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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920715
Clone id YMU001_000140_F01
Library
Length 169
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000140_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGTGGTCGAAACACAACATAGTCTTGAAAGGCTATTAGAGCTCATCGAGACACATCAACA
AGAGGTTGAGAAAGCTCTTGACAGCATGGATGAGGAAGCTACTCAGTATCATAAAGAGGA
ACGTGCGAATATAGTCGAAGATGAGCCTTCAGCTGTAAGGGACATGATG
■■Homology search results ■■ -
sp_hit_id Q4R630
Definition sp|Q4R630|NDC80_MACFA Kinetochore protein NDC80 homolog OS=Macaca fascicularis
Align length 49
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920715|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_F01.
         (169 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4R630|NDC80_MACFA Kinetochore protein NDC80 homolog OS=Macac...    32   1.3  
sp|Q9D0F1|NDC80_MOUSE Kinetochore protein NDC80 homolog OS=Mus m...    30   2.9  
sp|O14777|NDC80_HUMAN Kinetochore protein NDC80 homolog OS=Homo ...    30   3.7  
sp|Q02224|CENPE_HUMAN Centromere-associated protein E OS=Homo sa...    30   3.7  
sp|Q54K35|TIM17_DICDI Mitochondrial import inner membrane transl...    30   4.9  
sp|Q15431|SYCP1_HUMAN Synaptonemal complex protein 1 OS=Homo sap...    29   8.3  
sp|Q5U3A7|OPA1_DANRE Dynamin-like 120 kDa protein, mitochondrial...    29   8.3  
sp|Q76I89|NDC80_CHICK Kinetochore protein NDC80 homolog OS=Gallu...    29   8.3  
sp|Q9GYZ9|HEMTM_THETS Myohemerythrin OS=Theromyzon tessulatum PE...    29   8.3  

>sp|Q4R630|NDC80_MACFA Kinetochore protein NDC80 homolog OS=Macaca
           fascicularis GN=NDC80 PE=2 SV=1
          Length = 642

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +2

Query: 17  HSLERLLELIETHQQEVEKALDSMDEEATQYHKEERANIVEDEPSAVRD 163
           ++L+RLLE++ TH   VEK L+    +A + ++E  +  + +    +RD
Sbjct: 580 NNLQRLLEMVATHVGSVEKHLEEQIAKADREYEECMSEDLSENIKEIRD 628


>sp|Q9D0F1|NDC80_MOUSE Kinetochore protein NDC80 homolog OS=Mus
           musculus GN=Ndc80 PE=2 SV=1
          Length = 642

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/53 (32%), Positives = 31/53 (58%)
 Frame = +2

Query: 8   ETQHSLERLLELIETHQQEVEKALDSMDEEATQYHKEERANIVEDEPSAVRDM 166
           + +++L+RLLE++ TH   +EK L   +EE  +  +E    + ED    +R+M
Sbjct: 577 KVENNLQRLLEMVATHVGSLEKHL---EEENAKADREYEEFMSEDLLENIREM 626


>sp|O14777|NDC80_HUMAN Kinetochore protein NDC80 homolog OS=Homo
           sapiens GN=NDC80 PE=1 SV=1
          Length = 642

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +2

Query: 17  HSLERLLELIETHQQEVEKALDSMDEEATQYHKEERANIVEDEPSAVRD 163
           ++L+RLLE++ TH   VEK L+    +  + ++E  +  + +    +RD
Sbjct: 580 NNLQRLLEMVATHVGSVEKHLEEQIAKVDREYEECMSEDLSENIKEIRD 628


>sp|Q02224|CENPE_HUMAN Centromere-associated protein E OS=Homo sapiens
            GN=CENPE PE=1 SV=2
          Length = 2701

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 5    VETQHSLERLLELIETHQQEVEKALDSMDEEATQ-YHKEERANIVEDE 145
            ++TQ  L   LE ++ HQ+ +      + EE ++  H EE     +DE
Sbjct: 960  IDTQEQLRNALESLKQHQETINTLKSKISEEVSRNLHMEENTGETKDE 1007


>sp|Q54K35|TIM17_DICDI Mitochondrial import inner membrane
           translocase subunit tim17 OS=Dictyostelium discoideum
           GN=timm17 PE=3 SV=1
          Length = 183

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 41  LIETHQQEVEKALDSMDEEATQYHKEERANIVED 142
           +IE  Q  ++K + +  EE TQ H EER    E+
Sbjct: 119 IIEAFQHMMQKRMQAQQEEMTQQHLEERKRYEEE 152


>sp|Q15431|SYCP1_HUMAN Synaptonemal complex protein 1 OS=Homo
           sapiens GN=SYCP1 PE=1 SV=2
          Length = 976

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 14  QHSLERLLELIETHQQEVEKALDSMDEEATQYHKEER 124
           QH +  ++ L+E H+ + +K ++  D E   Y  +E+
Sbjct: 704 QHKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQ 740


>sp|Q5U3A7|OPA1_DANRE Dynamin-like 120 kDa protein, mitochondrial
           OS=Danio rerio GN=opa1 PE=2 SV=1
          Length = 966

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 8   ETQHSLERLLELIETHQQEVEKALDSMDEEATQYHKEERANIVEDEPSAVRD 163
           ET++ LERLL+L E H   +       ++E T   K   A  VE +P  ++D
Sbjct: 796 ETKNELERLLKLHEDHTAYL------ANDEVTTVRKNLEARGVEVDPVLIKD 841


>sp|Q76I89|NDC80_CHICK Kinetochore protein NDC80 homolog OS=Gallus
           gallus GN=NDC80 PE=1 SV=1
          Length = 640

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 20  SLERLLELIETHQQEVEKALDSMDEEATQYHKE 118
           +L RLLE+I TH   +EK LD  + +  + ++E
Sbjct: 584 NLNRLLEVITTHVVSIEKYLDEQNSKIDRDYEE 616


>sp|Q9GYZ9|HEMTM_THETS Myohemerythrin OS=Theromyzon tessulatum PE=2
           SV=1
          Length = 120

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 20  SLERLLELIETHQQEVEKALDSMDEEATQYHKEERANIVE 139
           +LE+L++LIE H  + E+ + S   E    HK+  ++ VE
Sbjct: 45  TLEKLVKLIEDHFTDEEEMMKSKSYEDLDSHKKIHSDFVE 84
tr_hit_id A9SQI5
Definition tr|A9SQI5|A9SQI5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 56
Score (bit) 80.9
E-value 3.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920715|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_F01.
         (169 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SQI5|A9SQI5_PHYPA Predicted protein OS=Physcomitrella paten...    81   3e-14
tr|Q8L7F7|Q8L7F7_ARATH Putative uncharacterized protein At2g4500...    73   8e-12
tr|A7PKF6|A7PKF6_VITVI Chromosome chr15 scaffold_19, whole genom...    69   2e-10
tr|B8ACG5|B8ACG5_ORYSI Putative uncharacterized protein OS=Oryza...    68   2e-10
tr|A2ZZP9|A2ZZP9_ORYSJ Putative uncharacterized protein OS=Oryza...    67   6e-10
tr|A5BNF0|A5BNF0_VITVI Putative uncharacterized protein OS=Vitis...    50   6e-05
tr|Q01F72|Q01F72_OSTTA Nup62 nuclear pore complex glycoprotein p...    35   2.4  
tr|Q2B8F7|Q2B8F7_9BACI Putative uncharacterized protein OS=Bacil...    34   3.2  

>tr|A9SQI5|A9SQI5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_166175 PE=4 SV=1
          Length = 743

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 38/56 (67%), Positives = 50/56 (89%)
 Frame = +2

Query: 2   VVETQHSLERLLELIETHQQEVEKALDSMDEEATQYHKEERANIVEDEPSAVRDMM 169
           VVE+QHSLER LELIETHQQEVEK+L+SM+EEA + +++ER +++EDE +A RDMM
Sbjct: 596 VVESQHSLERQLELIETHQQEVEKSLESMEEEAEKLYRDERPSLLEDEAAATRDMM 651


>tr|Q8L7F7|Q8L7F7_ARATH Putative uncharacterized protein At2g45005
           OS=Arabidopsis thaliana GN=At2g45005 PE=2 SV=1
          Length = 739

 Score = 72.8 bits (177), Expect = 8e-12
 Identities = 35/56 (62%), Positives = 46/56 (82%)
 Frame = +2

Query: 2   VVETQHSLERLLELIETHQQEVEKALDSMDEEATQYHKEERANIVEDEPSAVRDMM 169
           VVETQ SLER LELIETHQQEV+KAL SM+EEA + + +ER ++++DE ++ RD M
Sbjct: 592 VVETQSSLERQLELIETHQQEVDKALQSMEEEAERIYNDERKSLLDDEAASTRDAM 647


>tr|A7PKF6|A7PKF6_VITVI Chromosome chr15 scaffold_19, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019147001
           PE=4 SV=1
          Length = 394

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 34/56 (60%), Positives = 45/56 (80%)
 Frame = +2

Query: 2   VVETQHSLERLLELIETHQQEVEKALDSMDEEATQYHKEERANIVEDEPSAVRDMM 169
           VVETQ  LER LELIETHQQEV+KAL S++EEA + +K+ER  +++DE ++ RD M
Sbjct: 247 VVETQAQLERQLELIETHQQEVDKALLSIEEEAERIYKDERGLLLDDEAASTRDAM 302


>tr|B8ACG5|B8ACG5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_04485 PE=4 SV=1
          Length = 250

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 35/56 (62%), Positives = 44/56 (78%)
 Frame = +2

Query: 2   VVETQHSLERLLELIETHQQEVEKALDSMDEEATQYHKEERANIVEDEPSAVRDMM 169
           VVETQ SLER LELIETHQ+EV+KAL SM+EEA +  ++ER  + EDE ++ RD M
Sbjct: 103 VVETQTSLERQLELIETHQKEVDKALQSMEEEAERVFQDERLLLREDEAASARDTM 158


>tr|A2ZZP9|A2ZZP9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_004021 PE=4 SV=1
          Length = 248

 Score = 66.6 bits (161), Expect = 6e-10
 Identities = 34/54 (62%), Positives = 43/54 (79%)
 Frame = +2

Query: 2   VVETQHSLERLLELIETHQQEVEKALDSMDEEATQYHKEERANIVEDEPSAVRD 163
           VVETQ SLER LELIETHQ+EV+KAL SM+EEA +  ++ER  + EDE ++ RD
Sbjct: 83  VVETQTSLERQLELIETHQKEVDKALQSMEEEAERVFQDERLLLREDEAASARD 136


>tr|A5BNF0|A5BNF0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_016403 PE=4 SV=1
          Length = 279

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 37/93 (39%)
 Frame = +2

Query: 2   VVETQHSLERLLELIETHQQE-------------------------------------VE 70
           VVETQ  LER LELIETHQQE                                     V+
Sbjct: 95  VVETQAQLERQLELIETHQQEDMLLVGHACCEVKFMEYSSCDKRNKKCDVVLQASIRKVD 154

Query: 71  KALDSMDEEATQYHKEERANIVEDEPSAVRDMM 169
           KAL S++EEA + +K+ER  +++DE ++ RD M
Sbjct: 155 KALLSIEEEAERIYKDERGLLLDDEAASTRDAM 187


>tr|Q01F72|Q01F72_OSTTA Nup62 nuclear pore complex glycoprotein
           p62-related protein (IC) OS=Ostreococcus tauri GN=Nup62
           PE=4 SV=2
          Length = 178

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = +2

Query: 11  TQHSLERLLELIETHQQEVEKALDSMDEEA 100
           TQH ++  LEL+E HQ E+E AL S++ +A
Sbjct: 58  TQHRMKFQLELLENHQYEIEAALTSLEGDA 87


>tr|Q2B8F7|Q2B8F7_9BACI Putative uncharacterized protein OS=Bacillus
           sp. NRRL B-14911 GN=B14911_11012 PE=4 SV=1
          Length = 836

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = +2

Query: 5   VETQHSLERLLELIETHQQEVEKALDSMDEEATQYHKEERANIV-EDEPS 151
           +E    +E + +L+ET Q+ +++     D++ T+YH E  A +V EDEP+
Sbjct: 502 IEVSKEIENVKDLVETIQRSIDR-----DKDWTEYHAETLAELVDEDEPN 546