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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920710
Clone id YMU001_000140_E07
Library
Length 474
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000140_E07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTCTCCATTAGGAGAGAGTAAAGGCTCAGATGACATTAAGATCTGCGGGGTCTATAAGGA
GAAATATGCAGGCTAGCTGCCTGCGCAGGGATCAATTGTGTTAAAATTGGATGCCTAAAT
GTAGCCGTGTGTATTTGAGAAAAATAAAATACCACACTGCAAAGTTGTTGAAACCCTCTC
CTTTCCCACCAAAATACTTGCCCTCAGTCAAGTGCATACAACTGTCAAACGAAGCATTTG
AAAGTCGTGAGAAACCAATAACTTGAGGTACTTTGACTATCGCTCTTTACTTGAACACAT
GCATACATAATCTGTTTCCAAAACCTTCCCAGCTCAGGTACCAATCTGTATGAAACAACA
GCTATGGAAACTCGATCCTTGCCATTACATGATAGCTCTCGGCATTGCCCTCCAAGTCTG
ACCTAGCCTTATGAATGATCCTGCCTGCTCTATTGCTAGAGAAATGGGAAGTTC
■■Homology search results ■■ -
sp_hit_id P81919
Definition sp|P81919|OR46A_DROME Odorant receptor 46a, isoform A OS=Drosophila melanogaster
Align length 77
Score (bit) 32.3
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920710|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_E07.
         (474 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P81919|OR46A_DROME Odorant receptor 46a, isoform A OS=Drosoph...    32   1.1  
sp|Q3T0T0|GDE1_BOVIN Glycerophosphodiester phosphodiesterase 1 O...    32   1.9  
sp|P95096|DNLI_MYCTU Probable DNA ligase OS=Mycobacterium tuberc...    30   7.2  
sp|A5U776|DNLI_MYCTA Probable DNA ligase OS=Mycobacterium tuberc...    30   7.2  
sp|A1KN60|DNLI_MYCBP Probable DNA ligase OS=Mycobacterium bovis ...    30   7.2  
sp|Q7TTR7|DNLI_MYCBO Probable DNA ligase OS=Mycobacterium bovis ...    30   7.2  

>sp|P81919|OR46A_DROME Odorant receptor 46a, isoform A OS=Drosophila
           melanogaster GN=Or46a PE=2 SV=4
          Length = 381

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 17/77 (22%), Positives = 31/77 (40%)
 Frame = -2

Query: 371 VSIAVVSYRLVPELGRFWKQIMYACVQVKSDSQSTSSYWFLTTFKCFV*QLYALD*GQVF 192
           +S A +S  L+P+    W  +         ++  + +YW L  ++C    +  +      
Sbjct: 133 LSFAALSMILIPQFALDWSHLPLKTYNPLGENTGSPAYWLLYCYQCLALSVSCI------ 186

Query: 191 WWERRGFQQLCSVVFYF 141
                GF  LCS +F F
Sbjct: 187 --TNIGFDSLCSSLFIF 201


>sp|Q3T0T0|GDE1_BOVIN Glycerophosphodiester phosphodiesterase 1
           OS=Bos taurus GN=GDE1 PE=2 SV=1
          Length = 331

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 17/68 (25%), Positives = 27/68 (39%)
 Frame = -2

Query: 338 PELGRFWKQIMYACVQVKSDSQSTSSYWFLTTFKCFV*QLYALD*GQVFWWERRGFQQLC 159
           P    FWKQ M+  + +  D    +  W+L     F+ Q   +    V  W  +G Q + 
Sbjct: 239 PRFESFWKQSMFVALDILLDWSMHNILWYLCGVSAFLAQKDFISPDYVKKWSAKGIQVVA 298

Query: 158 SVVFYFSQ 135
             V  F +
Sbjct: 299 WTVNTFDE 306


>sp|P95096|DNLI_MYCTU Probable DNA ligase OS=Mycobacterium
           tuberculosis GN=lig PE=3 SV=2
          Length = 507

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -1

Query: 441 GSFIRLGQTWRAMPRAIM*WQGSSFHSCCFIQIGT*AGKVLE 316
           G F+ +G+T++ M  A++ WQ + FH    I +G   G V++
Sbjct: 416 GGFVMVGKTFKGMTDAMLDWQTTRFHE---IAVGPTDGYVVQ 454


>sp|A5U776|DNLI_MYCTA Probable DNA ligase OS=Mycobacterium
           tuberculosis (strain ATCC 25177 / H37Ra) GN=lig PE=3
           SV=1
          Length = 507

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -1

Query: 441 GSFIRLGQTWRAMPRAIM*WQGSSFHSCCFIQIGT*AGKVLE 316
           G F+ +G+T++ M  A++ WQ + FH    I +G   G V++
Sbjct: 416 GGFVMVGKTFKGMTDAMLDWQTTRFHE---IAVGPTDGYVVQ 454


>sp|A1KN60|DNLI_MYCBP Probable DNA ligase OS=Mycobacterium bovis
           (strain BCG / Pasteur 1173P2) GN=lig PE=3 SV=1
          Length = 507

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -1

Query: 441 GSFIRLGQTWRAMPRAIM*WQGSSFHSCCFIQIGT*AGKVLE 316
           G F+ +G+T++ M  A++ WQ + FH    I +G   G V++
Sbjct: 416 GGFVMVGKTFKGMTDAMLDWQTTRFHE---IAVGPTDGYVVQ 454


>sp|Q7TTR7|DNLI_MYCBO Probable DNA ligase OS=Mycobacterium bovis
           GN=lig PE=3 SV=1
          Length = 507

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -1

Query: 441 GSFIRLGQTWRAMPRAIM*WQGSSFHSCCFIQIGT*AGKVLE 316
           G F+ +G+T++ M  A++ WQ + FH    I +G   G V++
Sbjct: 416 GGFVMVGKTFKGMTDAMLDWQTTRFHE---IAVGPTDGYVVQ 454
tr_hit_id A0NHD2
Definition tr|A0NHD2|A0NHD2_ANOGA AGAP002106-PA OS=Anopheles gambiae
Align length 95
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920710|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_E07.
         (474 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0NHD2|A0NHD2_ANOGA AGAP002106-PA OS=Anopheles gambiae GN=AGA...    35   1.9  
tr|B2PY76|B2PY76_PROST Putative uncharacterized protein OS=Provi...    33   7.1  
tr|B4LB34|B4LB34_DROVI GJ12610 OS=Drosophila virilis GN=GJ12610 ...    33   9.3  

>tr|A0NHD2|A0NHD2_ANOGA AGAP002106-PA OS=Anopheles gambiae
            GN=AGAP002106 PE=4 SV=2
          Length = 1070

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 18/95 (18%)
 Frame = +3

Query: 108  WMPKCSRVYLRK---------IKYHTAKLLKPSPFP---------PKYLPSVKCIQLSNE 233
            W+ K  R Y  K         +K+   +LL   PFP         PKY  +++   L NE
Sbjct: 806  WLEKALRPYRGKRTKRDLIEDVKFD--RLLNKRPFPEQIGEYKNHPKY--AIERYLLRNE 861

Query: 234  AFESREKPIT*GTLTIALYLNTCIHNLFPKPSQLR 338
            A   R+ PI        +YL  C+H L  + S LR
Sbjct: 862  AIYPRDAPILGHIRDEPIYLRDCVHTLHSRESWLR 896


>tr|B2PY76|B2PY76_PROST Putative uncharacterized protein
           OS=Providencia stuartii ATCC 25827 GN=PROSTU_02851 PE=4
           SV=1
          Length = 670

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/51 (39%), Positives = 29/51 (56%)
 Frame = -2

Query: 416 LGGQCRELSCNGKDRVSIAVVSYRLVPELGRFWKQIMYACVQVKSDSQSTS 264
           L  Q ++    GKD +S   VS+ L PEL RFW+Q  Y  V+V    +++S
Sbjct: 478 LDAQKQQAVYQGKDFLS---VSFGLTPELLRFWQQAGYQLVRVGEHLEASS 525


>tr|B4LB34|B4LB34_DROVI GJ12610 OS=Drosophila virilis GN=GJ12610
           PE=4 SV=1
          Length = 197

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +3

Query: 114 PKCSRVYLRKIKYHTAKLLKPSPFPPKYLPSVKCIQLSNE 233
           P  SR YL  ++ H A L      P  YLP V+ +QLSNE
Sbjct: 27  PLPSRDYLPPVEQHAASLPHVVTPPRDYLPPVESLQLSNE 66