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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920721
Clone id YMU001_000140_F09
Library
Length 502
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000140_F09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GATATTACCTGCAGGTACTCGCAGGAATTGTGTTTTACTGGAGACTGATGGCATAGGTCG
TGCTTTCACAATTTTAGTGTCTCTGTTTCTTTTATAACATTTTTGTCTTCTTGATTTCTG
GTTTGGAAAGTCAAAAAACTTTTCCACCCTTCCCCTTAAGAGTAATTGATCTCTCATATG
TTCTTTTTCAGATCCAGAATCTTCTAAGGTAGCTGAGTATTCATCTAACTCGTCATTCGC
ATCGTAATAGAGGTCAAGAAAAGACTTGTTGAGCTTTCATCAAGTCCTTTGTTTCCTCAT
CCTTGTTTTCAATGTTAAGGACTGACATCATTTGGATGGGAATTATGTCGTAGCCATCCT
CATTGCAAAATTGAGTAGGCATAGACGTATTCACGCATACATCCATTGTCGCTAAAATTT
GAGTCCACTCGAATGGTTCGAATAAATGTTCTGGAAAGGGTTCTGGTATGTAGGCTTTGT
CTATATAGTCCCTTTCTAGGAT
■■Homology search results ■■ -
sp_hit_id Q27180
Definition sp|Q27180|T1B_PARTE Trichocyst matrix protein T1-B OS=Paramecium tetraurelia
Align length 43
Score (bit) 33.1
E-value 0.74
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920721|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_F09.
         (502 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q27180|T1B_PARTE Trichocyst matrix protein T1-B OS=Paramecium...    33   0.74 
sp|O74454|STS5_SCHPO Protein sts5 OS=Schizosaccharomyces pombe G...    30   4.9  
sp|Q9R053|SCNBA_MOUSE Sodium channel protein type 11 subunit alp...    30   6.3  
sp|A1CQ63|MED16_ASPCL Mediator of RNA polymerase II transcriptio...    30   8.3  

>sp|Q27180|T1B_PARTE Trichocyst matrix protein T1-B OS=Paramecium
           tetraurelia GN=T1B PE=1 SV=1
          Length = 369

 Score = 33.1 bits (74), Expect = 0.74
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = -3

Query: 482 RQSLHTRTLSRTFIRT---IRVDSNFSDNGCMREYVYAYSILQ 363
           +QSL   +  +TFI+T   I V++NF+D G +RE + A++ L+
Sbjct: 201 QQSLKRHSTFQTFIKTLLEIAVEANFADQGALREILTAFNNLR 243


>sp|O74454|STS5_SCHPO Protein sts5 OS=Schizosaccharomyces pombe
            GN=sts5 PE=1 SV=1
          Length = 1066

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = -2

Query: 243  DANDELDEYSATLEDSGSEKEHMRDQLLLRG------RVEKFFDFPNQKSRRQKCYKRNR 82
            D +D+L  ++A LE  G    H + QLLLRG      R+  +    N  SRR    K  +
Sbjct: 905  DESDDLTHFTAPLERYGDIVVHYQLQLLLRGELASEKRLRVWSQAANDASRRLVISKFAQ 964

Query: 81   DTKI 70
            +T I
Sbjct: 965  ETSI 968


>sp|Q9R053|SCNBA_MOUSE Sodium channel protein type 11 subunit alpha
            OS=Mus musculus GN=Scn11a PE=1 SV=1
          Length = 1765

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 72   F*CLCFFYNIFVFLISGLESQKTFPPFPLRVIDLSYV 182
            F C+    +I   L+SGLE+   FPP   R++ L+ +
Sbjct: 1413 FDCVVVVLSIISTLVSGLENSNVFPPTLFRIVRLARI 1449


>sp|A1CQ63|MED16_ASPCL Mediator of RNA polymerase II transcription
           subunit 16 OS=Aspergillus clavatus GN=sin4 PE=3 SV=1
          Length = 957

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 111 RRQKCYKRNRDTKIVKARPMPSVSSKTQFLRVPAG 7
           RR + Y+R RD  I+K  P+ S+   T+    P+G
Sbjct: 830 RRTEMYRRTRDVDIIKKIPLRSLGPYTEVDAAPSG 864
tr_hit_id Q601W3
Definition tr|Q601W3|Q601W3_MYCH2 Putative uncharacterized protein OS=Mycoplasma hyopneumoniae (strain 232)
Align length 48
Score (bit) 34.3
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920721|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_F09.
         (502 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q601W3|Q601W3_MYCH2 Putative uncharacterized protein OS=Mycop...    34   3.3  
tr|Q4AAQ1|Q4AAQ1_MYCHJ Putative uncharacterized protein OS=Mycop...    34   3.3  
tr|Q4A8T2|Q4A8T2_MYCH7 Putative uncharacterized protein OS=Mycop...    34   3.3  
tr|A0ECG5|A0ECG5_PARTE Chromosome undetermined scaffold_9, whole...    33   7.4  
tr|A0DDL4|A0DDL4_PARTE Chromosome undetermined scaffold_466, who...    33   7.4  
tr|A0CS22|A0CS22_PARTE Chromosome undetermined scaffold_26, whol...    33   7.4  

>tr|Q601W3|Q601W3_MYCH2 Putative uncharacterized protein
           OS=Mycoplasma hyopneumoniae (strain 232) GN=mhp088 PE=4
           SV=1
          Length = 147

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 57  VVLSQF*CLCFFYNIFVFLISGLESQKTFPPFPLRVIDLSYVLFQIQN 200
           +VL+ F CL FF N+F+ +         F  +     +LSY+ FQIQN
Sbjct: 60  IVLASFICLTFFINLFLAI---YREVMKFKDYKKAQRELSYIFFQIQN 104


>tr|Q4AAQ1|Q4AAQ1_MYCHJ Putative uncharacterized protein
           OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 /
           NCTC 10110) GN=MHJ_0076 PE=4 SV=2
          Length = 166

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 57  VVLSQF*CLCFFYNIFVFLISGLESQKTFPPFPLRVIDLSYVLFQIQN 200
           +VL+ F CL FF N+F+ +         F  +     +LSY+ FQIQN
Sbjct: 79  IVLASFICLTFFINLFLAI---YREVMKFKDYKKAQRELSYIFFQIQN 123


>tr|Q4A8T2|Q4A8T2_MYCH7 Putative uncharacterized protein
           OS=Mycoplasma hyopneumoniae (strain 7448)
           GN=MHP7448_0080 PE=4 SV=2
          Length = 166

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 57  VVLSQF*CLCFFYNIFVFLISGLESQKTFPPFPLRVIDLSYVLFQIQN 200
           +VL+ F CL FF N+F+ +         F  +     +LSY+ FQIQN
Sbjct: 79  IVLASFICLTFFINLFLAI---YREVMKFKDYKKAQRELSYIFFQIQN 123


>tr|A0ECG5|A0ECG5_PARTE Chromosome undetermined scaffold_9, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00003851001 PE=4 SV=1
          Length = 369

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = -3

Query: 482 RQSLHTRTLSRTFIRT---IRVDSNFSDNGCMREYVYAYSILQ 363
           +QSL   +  +TFI+T   I V++NF+D G +RE + A++ L+
Sbjct: 201 QQSLKRHSTFQTFIKTLLEIAVEANFADQGALREILTAFNNLR 243


>tr|A0DDL4|A0DDL4_PARTE Chromosome undetermined scaffold_466, whole
           genome shotgun sequence. (Fragment) OS=Paramecium
           tetraurelia GN=GSPATT00039438001 PE=4 SV=1
          Length = 227

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = -3

Query: 482 RQSLHTRTLSRTFIRT---IRVDSNFSDNGCMREYVYAYSILQ 363
           +QSL   +  +TFI+T   I V++NF+D G +RE + A++ L+
Sbjct: 59  QQSLKRHSTFQTFIKTLLEIAVEANFADQGALREILTAFNNLR 101


>tr|A0CS22|A0CS22_PARTE Chromosome undetermined scaffold_26, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00009861001 PE=4 SV=1
          Length = 369

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = -3

Query: 482 RQSLHTRTLSRTFIRT---IRVDSNFSDNGCMREYVYAYSILQ 363
           +QSL   +  +TFI+T   I V++NF+D G +RE + A++ L+
Sbjct: 201 QQSLKRHSTFQTFIKTLLEIAVEANFADQGALREILTAFNNLR 243