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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920722
Clone id YMU001_000140_F10
Library
Length 434
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000140_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTTTTTTTTTGATGCAATGATATCCTTTCAATGGCACTCCCATCGAACAAATAAT
AAGACCAGAAACCATGGTACATAGATCCACGAATTCTTCTCAGCTACTTTCTATTTACAC
ATGAATATAGTCATCCTTGTGTACATGACTAAGCAAGCCAGAGTCCAAGGAAACCTATGC
CACAAAGAAAAAACACATCCAGTGCATGCAGAACACACTGTATCCGAAGGCCAAGTCGTA
TGTCACTGCCTTATTCCAGACTTTGTGACAAAATCTTACGTAAAAGCTGCAGCATTCTCA
TTCTCTTGTACTTAACATTCTAAAAATATATCCTCGCACAGCCCATTTTCAAAAATACAA
CAGACTTTGGACAAAACATTGGAGCCACATGTCTGAGCTTACATAATGCACATTTACTTG
AACATTGATGTTAG
■■Homology search results ■■ -
sp_hit_id Q0BSV4
Definition sp|Q0BSV4|NHAA_GRABC Na(+)/H(+) antiporter nhaA OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1)
Align length 59
Score (bit) 33.5
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920722|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_F10.
         (419 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0BSV4|NHAA_GRABC Na(+)/H(+) antiporter nhaA OS=Granulibacter...    33   0.34 
sp|Q6CUB5|PFA4_KLULA Palmitoyltransferase PFA4 OS=Kluyveromyces ...    31   1.7  
sp|Q4WZL8|PFA3_ASPFU Palmitoyltransferase pfa3 OS=Aspergillus fu...    31   1.7  
sp|Q5Y5T1|ZDH20_MOUSE Probable palmitoyltransferase ZDHHC20 OS=M...    31   2.2  
sp|Q5AGV7|PFA4_CANAL Palmitoyltransferase PFA4 OS=Candida albica...    30   2.9  
sp|Q7S7C5|PFA3_NEUCR Palmitoyltransferase PFA3 OS=Neurospora cra...    30   2.9  
sp|Q555N7|ZDHC4_DICDI Putative ZDHHC-type palmitoyltransferase 4...    30   3.8  
sp|Q75CB4|PFA4_ASHGO Palmitoyltransferase PFA4 OS=Ashbya gossypi...    30   3.8  
sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5...    30   3.8  
sp|Q12006|PFA4_YEAST Palmitoyltransferase PFA4 OS=Saccharomyces ...    30   4.9  
sp|Q6FVE6|PFA4_CANGA Palmitoyltransferase PFA4 OS=Candida glabra...    30   4.9  
sp|Q6BMV2|PFA3_DEBHA Palmitoyltransferase PFA3 OS=Debaryomyces h...    30   4.9  
sp|Q5W0Z9|ZDH20_HUMAN Probable palmitoyltransferase ZDHHC20 OS=H...    29   6.4  
sp|Q4IA62|PFA3_GIBZE Palmitoyltransferase PFA3 OS=Gibberella zea...    29   6.4  
sp|Q03248|BUP1_RAT Beta-ureidopropionase OS=Rattus norvegicus GN...    29   6.4  
sp|Q5RBM6|BUP1_PONAB Beta-ureidopropionase OS=Pongo abelii GN=UP...    29   6.4  
sp|Q8VC97|BUP1_MOUSE Beta-ureidopropionase OS=Mus musculus GN=Up...    29   6.4  
sp|Q9UBR1|BUP1_HUMAN Beta-ureidopropionase OS=Homo sapiens GN=UP...    29   6.4  
sp|Q0WQK2|ZDHC9_ARATH Probable S-acyltransferase At3g26935 OS=Ar...    29   8.4  
sp|Q9ESG8|ZDH16_MOUSE Probable palmitoyltransferase ZDHHC16 OS=M...    29   8.4  
sp|Q4R7E2|ZDH16_MACFA Probable palmitoyltransferase ZDHHC16 OS=M...    29   8.4  
sp|Q969W1|ZDH16_HUMAN Probable palmitoyltransferase ZDHHC16 OS=H...    29   8.4  
sp|Q58CU4|ZDH16_BOVIN Probable palmitoyltransferase ZDHHC16 OS=B...    29   8.4  
sp|Q6BLY8|PFA4_DEBHA Palmitoyltransferase PFA4 OS=Debaryomyces h...    29   8.4  
sp|Q6FW70|PFA3_CANGA Palmitoyltransferase PFA3 OS=Candida glabra...    29   8.4  

>sp|Q0BSV4|NHAA_GRABC Na(+)/H(+) antiporter nhaA OS=Granulibacter
           bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=nhaA
           PE=3 SV=1
          Length = 383

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -2

Query: 193 HALDVFFLCGIGF-LGLWLA*SCTQG*LYSCVNRK*LRRIRGSMYHGFWSYYLFDGSAI 20
           H + + FLCGIGF + L++A     G   + VN+  L  + GSM  G   Y L  G A+
Sbjct: 324 HRIGIAFLCGIGFTMSLFIAILAFPG--TAAVNQIKLGILSGSMLSGLCGYILLRGPAV 380


>sp|Q6CUB5|PFA4_KLULA Palmitoyltransferase PFA4 OS=Kluyveromyces
           lactis GN=PFA4 PE=3 SV=1
          Length = 377

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 200 CSACTGCVFSLWHRFPWTLACL 135
           C  C  CV ++ H  PWTL C+
Sbjct: 94  CKTCNQCVLAMDHHCPWTLNCV 115


>sp|Q4WZL8|PFA3_ASPFU Palmitoyltransferase pfa3 OS=Aspergillus
           fumigatus GN=pfa3 PE=3 SV=1
          Length = 548

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 8/57 (14%)
 Frame = -1

Query: 200 CSACTGCVFSLWHRFPWTLACLVMYTR--------MTIFMCK*KVAEKNSWIYVPWF 54
           CS C  CV  + H  PW   C+ +Y           T   C    A   +WI+   F
Sbjct: 146 CSTCKRCVLKMDHHCPWLATCVGLYNYKAFLLFLIYTSLFCWVDFAVSATWIWTEVF 202


>sp|Q5Y5T1|ZDH20_MOUSE Probable palmitoyltransferase ZDHHC20 OS=Mus
           musculus GN=Zdhhc20 PE=2 SV=1
          Length = 380

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 200 CSACTGCVFSLWHRFPWTLACLVMYTRMTIFM 105
           CSAC  CV  + H  PW   C V +T    FM
Sbjct: 142 CSACDRCVLKMDHHCPWVNNC-VGFTNYKFFM 172


>sp|Q5AGV7|PFA4_CANAL Palmitoyltransferase PFA4 OS=Candida albicans
           GN=PFA4 PE=3 SV=1
          Length = 446

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 215 PSDTVCSACTGCVFSLWHRFPWTLACL 135
           P    C  C  CV  + H  PWTL C+
Sbjct: 125 PRSHHCKICQQCVLQMDHHCPWTLNCV 151


>sp|Q7S7C5|PFA3_NEUCR Palmitoyltransferase PFA3 OS=Neurospora crassa
           GN=pfa-3 PE=3 SV=2
          Length = 598

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
 Frame = -1

Query: 200 CSACTGCVFSLWHRFPWTLACL--------VMYTRMTIFMCK*KVAEKNSWIY 66
           CS C  CV  + H  PW   C+        +++   T   C    A   SW++
Sbjct: 124 CSTCRRCVLKMDHHCPWLATCVGLRNHKAFLLFLIYTSVFCWVSFAGSASWVW 176


>sp|Q555N7|ZDHC4_DICDI Putative ZDHHC-type palmitoyltransferase 4
           OS=Dictyostelium discoideum GN=DDB_G0274251 PE=3 SV=1
          Length = 358

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 200 CSACTGCVFSLWHRFPWTLACLVMYTRMTIFM 105
           CS C  CV  + H  PW   C+  Y     F+
Sbjct: 143 CSVCDKCVLKMDHHCPWIGGCVGFYNYRYFFL 174


>sp|Q75CB4|PFA4_ASHGO Palmitoyltransferase PFA4 OS=Ashbya gossypii
           GN=PFA4 PE=3 SV=1
          Length = 375

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 200 CSACTGCVFSLWHRFPWTLACL 135
           C  C  CV  + H  PWT+ CL
Sbjct: 94  CKRCNQCVLVMDHHCPWTMNCL 115


>sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5
            OS=Homo sapiens GN=CHD5 PE=2 SV=1
          Length = 1954

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 254  VTKSGIRQ*HTTWPSDTVCSACTGCVFSLWHRFP--WTLACLVMY 126
            +   G  + HT W ++   +  +G ++ +WHR    W LA +V +
Sbjct: 1707 IADGGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLAGIVTH 1751


>sp|Q12006|PFA4_YEAST Palmitoyltransferase PFA4 OS=Saccharomyces
           cerevisiae GN=PFA4 PE=1 SV=1
          Length = 378

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 200 CSACTGCVFSLWHRFPWTLACL 135
           C  C  CV  + H  PWT+ C+
Sbjct: 94  CKTCNQCVLMMDHHCPWTMNCV 115
tr_hit_id Q2H5R1
Definition tr|Q2H5R1|Q2H5R1_CHAGB Putative uncharacterized protein OS=Chaetomium globosum
Align length 73
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920722|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_F10.
         (419 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2H5R1|Q2H5R1_CHAGB Putative uncharacterized protein OS=Chaet...    35   1.4  
tr|Q5CY95|Q5CY95_CRYPV DHHC family palmitoyltransferase, 4 trans...    34   4.1  
tr|Q7RN67|Q7RN67_PLAYO DHHC zinc finger domain, putative OS=Plas...    33   7.0  
tr|Q4YTP5|Q4YTP5_PLABE Putative uncharacterized protein OS=Plasm...    33   7.0  
tr|Q4X2B6|Q4X2B6_PLACH Putative uncharacterized protein OS=Plasm...    33   7.0  
tr|Q9D705|Q9D705_MOUSE Putative uncharacterized protein OS=Mus m...    33   9.2  
tr|Q9D6T4|Q9D6T4_MOUSE Putative uncharacterized protein OS=Mus m...    33   9.2  
tr|Q9CQH1|Q9CQH1_MOUSE Putative uncharacterized protein OS=Mus m...    33   9.2  
tr|A7F178|A7F178_SCLS1 Putative uncharacterized protein OS=Scler...    33   9.2  

>tr|Q2H5R1|Q2H5R1_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_06004 PE=4 SV=1
          Length = 222

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
 Frame = +3

Query: 66  IDPRILLSYFLFTHEYSHPCVHD*ASQSPRKPMPQ------RKNTSSACRTHCIRRPSRM 227
           ID R L + FL     SHP  H  ASQ+   P  Q        NT SA R H     +++
Sbjct: 114 IDLRALRNEFLRLQAASHPDFHHSASQTSPTPPTQGNNNNNNTNTKSAARLHAEATSAQI 173

Query: 228 SLPYSRLCDKILR 266
           +  Y  L   +LR
Sbjct: 174 NAAYKTLSSPLLR 186


>tr|Q5CY95|Q5CY95_CRYPV DHHC family palmitoyltransferase, 4
           transmembrane domains plus possible signal peptide
           (Fragment) OS=Cryptosporidium parvum Iowa II
           GN=cgd7_3200 PE=4 SV=1
          Length = 331

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -1

Query: 200 CSACTGCVFSLWHRFPWTLACLVMYTRMTIFMCK*KVAEKNSWIYVPWFLVLLF 39
           CS C  C+ ++ H  PW   C+ +Y R    +         +W ++  FL+ +F
Sbjct: 173 CSICNKCILNMDHHCPWIGQCVGLYNRKYFILFL-------AWSFLSCFLISIF 219


>tr|Q7RN67|Q7RN67_PLAYO DHHC zinc finger domain, putative
           OS=Plasmodium yoelii yoelii GN=PY01955 PE=4 SV=1
          Length = 284

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -1

Query: 218 WPSDTV--CSACTGCVFSLWHRFPWTLACLVMYTR 120
           W  D    CSAC  CV ++ H  PW   C+  Y R
Sbjct: 106 WKPDRTHHCSACNRCVLNMDHHCPWINNCVGFYNR 140


>tr|Q4YTP5|Q4YTP5_PLABE Putative uncharacterized protein
           OS=Plasmodium berghei GN=PB001212.02.0 PE=4 SV=1
          Length = 284

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -1

Query: 218 WPSDTV--CSACTGCVFSLWHRFPWTLACLVMYTR 120
           W  D    CSAC  CV ++ H  PW   C+  Y R
Sbjct: 106 WKPDRTHHCSACNRCVLNMDHHCPWINNCVGFYNR 140


>tr|Q4X2B6|Q4X2B6_PLACH Putative uncharacterized protein
           OS=Plasmodium chabaudi GN=PC000444.03.0 PE=4 SV=1
          Length = 298

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -1

Query: 218 WPSDTV--CSACTGCVFSLWHRFPWTLACLVMYTR 120
           W  D    CSAC  CV ++ H  PW   C+  Y R
Sbjct: 106 WKPDRTHHCSACNRCVLNMDHHCPWINNCVGFYNR 140


>tr|Q9D705|Q9D705_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=2310042E22Rik PE=2 SV=1
          Length = 294

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 330 WAVRGYIFRMLSTRE*ECCSFYVRFCHKVWNKAVTYDLAFGYSVFCMH 187
           W ++ ++  +LST   + C  Y+ F  + W      DLAF    FC H
Sbjct: 188 WVLKSWMALVLSTWMLQICEMYIPFTGQPWRADNPTDLAFITIFFCWH 235


>tr|Q9D6T4|Q9D6T4_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=2310042E22Rik PE=2 SV=1
          Length = 316

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 330 WAVRGYIFRMLSTRE*ECCSFYVRFCHKVWNKAVTYDLAFGYSVFCMH 187
           W ++ ++  +LST   + C  Y+ F  + W      DLAF    FC H
Sbjct: 187 WVLKSWMALVLSTWMLQICEMYIPFTGQPWRADNPTDLAFITIFFCWH 234


>tr|Q9CQH1|Q9CQH1_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=2310042E22Rik PE=2 SV=1
          Length = 294

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 330 WAVRGYIFRMLSTRE*ECCSFYVRFCHKVWNKAVTYDLAFGYSVFCMH 187
           W ++ ++  +LST   + C  Y+ F  + W      DLAF    FC H
Sbjct: 188 WVLKSWMALVLSTWMLQICEMYIPFTGQPWRADNPTDLAFITIFFCWH 235


>tr|A7F178|A7F178_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_11348 PE=4 SV=1
          Length = 457

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 11/56 (19%)
 Frame = -1

Query: 200 CSACTGCVFSLWHRFPWTLACL-----------VMYTRMTIFMCK*KVAEKNSWIY 66
           CS C  CV  + H  PW   C+           ++YT +  F+C    A   SW++
Sbjct: 107 CSTCGICVLKMDHHCPWLATCVGLRNYKAFLLFLIYTTLFCFLC---FAVSGSWVW 159