVKTLEVYQNFIR 454
           Q S  Q  + P   AH   +HL H R   ++G ++CP SI   +   +Y N  R
Sbjct: 269 QLSHNQLTKIPPINAHLEHLHLDHNRIKSVNGTQICPVSIAVAEDYGLYGNIPR 322


>sp|O42235|KERA_CHICK Keratocan OS=Gallus gallus GN=KERA PE=1 SV=1
          Length = 353

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +2

Query: 299 QCSQLQTLQYPITYAH--QVHLVHRRPVFISGLELCPHSIGSVKTLEVYQNFIR 454
           Q S  Q  + P   AH   +HL H R   ++G ++CP SI   +   +Y N  R
Sbjct: 269 QLSHNQLTKIPPINAHLEHLHLDHNRIKSVNGTQICPVSIAVAEDYGLYGNIPR 322


>sp|O15015|ZN646_HUMAN Zinc finger protein 646 OS=Homo sapiens
            GN=ZNF646 PE=2 SV=1
          Length = 1829

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = +2

Query: 275  GKEHL*KHQCSQLQTLQYPITYAHQVHLVHRRPVFISGLELCPHSIGSVKTLEVYQNFIR 454
            G E L + Q    +  Q   TY H   LV+ R +  +G  LCP        L  Y+N +R
Sbjct: 1040 GGESLLEAQPRPFRCNQCGKTYRHGGSLVNHRKIHQTGDFLCPVCSRCYPNLAAYRNHLR 1099

Query: 455  NN 460
            N+
Sbjct: 1100 NH 1101


>sp|P42811|PRS2_METTM Putative 26S protease regulatory subunit
           homolog MTH1011 OS=Methanobacterium thermoautotrophicum
           (strain Marburg / DSM 2133) PE=3 SV=1
          Length = 372

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 210 LSDSWEALVVSLSNNPNLTFDGVRGSLNEEIRQKASGE 97
           ++ +W  + +  +NNP L  + +R    EEI  K  G+
Sbjct: 255 INQNWGVVTIGATNNPELLDNAIRSRFEEEIEFKLPGD 292


>sp|O43557|TNF14_HUMAN Tumor necrosis factor ligand superfamily
           member 14 OS=Homo sapiens GN=TNFSF14 PE=1 SV=1
          Length = 240

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 150 DGVRGSLNEEIRQKASGEVNASAHMVRGNANAKG 49
           DG  GS  + I+++ S EVN +AH+   N++  G
Sbjct: 74  DGPAGSWEQLIQERRSHEVNPAAHLTGANSSLTG 107
tr_hit_id Q9AU17
Definition tr|Q9AU17|Q9AU17_SOLCI Polyprotein-like OS=Solanum chilense
Align length 56
Score (bit) 38.5
E-value 0.21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920695|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_C11.
         (524 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9AU17|Q9AU17_SOLCI Polyprotein-like OS=Solanum chilense PE=4...    39   0.21 
tr|Q6BCY1|Q6BCY1_IPOBA Gag-Pol OS=Ipomoea batatas GN=Rtsp-1AA PE...    37   0.46 
tr|A5AJ06|A5AJ06_VITVI Putative uncharacterized protein OS=Vitis...    37   0.46 
tr|B8YLY6|B8YLY6_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    37   0.78 
tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    37   0.78 
tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    37   0.78 
tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    37   0.78 
tr|A5B9V6|A5B9V6_VITVI Putative uncharacterized protein OS=Vitis...    36   1.0  
tr|Q5GA70|Q5GA70_SOLLC Putative uncharacterized protein OS=Solan...    36   1.3  
tr|A5BM11|A5BM11_VITVI Putative uncharacterized protein OS=Vitis...    36   1.3  
tr|A7QVU5|A7QVU5_VITVI Chromosome chr7 scaffold_192, whole genom...    35   1.7  
tr|A5C2E5|A5C2E5_VITVI Putative uncharacterized protein OS=Vitis...    35   1.7  
tr|A5BHR8|A5BHR8_VITVI Putative uncharacterized protein OS=Vitis...    35   2.3  
tr|A5AJI7|A5AJI7_VITVI Putative uncharacterized protein OS=Vitis...    35   2.3  
tr|A3SRM4|A3SRM4_9RHOB Copper-translocating P-type ATPase OS=Ros...    35   3.0  
tr|Q5MG99|Q5MG99_IPOBA Hypothetical retrotransposon OS=Ipomoea b...    35   3.0  
tr|A7Q5R7|A7Q5R7_VITVI Chromosome chr14 scaffold_54, whole genom...    35   3.0  
tr|A5C9D7|A5C9D7_VITVI Putative uncharacterized protein OS=Vitis...    35   3.0  
tr|A5AU25|A5AU25_VITVI Putative uncharacterized protein OS=Vitis...    35   3.0  
tr|A5BPZ5|A5BPZ5_VITVI Putative uncharacterized protein OS=Vitis...    34   3.9  
tr|A5AQV5|A5AQV5_VITVI Putative uncharacterized protein OS=Vitis...    34   3.9  
tr|A5AI76|A5AI76_VITVI Putative uncharacterized protein OS=Vitis...    34   3.9  
tr|A5AIP8|A5AIP8_VITVI Putative uncharacterized protein OS=Vitis...    34   5.1  
tr|A5AHK1|A5AHK1_VITVI Putative uncharacterized protein OS=Vitis...    34   5.1  
tr|Q9L542|Q9L542_9BACI Nitrile hydratase beta subunit OS=Bacillu...    33   6.6  
tr|Q84FS6|Q84FS6_9BACI Nitrile hydratase beta subunit OS=Bacillu...    33   6.6  
tr|Q9ZRJ0|Q9ZRJ0_TOBAC Retrotransposon Tto1 DNA OS=Nicotiana tab...    33   6.6  
tr|A5C6J6|A5C6J6_VITVI Putative uncharacterized protein OS=Vitis...    33   6.6  
tr|A5B8H2|A5B8H2_VITVI Putative uncharacterized protein OS=Vitis...    33   6.6  
tr|A8N0Y8|A8N0Y8_COPC7 Putative uncharacterized protein OS=Copri...    33   6.6  

>tr|Q9AU17|Q9AU17_SOLCI Polyprotein-like OS=Solanum chilense PE=4
           SV=1
          Length = 1328

 Score = 38.5 bits (88), Expect = 0.21
 Identities = 15/56 (26%), Positives = 35/56 (62%)
 Frame = -2

Query: 508 EAWLNLNKKAIVYVKMVVADEILVDLKGLDTAYAVWAKLKATYENRTPVNQVYLMR 341
           E W  L++KA   +++ + D+++ ++   ++A  +W KL+  Y ++T  N++YL +
Sbjct: 51  EDWEELDEKAASAIRLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYLKK 106


>tr|Q6BCY1|Q6BCY1_IPOBA Gag-Pol OS=Ipomoea batatas GN=Rtsp-1AA PE=4
           SV=1
          Length = 1298

 Score = 37.4 bits (85), Expect = 0.46
 Identities = 16/57 (28%), Positives = 32/57 (56%)
 Frame = -2

Query: 511 DEAWLNLNKKAIVYVKMVVADEILVDLKGLDTAYAVWAKLKATYENRTPVNQVYLMR 341
           D+ W  +N+ A+  + + +AD +L  ++   TA  +W  L   YE ++  N+++L R
Sbjct: 45  DKKWSEMNEDAMADLYLSIADGVLSSIEEKKTANEIWDHLNRLYEAKSLHNKIFLKR 101


>tr|A5AJ06|A5AJ06_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_040386 PE=4 SV=1
          Length = 885

 Score = 37.4 bits (85), Expect = 0.46
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
 Frame = -3

Query: 213 TLSDSWEALVVSLSNNP---NLTFDGVRGS-LNEEIRQKASGEVNASAHMV---RGNANA 55
           TLSDSWE    SLSN+     +  D V+   LNEE+R+K+ G  + S  ++   RG + +
Sbjct: 116 TLSDSWETFRTSLSNSAPDGTMNMDLVKSCILNEEMRRKSQGSSSQSNVLITEKRGRSKS 175

Query: 54  KGQEQEQR 31
            G +   R
Sbjct: 176 IGPKNRDR 183


>tr|B8YLY6|B8YLY6_MEDTR Gag-Pol polyprotein OS=Medicago truncatula
           PE=4 SV=1
          Length = 1305

 Score = 36.6 bits (83), Expect = 0.78
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = -2

Query: 511 DEAWLNLNKKAIVYVKMVVADEILVDLKGLDTAYAVWAKLKATYENRTPVNQVYLMR 341
           DE W  ++  A+  + + +AD +L  +    TA  +W  L   YE ++  N+++L R
Sbjct: 44  DEKWKEMDDNAVANLHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKR 100


>tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatula
           PE=4 SV=1
          Length = 1305

 Score = 36.6 bits (83), Expect = 0.78
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = -2

Query: 511 DEAWLNLNKKAIVYVKMVVADEILVDLKGLDTAYAVWAKLKATYENRTPVNQVYLMR 341
           DE W  ++  A+  + + +AD +L  +    TA  +W  L   YE ++  N+++L R
Sbjct: 44  DEKWKEMDDNAVANLHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKR 100


>tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatula
           PE=4 SV=1
          Length = 1305

 Score = 36.6 bits (83), Expect = 0.78
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = -2

Query: 511 DEAWLNLNKKAIVYVKMVVADEILVDLKGLDTAYAVWAKLKATYENRTPVNQVYLMR 341
           DE W  ++  A+  + + +AD +L  +    TA  +W  L   YE ++  N+++L R
Sbjct: 44  DEKWKEMDDNAVANLHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKR 100


>tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatula
           PE=4 SV=1
          Length = 1305

 Score = 36.6 bits (83), Expect = 0.78
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = -2

Query: 511 DEAWLNLNKKAIVYVKMVVADEILVDLKGLDTAYAVWAKLKATYENRTPVNQVYLMR 341
           DE W  ++  A+  + + +AD +L  +    TA  +W  L   YE ++  N+++L R
Sbjct: 44  DEKWKEMDDNAVANLHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKR 100


>tr|A5B9V6|A5B9V6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_040104 PE=4 SV=1
          Length = 127

 Score = 36.2 bits (82), Expect = 1.0
 Identities = 13/52 (25%), Positives = 31/52 (59%)
 Frame = -2

Query: 502 WLNLNKKAIVYVKMVVADEILVDLKGLDTAYAVWAKLKATYENRTPVNQVYL 347
           W +L  K    +++ +AD+++  +   ++  A+W KL++ Y ++   N++YL
Sbjct: 53  WKDLEVKVAATIRLCLADDVMYHVMDEESPTAIWLKLESQYMSKLLTNKLYL 104


>tr|Q5GA70|Q5GA70_SOLLC Putative uncharacterized protein OS=Solanum
           lycopersicum PE=4 SV=1
          Length = 151

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
 Frame = -3

Query: 225 FFA*TLSDSWEALVVSLSNNP---NLTFDGVRGSL-NEEIRQKASGEVNASAHMV---RG 67
           F   +L DSWE LVVS+SN+     ++ D ++ S+ NEE+R+K    V+ S  +V   RG
Sbjct: 7   FLLSSLPDSWETLVVSISNSAPDGTISLDVIKESMFNEELRRKEM-RVDISQALVVENRG 65

Query: 66  NANAKG 49
            + ++G
Sbjct: 66  RSKSRG 71


>tr|A5BM11|A5BM11_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_012088 PE=4 SV=1
          Length = 330

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
 Frame = -3

Query: 213 TLSDSWEALVVSLSNNPNLTFDGVRGS-------LNEEIRQKASGEVNASAHMV---RGN 64
           TL DSWE    SLS   NL  DG+          LNEE+R+K+ G  + S  +V   RG 
Sbjct: 114 TLPDSWETFRTSLS---NLAPDGIMNMDLVKSCVLNEEMRRKSQGSSSQSNVLVTEKRGR 170

Query: 63  ANAKGQEQEQR 31
           + + G +   R
Sbjct: 171 SKSTGPKNRDR 181