BP920713
Clone id YMU001_000140_E10
Library
Length 448
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000140_E10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CCAAAGTTGAGAAGGGGATTAAGCACCAATTGGGCACCCTAATTTTTAAGTTTAAAATGA
ATTTGATCAACATGGTATTCAACCCTCGAATGCATGGAAGCCTCAGAAGGGCCAAGGGTG
TTTGTTGAGGCAGACCTGTCCAGGTGGGCATCTACAAAAGTCTAGATTCTAGCCAAGCAG
GTATTGCTTGTGGATGCATAACGCCCAAGGCTCAATTCCCAATGGCATGAAACTTCGCCT
CAGGAAATAAAAAGGTTTGCACTGTAAATATTTATCTCCCATTATTTGTCCATAAACATA
GCTAGTAGTTCATTCAATCCTGCAATAATTCAAGCTTCACACCATTATCCTCTTCAAGAC
ATTCTGCTCCAGAGTCCCTGCTAGTGACTGCTGCCCCATGGCCATTTGGTAAGTCAGCCA
ACTTCCCATGCCTGCTACTTCCCGATCT
■■Homology search results ■■ -
sp_hit_id Q14DL0
Definition sp|Q14DL0|UBQLN_MOUSE Ubiquilin-like protein OS=Mus musculus
Align length 76
Score (bit) 30.0
E-value 4.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920713|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_E10.
(448 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q14DL0|UBQLN_MOUSE Ubiquilin-like protein OS=Mus musculus GN=... 30 4.7
sp|P23253|TCNA_TRYCR Sialidase OS=Trypanosoma cruzi GN=TCNA PE=2... 30 6.0
sp|O15303|GRM6_HUMAN Metabotropic glutamate receptor 6 OS=Homo s... 29 8.0

>sp|Q14DL0|UBQLN_MOUSE Ubiquilin-like protein OS=Mus musculus
GN=Ubqlnl PE=1 SV=1
Length = 610

Score = 30.0 bits (66), Expect = 4.7
Identities = 22/76 (28%), Positives = 41/76 (53%)
Frame = +1

Query: 172 AKQVLLVDA*RPRLNSQWHETSPQEIKRFAL*IFISHYLSINIASSSFNPAIIQASHHYP 351
A+ +LL++ P+LN QW + +P ++ L H L + +A+ + A++Q H
Sbjct: 436 AQMLLLMNT--PQLNEQWRQETPTPLQSSQL-----HDLLLALANPKTSQALLQIEH--G 486

Query: 352 LQDILLQSPC**LLPH 399
LQ + ++P LLP+
Sbjct: 487 LQLLATEAPA--LLPY 500


>sp|P23253|TCNA_TRYCR Sialidase OS=Trypanosoma cruzi GN=TCNA PE=2 SV=1
Length = 1162

Score = 29.6 bits (65), Expect = 6.0
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3

Query: 318 SCNNSSFTPLSSSRHSAPESLLVTAAPWPFGKSANFPCLLLPD 446
S + + TP SS HS P + P G SAN L+LPD
Sbjct: 1099 SAHGTPSTPADSSAHSTPST--------PAGSSANGTVLILPD 1133


>sp|O15303|GRM6_HUMAN Metabotropic glutamate receptor 6 OS=Homo
sapiens GN=GRM6 PE=1 SV=1
Length = 877

Score = 29.3 bits (64), Expect = 8.0
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -1

Query: 190 QAIPAWLESRLL*MPT--WTGLPQQTPLALLRLPCIRGLNTMLIK 62
QA+ W E+ L + W+G P + P +L LPC G ++K
Sbjct: 488 QAVGQWAETLRLDVEALQWSGDPHEVPSSLCSLPCGPGERKKMVK 532


tr_hit_id Q7TFW4
Definition tr|Q7TFW4|Q7TFW4_RHCM6 Rh17 OS=Rhesus cytomegalovirus (strain 68-1)
Align length 85
Score (bit) 34.3
E-value 3.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920713|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_E10.
(448 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q7TFW4|Q7TFW4_RHCM6 Rh17 OS=Rhesus cytomegalovirus (strain 68... 34 3.1

>tr|Q7TFW4|Q7TFW4_RHCM6 Rh17 OS=Rhesus cytomegalovirus (strain 68-1)
PE=4 SV=1
Length = 366

Score = 34.3 bits (77), Expect = 3.1
Identities = 24/85 (28%), Positives = 39/85 (45%)
Frame = +3

Query: 153 YKSLDSSQAGIACGCITPKAQFPMA*NFASGNKKVCTVNIYLPLFVHKHS**FIQSCNNS 332
Y S +SQ TP ++ + ++ S N CT ++ L + + S N+
Sbjct: 62 YGSASTSQGNTT----TPMSRTVTSISYTSQNAS-CTSDVTLTSYTNTLSNESTNVSRNN 116

Query: 333 SFTPLSSSRHSAPESLLVTAAPWPF 407
S+T ++S S PE + T PWPF
Sbjct: 117 SYTTTTTSWTSTPEMNITTPPPWPF 141