BP920718 |
Clone id |
YMU001_000140_F05 |
Library |
YMU01 |
Length |
520 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000140_F05. |
Accession |
BP920718 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL246Contig1 |
Sequence |
TTCAGATTTCCCCATCTTTGCATGAGCACTGTCACCTCCATTCTTATGTGACACCTCTTT CTTTGAGGATGCAGCCATCCCCTCTGCTTCGTCGAGGCATTTTAGATCCTTGCTCTGATC ATGCACATGACTGTCTCCATTTGAATCAAAAGTTTGTGTGTTGGAAATAACCACTTGATT TCCTGGAGCCACAAGACTCCCTTGTCTTTGATCATTATTGTGTACTTGAGGTCTTTGCTT GAGATTGAAATCTTCTCCATCAGCATTTGACACAGCATAATCTTGCATGTCCTCAAGCGC ATTGGCAGGCTGCAACTCCTCTGTAGGGGCATCCATCCAGATCTCAGCTAACATTGTTGA GTATCTCTCTGTTTGACCAACAAGAAAATCAAGATGCTTGTCCAGCGCTTTTTTCTTGAT GCCTTCAAGCACCATTTGGTGCTTATACATAATCAGCTTTTCAATTTTCGTCCAGAATTT CTTCACGTCCTTAGAAATATTGCTTGCAAGCCTACGCATG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6ZRS2 |
Definition |
sp|Q6ZRS2|SRCAP_HUMAN Helicase SRCAP OS=Homo sapiens |
Align length |
59 |
Score (bit) |
76.3 |
E-value |
8.0e-14 |
Report |
 |
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S832 |
Definition |
tr|A9S832|A9S832_PHYPA SWR1 complex protein, SNF2 family DNA-dependent ATPase (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
66 |
Score (bit) |
98.2 |
E-value |
2.0e-19 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920718|Adiantum capillus-veneris mRNA, clone: YMU001_000140_F05. (520 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S832|A9S832_PHYPA SWR1 complex protein, SNF2 family DNA-dep... 98 2e-19 tr|Q6ZGY4|Q6ZGY4_ORYSJ Putative photoperiod independent early fl... 98 3e-19 tr|A9U2Y8|A9U2Y8_PHYPA SWR1 complex protein, SNF2 family DNA-dep... 94 4e-18 tr|Q9LTV5|Q9LTV5_ARATH Helicase-like protein OS=Arabidopsis thal... 91 3e-17 tr|Q7X9V2|Q7X9V2_ARATH Photoperiod independent early flowering1 ... 91 3e-17 tr|Q3U4M6|Q3U4M6_MOUSE Putative uncharacterized protein OS=Mus m... 78 2e-13 tr|Q6P4A2|Q6P4A2_HUMAN SRCAP protein (Fragment) OS=Homo sapiens ... 76 9e-13 tr|B0JZA6|B0JZA6_HUMAN SRCAP protein OS=Homo sapiens GN=SRCAP PE... 76 9e-13 tr|Q4SFE5|Q4SFE5_TETNG Chromosome 2 SCAF14604, whole genome shot... 74 4e-12 tr|Q28EN0|Q28EN0_XENTR Novel protein (Fragment) OS=Xenopus tropi... 73 7e-12 tr|B3MBX4|B3MBX4_DROAN GF12812 OS=Drosophila ananassae GN=GF1281... 73 7e-12 tr|B6MUW8|B6MUW8_BRAFL Putative uncharacterized protein OS=Branc... 72 1e-11 tr|B5E1L0|B5E1L0_DROPS GA24314 OS=Drosophila pseudoobscura pseud... 72 1e-11 tr|B4GI08|B4GI08_DROPE GL16840 OS=Drosophila persimilis GN=GL168... 72 1e-11 tr|B4P902|B4P902_DROYA Domino OS=Drosophila yakuba GN=Dyak\dom P... 72 2e-11 tr|B4MJU2|B4MJU2_DROWI GK20897 OS=Drosophila willistoni GN=GK208... 72 2e-11 tr|B4LLH7|B4LLH7_DROVI GJ20044 OS=Drosophila virilis GN=GJ20044 ... 72 2e-11 tr|B4KRF8|B4KRF8_DROMO GI19071 OS=Drosophila mojavensis GN=GI190... 72 2e-11 tr|B4J6Z7|B4J6Z7_DROGR GH20710 OS=Drosophila grimshawi GN=GH2071... 72 2e-11 tr|B3NJL6|B3NJL6_DROER GG22110 OS=Drosophila erecta GN=GG22110 P... 72 2e-11 tr|B6NEC3|B6NEC3_BRAFL Putative uncharacterized protein OS=Branc... 71 3e-11 tr|Q8MLW2|Q8MLW2_DROME Domino, isoform D OS=Drosophila melanogas... 70 5e-11 tr|B5RJR0|B5RJR0_DROME LP03212p (Fragment) OS=Drosophila melanog... 70 5e-11 tr|B5RJJ7|B5RJJ7_DROME LD35056p (Fragment) OS=Drosophila melanog... 70 5e-11 tr|B4QG22|B4QG22_DROSI GD11588 OS=Drosophila simulans GN=GD11588... 70 5e-11 tr|B4I7P3|B4I7P3_DROSE GM15831 OS=Drosophila sechellia GN=GM1583... 70 5e-11 tr|B7QDK0|B7QDK0_IXOSC E1A-binding protein p400, putative (Fragm... 69 1e-10 tr|B3S577|B3S577_TRIAD Putative uncharacterized protein OS=Trich... 67 4e-10 tr|A5AP91|A5AP91_VITVI Putative uncharacterized protein OS=Vitis... 67 5e-10 tr|Q17L58|Q17L58_AEDAE E1a binding protein P400 OS=Aedes aegypti... 67 5e-10
>tr|A9S832|A9S832_PHYPA SWR1 complex protein, SNF2 family DNA-dependent ATPase (Fragment) OS=Physcomitrella patens subsp. patens GN=CHR1515 PE=4 SV=1 Length = 1780
Score = 98.2 bits (243), Expect = 2e-19 Identities = 47/66 (71%), Positives = 56/66 (84%) Frame = -2
Query: 519 MRRLASNISKDVKKFWTKIEKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEI 340 MRR+ASNI+KDVKKFW K++KL+ YK Q+++E KKKALDKHLDFL+GQTERYSTMLAE Sbjct: 76 MRRVASNIAKDVKKFWLKVDKLVSYKQQLLVEERKKKALDKHLDFLLGQTERYSTMLAEN 135
Query: 339 WMDAPT 322 D T Sbjct: 136 LADNTT 141
>tr|Q6ZGY4|Q6ZGY4_ORYSJ Putative photoperiod independent early flowering1 OS=Oryza sativa subsp. japonica GN=OJ1743_B12.28 PE=4 SV=1 Length = 2021
Score = 97.8 bits (242), Expect = 3e-19 Identities = 58/154 (37%), Positives = 80/154 (51%) Frame = -2
Query: 519 MRRLASNISKDVKKFWTKIEKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEI 340 +R++A NISKDVKKFWTKIEKL+ YK+Q+ LE KKKALDK LDFL+GQTERYSTMLA Sbjct: 90 LRKVALNISKDVKKFWTKIEKLVFYKNQLELEERKKKALDKQLDFLLGQTERYSTMLA-- 147
Query: 339 WMDAPTEELQPANALEDMQDYAVSNADGEDFNLKQRPQVHNNDQRQGSLVAPGNQVVISN 160 E++ D + N + + QR Q + + + + N Sbjct: 148 ---------------ENLVDVRLQNQENDSLQTNQRSQQELAQEN----INASSPTDVDN 188
Query: 159 TQTFDSNGDSHVHDQSKDLKCLDEAEGMAASSKK 58 + D S + D +DE E +++ Sbjct: 189 VEIDDDYNSSLGEEPKDDEHTIDEDEAQITEAER 222
>tr|A9U2Y8|A9U2Y8_PHYPA SWR1 complex protein, SNF2 family DNA-dependent ATPase (Fragment) OS=Physcomitrella patens subsp. patens GN=CHR1545 PE=4 SV=1 Length = 1727
Score = 94.0 bits (232), Expect = 4e-18 Identities = 50/77 (64%), Positives = 61/77 (79%), Gaps = 2/77 (2%) Frame = -2
Query: 519 MRRLASNISKDVKKFWTKIEKLIMYKHQMVLEGIKKKALDKHLDFLVGQTE-RYSTMLAE 343 MR++ASNI+KDV+KFW K+EKL+ YK Q+++E KKKALDKHLDFL+GQTE RYSTMLAE Sbjct: 63 MRKVASNIAKDVRKFWLKVEKLVSYKQQLLVEERKKKALDKHLDFLLGQTESRYSTMLAE 122
Query: 342 IWMDAPTE-ELQPANAL 295 D T ELQ + L Sbjct: 123 NLADTTTTYELQISQPL 139
>tr|Q9LTV5|Q9LTV5_ARATH Helicase-like protein OS=Arabidopsis thaliana PE=4 SV=1 Length = 2061
Score = 90.9 bits (224), Expect = 3e-17 Identities = 41/59 (69%), Positives = 52/59 (88%) Frame = -2
Query: 519 MRRLASNISKDVKKFWTKIEKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAE 343 +R++A NISKD+KKFW K+EKL++YKHQ+V KKKA+DK L+FL+GQTERYSTMLAE Sbjct: 102 LRKVALNISKDMKKFWMKVEKLVLYKHQLVRNEKKKKAMDKQLEFLLGQTERYSTMLAE 160
>tr|Q7X9V2|Q7X9V2_ARATH Photoperiod independent early flowering1 OS=Arabidopsis thaliana GN=PIE1 PE=1 SV=1 Length = 2055
Score = 90.9 bits (224), Expect = 3e-17 Identities = 41/59 (69%), Positives = 52/59 (88%) Frame = -2
Query: 519 MRRLASNISKDVKKFWTKIEKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAE 343 +R++A NISKD+KKFW K+EKL++YKHQ+V KKKA+DK L+FL+GQTERYSTMLAE Sbjct: 102 LRKVALNISKDMKKFWMKVEKLVLYKHQLVRNEKKKKAMDKQLEFLLGQTERYSTMLAE 160
>tr|Q3U4M6|Q3U4M6_MOUSE Putative uncharacterized protein OS=Mus musculus GN=Srcap PE=2 SV=1 Length = 936
Score = 78.2 bits (191), Expect = 2e-13 Identities = 40/110 (36%), Positives = 65/110 (59%), Gaps = 6/110 (5%) Frame = -2
Query: 519 MRRLASNISKDVKKFWTKIEKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEI 340 +RR+AS ++KDV++FW+ +EK++ +K Q LE +KKALD HLDF+VGQTE+YS +L++ Sbjct: 172 LRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQS 231
Query: 339 WMDAPTEELQPANALEDMQDYA------VSNADGEDFNLKQRPQVHNNDQ 208 P ++ A VS D ED + + + + +D+ Sbjct: 232 LNQPPASSKAGSSPCLGSSSAASSPPPPVSRLDDEDGDFQPQEEEEEDDE 281
>tr|Q6P4A2|Q6P4A2_HUMAN SRCAP protein (Fragment) OS=Homo sapiens GN=SRCAP PE=2 SV=1 Length = 584
Score = 76.3 bits (186), Expect = 9e-13 Identities = 32/59 (54%), Positives = 49/59 (83%) Frame = -2
Query: 519 MRRLASNISKDVKKFWTKIEKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAE 343 +RR+AS ++KDV++FW+ +EK++ +K Q LE +KKALD HLDF+VGQTE+YS +L++ Sbjct: 191 LRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQ 249
>tr|B0JZA6|B0JZA6_HUMAN SRCAP protein OS=Homo sapiens GN=SRCAP PE=2 SV=1 Length = 3049
Score = 76.3 bits (186), Expect = 9e-13 Identities = 32/59 (54%), Positives = 49/59 (83%) Frame = -2
Query: 519 MRRLASNISKDVKKFWTKIEKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAE 343 +RR+AS ++KDV++FW+ +EK++ +K Q LE +KKALD HLDF+VGQTE+YS +L++ Sbjct: 168 LRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQ 226
>tr|Q4SFE5|Q4SFE5_TETNG Chromosome 2 SCAF14604, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00019136001 PE=4 SV=1 Length = 4522
Score = 73.9 bits (180), Expect = 4e-12 Identities = 34/71 (47%), Positives = 51/71 (71%) Frame = -2
Query: 519 MRRLASNISKDVKKFWTKIEKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEI 340 +RR+AS+I+K+V+ FW+ +EK++ YK Q LE +KKALD LDF+VGQTE+YS +L++ Sbjct: 1634 IRRVASSIAKEVRAFWSNVEKVVQYKQQSRLEEKRKKALDLQLDFIVGQTEKYSDLLSKS 1693
Query: 339 WMDAPTEELQP 307 E+ P Sbjct: 1694 LAPIKPSEIVP 1704
>tr|Q28EN0|Q28EN0_XENTR Novel protein (Fragment) OS=Xenopus tropicalis GN=TGas049i04.1-001 PE=2 SV=1 Length = 505
Score = 73.2 bits (178), Expect = 7e-12 Identities = 37/102 (36%), Positives = 61/102 (59%) Frame = -2
Query: 519 MRRLASNISKDVKKFWTKIEKLIMYKHQMVLEGIKKKALDKHLDFLVGQTERYSTMLAEI 340 +RR+A+ I+K+V++FW+ +EK++ +K Q LE +KKALD LDF+VGQTE+YS +L++ Sbjct: 166 LRRIATTIAKEVRQFWSNVEKVVQFKQQSRLEEKRKKALDLQLDFIVGQTEKYSDLLSQ- 224
Query: 339 WMDAPTEELQPANALEDMQDYAVSNADGEDFNLKQRPQVHNN 214 + E L P + + ++ G P V+ N Sbjct: 225 ---SLNETLLP---VSKSSSSCIGSSQGGSLRTSPTPSVYQN 260
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