BP920729
Clone id YMU001_000140_G08
Library
Length 493
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000140_G08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TTTTTTACACTTGAAGCCAGAGCTGAGTAAATATATACCATTACTAGACCATACAGGTAC
CTGTTATCAAGGTGCCACATCTTAACCATTGCATCACTCTGTACATGTACACTTGAATTA
CAACAGCGCTTCGAAGCCTAAGAGTTTCAAGAGCTTGTTTGCATCACACACTTTCATTCC
TTCTTCCCTGCACTTGATCCAATCTGTGCATTTAAGATTGCTTTCTCCAACTCCTTGGAA
ACATCATCGCCATTGCTCACAGCAGTAAAATTCGATTTGGAATACAAGTCCTCTCTCCTC
GGCGAAGCTTTCTTACTCTTTGGACCTTGGACGTTATTGTTGCTACCTTCTCTCCCCATC
CAGGAAGGTGATGGTGCCTCCAAACTAGAAGATTTGTGAGGAAGCCTTGGCATTGACGAA
CTGTCTTTAGGAATACCATCTGCTACTCCATTTGAAGTCCAATAAGAGCTCTTAGTCTCA
ACATGAGATCTCA
■■Homology search results ■■ -
sp_hit_id P32499
Definition sp|P32499|NUP2_YEAST Nucleoporin NUP2 OS=Saccharomyces cerevisiae
Align length 98
Score (bit) 35.8
E-value 0.11
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920729|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_G08.
(493 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P32499|NUP2_YEAST Nucleoporin NUP2 OS=Saccharomyces cerevisia... 36 0.11
sp|Q9VXT5|C19L2_DROME CWF19-like protein 2 homolog OS=Drosophila... 33 0.70
sp|P39928|SLN1_YEAST Osmosensing histidine protein kinase SLN1 O... 32 1.6
sp|Q17RH7|TPRXL_HUMAN Putative protein TPRXL OS=Homo sapiens GN=... 32 2.0
sp|P23497|SP100_HUMAN Nuclear autoantigen Sp-100 OS=Homo sapiens... 32 2.0
sp|Q8BDD6|VE2_BPV3 Regulatory protein E2 OS=Bovine papillomaviru... 31 3.5
sp|Q29EQ3|RNO_DROPS PHD finger protein rhinoceros OS=Drosophila ... 31 3.5
sp|P11088|FILA_MOUSE Filaggrin (Fragment) OS=Mus musculus GN=Flg... 31 3.5
sp|Q9USR9|CENPC_SCHPO Centromere protein 3 OS=Schizosaccharomyce... 31 3.5
sp|P54696|MYOH_DICDI Myosin IH heavy chain OS=Dictyostelium disc... 30 4.5
sp|Q3SZY7|ZFAN6_BOVIN AN1-type zinc finger protein 6 OS=Bos taur... 30 5.9
sp|Q55E69|SYS1_DICDI Protein SYS1 homolog OS=Dictyostelium disco... 30 5.9
sp|Q2H102|BST1_CHAGB GPI inositol-deacylase OS=Chaetomium globos... 30 5.9
sp|P30189|TOP1_DROME DNA topoisomerase 1 OS=Drosophila melanogas... 30 7.8
sp|Q5KME7|PRP5_CRYNE Pre-mRNA-processing ATP-dependent RNA helic... 30 7.8
sp|Q4WHB7|JHD1_ASPFU JmjC domain-containing histone demethylatio... 30 7.8

>sp|P32499|NUP2_YEAST Nucleoporin NUP2 OS=Saccharomyces cerevisiae
GN=NUP2 PE=1 SV=2
Length = 720

Score = 35.8 bits (81), Expect = 0.11
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Frame = -3

Query: 437 GIPKDSSSMPRLPHKSSSLEAPSPSWMGREGSNNNVQGPKSKKA----------SPRRED 288
G+P S + P S PS +E NNNV+ P SK A +
Sbjct: 372 GVPNSSKNETSKPVFSFGAATPSAKEASQEDDNNNVEKPSSKPAFNLISNAGTEKEKESK 431

Query: 287 LYSKSNFT-AVSNGDDVSKELEKAILNAQIGSSAGKKE 177
SK F+ +SNG + SK+ +K L + + KKE
Sbjct: 432 KDSKPAFSFGISNGSE-SKDSDKPSLPSAVDGENDKKE 468


>sp|Q9VXT5|C19L2_DROME CWF19-like protein 2 homolog OS=Drosophila
melanogaster GN=CG9213 PE=1 SV=2
Length = 687

Score = 33.1 bits (74), Expect = 0.70
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 10/104 (9%)
Frame = -3

Query: 464 YWTSNGVA-DGI--PKDSSSMPRLPHKSSSLEAPSPSWMGREGSNNNVQGPKSKKASPRR 294
YW SNG G P+D PH SSS + S W + P +K SP R
Sbjct: 200 YWKSNGTGLPGFQKPQDDDERQAKPHSSSSAQGSSRGW----------RKPGAKAPSPPR 249

Query: 293 EDLYSKSNFTAVSNGDDVSKEL-------EKAILNAQIGSSAGK 183
S+S + ++ D+ +E + + QI AGK
Sbjct: 250 R---SRSRSKSATSSDEEEEEAVQQPKSRPSCLTDEQINELAGK 290


>sp|P39928|SLN1_YEAST Osmosensing histidine protein kinase SLN1
OS=Saccharomyces cerevisiae GN=SLN1 PE=1 SV=1
Length = 1220

Score = 32.0 bits (71), Expect = 1.6
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Frame = -3

Query: 425 DSSSMPRLPH--KSSSLEAPSPSWMGREGSNNNVQGPKSKKASPRREDLYSKSNFTAVSN 252
D +P L + KS LE+ + S +G + +Q +K+ + E +Y K N ++
Sbjct: 745 DKYDLPTLSNHRKSVDLESSATS-LGSNRDTSTIQEEITKRNTVANESIYKKVNDREKAS 803

Query: 251 GDDVS-------KELEKAILNAQIGSSAGKKE 177
DDVS + AI N+Q + G +
Sbjct: 804 NDDVSSIVSTTTSSYDNAIFNSQFNKAPGSDD 835


>sp|Q17RH7|TPRXL_HUMAN Putative protein TPRXL OS=Homo sapiens
GN=TPRXL PE=2 SV=1
Length = 257

Score = 31.6 bits (70), Expect = 2.0
Identities = 31/126 (24%), Positives = 49/126 (38%)
Frame = -3

Query: 488 SHVETKSSYWTSNGVADGIPKDSSSMPRLPHKSSSLEAPSPSWMGREGSNNNVQGPKSKK 309
SH + S +S SSS P + SSS + SPS S+++ P S
Sbjct: 77 SHSSSSPSSSSSTSSPSSSSSSSSSSPSSSNSSSSSSSSSPS----SSSSSSSSSPSSSS 132

Query: 308 ASPRREDLYSKSNFTAVSNGDDVSKELEKAILNAQIGSSAGKKE*KCVMQTSS*NS*ASK 129
+SP S S+ ++ S+ S + ++ SS SS +S +S
Sbjct: 133 SSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSSSSPSSSSPSSSGSSPSSSNSSPSSSSSS 192

Query: 128 RCCNSS 111
+SS
Sbjct: 193 PSSSSS 198


>sp|P23497|SP100_HUMAN Nuclear autoantigen Sp-100 OS=Homo sapiens
GN=SP100 PE=1 SV=3
Length = 879

Score = 31.6 bits (70), Expect = 2.0
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Frame = -3

Query: 395 KSSSLEAPSPSWMGREGSNNNVQGPKSKKAS-----PRREDLYSKSNFTAVSNGDDVSKE 231
+SS EAP+ + G S + + P + +++ P R+ +S S+F+ +SNG+++ +
Sbjct: 408 ESSEEEAPAEASSGALRSKHGEKAPMTSRSTSTWRIPSRKRRFSSSDFSDLSNGEELQET 467

Query: 230 LEKAILNAQIGSSAGKKE*K---CVM 162
++ GS + E K CVM
Sbjct: 468 CSSSLRRGS-GSQPQEPENKKCSCVM 492


>sp|Q8BDD6|VE2_BPV3 Regulatory protein E2 OS=Bovine papillomavirus
type 3 GN=E2 PE=3 SV=1
Length = 414

Score = 30.8 bits (68), Expect = 3.5
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -3

Query: 431 PKDSSSMPRLPHKSSSLEAPSPSWMGREGSNNNVQGP 321
P S S PR PH P GR GS + QGP
Sbjct: 260 PSGSHSRPRAPHVPDQETGRPPGGGGRRGSRDQQQGP 296


>sp|Q29EQ3|RNO_DROPS PHD finger protein rhinoceros OS=Drosophila
pseudoobscura pseudoobscura GN=rno PE=3 SV=2
Length = 3313

Score = 30.8 bits (68), Expect = 3.5
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = -3

Query: 488 SHVETKSSYWTSNGVADGIPKDSSSMPRLPHKSSSLEAPSPSWMGREGSNNNVQGPKSKK 309
SH+ + +S TS+G + DSSS SS + S S G + + + KS
Sbjct: 811 SHIRSSASSHTSSGSSSS--GDSSSPNGTSSSDSSSASDSGSESGSSSAASGISRRKSTT 868

Query: 308 ASPRREDLYSKS 273
SP ++ Y++S
Sbjct: 869 GSPLKKQSYARS 880


>sp|P11088|FILA_MOUSE Filaggrin (Fragment) OS=Mus musculus GN=Flg
PE=2 SV=1
Length = 336

Score = 30.8 bits (68), Expect = 3.5
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Frame = -3

Query: 398 HKSSSLEAPSPSWMGREGSNNNVQGPKSKKASPRRED-----LYSKSNFTAVSNGDDVSK 234
H SS +A SP R GS Q P + S R D S+S+ + V +G V
Sbjct: 226 HSSSRHQADSPRVSARSGSGGRGQSPDASGRSSNRRDRPRQPSPSQSSDSQVHSGVQVEA 285

Query: 233 EL-EKAILNAQIGSSAG 186
+ + + N + GSS+G
Sbjct: 286 QRGQSSSANRRAGSSSG 302


>sp|Q9USR9|CENPC_SCHPO Centromere protein 3 OS=Schizosaccharomyces
pombe GN=cnp3 PE=2 SV=2
Length = 643

Score = 30.8 bits (68), Expect = 3.5
Identities = 21/89 (23%), Positives = 36/89 (40%)
Frame = -3

Query: 467 SYWTSNGVADGIPKDSSSMPRLPHKSSSLEAPSPSWMGREGSNNNVQGPKSKKASPRRED 288
++W + V + +D + +P LP + PS R+G KK +R
Sbjct: 427 AFWKNERVVYELHRDENRIPALPEVKQIIRVDDPSPSIRQG---------RKKRHAKRSG 477

Query: 287 LYSKSNFTAVSNGDDVSKELEKAILNAQI 201
+ KSN A SN + K +N ++
Sbjct: 478 VEIKSNLEAKSNDVEEYDAFYKDEINCEV 506


>sp|P54696|MYOH_DICDI Myosin IH heavy chain OS=Dictyostelium
discoideum GN=myoH PE=4 SV=2
Length = 2359

Score = 30.4 bits (67), Expect = 4.5
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3

Query: 365 SWMGREGSNNNVQGP-KSKKASPRREDLYSKSNFTAVSNGDDVSKELEKAILN 210
S+ G +NN V P KS ASP R + S S+ T + DD + IL+
Sbjct: 1087 SFEGSTTTNNGVTSPPKSSPASPIRNSINSNSDTTISGSSDDSIDNTDSLILS 1139


tr_hit_id A2EVM4
Definition tr|A2EVM4|A2EVM4_TRIVA Putative uncharacterized protein OS=Trichomonas vaginalis G3
Align length 85
Score (bit) 37.0
E-value 0.49
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920729|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_G08.
(493 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A2EVM4|A2EVM4_TRIVA Putative uncharacterized protein OS=Trich... 37 0.49
tr|O82974|O82974_BACSP A2-5a orf5; hypothetical protein OS=Bacil... 36 0.84
tr|B5VNM6|B5VNM6_YEAS6 YLR335Wp-like protein OS=Saccharomyces ce... 36 1.1
tr|B3RHK8|B3RHK8_YEAS1 Nucleoporin OS=Saccharomyces cerevisiae (... 36 1.1
tr|A7A1L6|A7A1L6_YEAS7 Nucleoporin OS=Saccharomyces cerevisiae (... 36 1.1
tr|Q5AYQ8|Q5AYQ8_EMENI Putative uncharacterized protein OS=Emeri... 35 1.4
tr|Q3MJK7|Q3MJK7_9ANNE Cement protein 3B variant 3 OS=Phragmatop... 35 1.9
tr|B4NEZ3|B4NEZ3_DROWI GK22814 OS=Drosophila willistoni GN=GK228... 35 2.4
tr|A2EVM7|A2EVM7_TRIVA DNA-directed RNA polymerase, omega subuni... 34 3.2
tr|B2RXP9|B2RXP9_MOUSE D6Ertd527e protein OS=Mus musculus GN=D6E... 34 4.2
tr|A8STM0|A8STM0_9FIRM Putative uncharacterized protein OS=Copro... 34 4.2
tr|Q0TZ89|Q0TZ89_PHANO Putative uncharacterized protein OS=Phaeo... 34 4.2
tr|B8M0Y7|B8M0Y7_9EURO DDHD domain protein OS=Talaromyces stipit... 34 4.2
tr|B6K9R1|B6K9R1_TOXGO FF domain-containing protein OS=Toxoplasm... 33 5.5
tr|B3MBK1|B3MBK1_DROAN GF11577 OS=Drosophila ananassae GN=GF1157... 33 5.5
tr|A2HJM9|A2HJM9_TRIVA Putative uncharacterized protein OS=Trich... 33 5.5
tr|B8PKH6|B8PKH6_9APHY Predicted protein OS=Postia placenta Mad-... 33 5.5
tr|B4U5K7|B4U5K7_HYDS0 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, ... 33 7.1
tr|Q2PHU5|Q2PHU5_LUTCR Dentin matrix protein 1 (Fragment) OS=Lut... 33 7.1
tr|A2E667|A2E667_TRIVA Extensin-like region family protein (Frag... 33 7.1
tr|Q5KHV3|Q5KHV3_CRYNE Guanine nucleotide exchange factor, putat... 33 7.1
tr|Q5KHV2|Q5KHV2_CRYNE Guanine nucleotide exchange factor, putat... 33 7.1
tr|B6HVT5|B6HVT5_PENCH Pc22g23480 protein OS=Penicillium chrysog... 33 7.1
tr|Q1E3X6|Q1E3X6_COCIM Putative uncharacterized protein OS=Cocci... 33 7.3
tr|Q1JSU7|Q1JSU7_TOXGO Putative uncharacterized protein OS=Toxop... 33 9.3

>tr|A2EVM4|A2EVM4_TRIVA Putative uncharacterized protein
OS=Trichomonas vaginalis G3 GN=TVAG_193730 PE=4 SV=1
Length = 695

Score = 37.0 bits (84), Expect = 0.49
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = -3

Query: 428 KDSSSMPRLPHKSSSLEAPSPSWMGREGSNNNVQGPKSKKASPRREDLYSKSN-FTAVSN 252
K+ S+P + KSSS+E + N+ + KK S ++ L SK N ++
Sbjct: 352 KELESIPTVEDKSSSVEEEINNINSHINEKNSKNAEQEKKNSELQQQLESKKNELESIPT 411

Query: 251 GDDVSKELEKAI--LNAQIGSSAGK 183
+D S ELE + +N+QI S K
Sbjct: 412 VEDKSSELENELKSINSQINSKLSK 436


>tr|O82974|O82974_BACSP A2-5a orf5; hypothetical protein OS=Bacillus
sp. PE=4 SV=1
Length = 375

Score = 36.2 bits (82), Expect = 0.84
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = -3

Query: 428 KDSSSMPRLPHKSSSLEAPSPSW---MGREGSNNNVQGPKSKKASPRREDLYSKSNFTAV 258
+ S + R+PH S S +P S MG GS N + P +P R ++ K+N
Sbjct: 35 RTSDNQNRIPHSSGSSHSPIASVNQPMGNSGSQRNSRAPYQ---TPNRNEISKKTNRIPK 91

Query: 257 SNGDDVSKELEKAILNAQIG 198
N D + + + + + N IG
Sbjct: 92 ENIDAIFQHINELLDNEWIG 111


>tr|B5VNM6|B5VNM6_YEAS6 YLR335Wp-like protein OS=Saccharomyces
cerevisiae (strain AWRI1631) GN=AWRI1631_123630 PE=4
SV=1
Length = 720

Score = 35.8 bits (81), Expect = 1.1
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Frame = -3

Query: 437 GIPKDSSSMPRLPHKSSSLEAPSPSWMGREGSNNNVQGPKSKKA----------SPRRED 288
G+P S + P S PS +E NNNV+ P SK A +
Sbjct: 372 GVPNSSKNETSKPVFSFGAATPSAKEASQEDDNNNVEKPSSKPAFNFISNAGTEKEKESK 431

Query: 287 LYSKSNFT-AVSNGDDVSKELEKAILNAQIGSSAGKKE 177
SK F+ +SNG + SK+ +K L + + KKE
Sbjct: 432 KDSKPAFSFGISNGSE-SKDSDKPSLPSAVDGENDKKE 468


>tr|B3RHK8|B3RHK8_YEAS1 Nucleoporin OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=SCRG_04280 PE=4 SV=1
Length = 720

Score = 35.8 bits (81), Expect = 1.1
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Frame = -3

Query: 437 GIPKDSSSMPRLPHKSSSLEAPSPSWMGREGSNNNVQGPKSKKA----------SPRRED 288
G+P S + P S PS +E NNNV+ P SK A +
Sbjct: 372 GVPNSSKNETSKPVFSFGAATPSAKEASQEDDNNNVEKPSSKPAFNFISNAGTEKEKESK 431

Query: 287 LYSKSNFT-AVSNGDDVSKELEKAILNAQIGSSAGKKE 177
SK F+ +SNG + SK+ +K L + + KKE
Sbjct: 432 KDSKPAFSFGISNGSE-SKDSDKPSLPSAVDGENDKKE 468


>tr|A7A1L6|A7A1L6_YEAS7 Nucleoporin OS=Saccharomyces cerevisiae
(strain YJM789) GN=NUP2 PE=4 SV=1
Length = 720

Score = 35.8 bits (81), Expect = 1.1
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Frame = -3

Query: 437 GIPKDSSSMPRLPHKSSSLEAPSPSWMGREGSNNNVQGPKSKKA----------SPRRED 288
G+P S + P S PS +E NNNV+ P SK A +
Sbjct: 372 GVPNSSKNETSKPVFSFGAATPSAKEASQEDDNNNVEKPSSKPAFNFISNAGTEKEKESK 431

Query: 287 LYSKSNFT-AVSNGDDVSKELEKAILNAQIGSSAGKKE 177
SK F+ +SNG + SK+ +K L + + KKE
Sbjct: 432 KDSKPAFSFGISNGSE-SKDSDKPSLPSAVDGENDKKE 468


>tr|Q5AYQ8|Q5AYQ8_EMENI Putative uncharacterized protein
OS=Emericella nidulans GN=AN6572.2 PE=4 SV=1
Length = 767

Score = 35.4 bits (80), Expect = 1.4
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Frame = -3

Query: 440 DGIPKDSSSMPRLPHKSS-------SLEAPSPSWMGREGSNNNVQGPKSKKASPRREDLY 282
DG P SS+ P +SS +E PS + +NN G KASP++E+ Y
Sbjct: 67 DGSPSQSSTTSARPSESSPSTQKDQDIEPKIPSSVTGASTNN---GGGQLKASPQQEEFY 123

Query: 281 SKSNFTAVSNGDDVSKELEKAILNAQIG 198
S A E+ KA + Q+G
Sbjct: 124 QPSREPAAEPAGTPRVEVPKATSDTQVG 151


>tr|Q3MJK7|Q3MJK7_9ANNE Cement protein 3B variant 3 OS=Phragmatopoma
californica PE=2 SV=1
Length = 343

Score = 35.0 bits (79), Expect = 1.9
Identities = 28/124 (22%), Positives = 51/124 (41%)
Frame = -3

Query: 461 WTSNGVADGIPKDSSSMPRLPHKSSSLEAPSPSWMGREGSNNNVQGPKSKKASPRREDLY 282
++S+G + SSS SSS + S S+ G S+++ S +S
Sbjct: 28 YSSSGYSSSSSSSSSSSSSYSSSSSSYSSSSSSYSGSSSSSSSYSSSSSSSSSYSSSSSS 87

Query: 281 SKSNFTAVSNGDDVSKELEKAILNAQIGSSAGKKE*KCVMQTSS*NS*ASKRCCNSSVHV 102
S S++++ S+ S + ++ SS C +SS +S +S +SS
Sbjct: 88 SSSSYSSSSSSYSSSSSSSYSSSSSSSSSSYSSSSSGCSSSSSSSSSYSSSSSSSSSYSS 147

Query: 101 QSDA 90
S +
Sbjct: 148 SSSS 151


>tr|B4NEZ3|B4NEZ3_DROWI GK22814 OS=Drosophila willistoni GN=GK22814
PE=4 SV=1
Length = 763

Score = 34.7 bits (78), Expect = 2.4
Identities = 20/62 (32%), Positives = 35/62 (56%)
Frame = -3

Query: 395 KSSSLEAPSPSWMGREGSNNNVQGPKSKKASPRREDLYSKSNFTAVSNGDDVSKELEKAI 216
+ L+A S S GSNNN+ G KSK+ + R++L +++N N D+++ + K
Sbjct: 200 QQQQLQADSSS----SGSNNNIIGSKSKRLNNSRDNLNNRNN-----NNDNINNDNNKPT 250

Query: 215 LN 210
+N
Sbjct: 251 VN 252


>tr|A2EVM7|A2EVM7_TRIVA DNA-directed RNA polymerase, omega subunit
family protein OS=Trichomonas vaginalis G3 GN=TVAG_193760
PE=4 SV=1
Length = 5185

Score = 34.3 bits (77), Expect = 3.2
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = -3

Query: 416 SMPRLPHKSSSLEAPSPSWMGREGSNNNVQGPKSKKASPRREDLYSKSN-FTAVSNGDDV 240
S+P + KSS LE + N+ + KK S ++ L SK N ++ +D
Sbjct: 4899 SIPTVEDKSSELENEINNINSHINEKNSKNAEQEKKNSELQQQLESKKNELESIPTVEDK 4958

Query: 239 SKELEKAI--LNAQIGSSAGK 183
S ELE + +N+QI S K
Sbjct: 4959 SSELENELKSINSQINSKLSK 4979


>tr|B2RXP9|B2RXP9_MOUSE D6Ertd527e protein OS=Mus musculus
GN=D6Ertd527e PE=2 SV=1
Length = 462

Score = 33.9 bits (76), Expect = 4.2
Identities = 37/129 (28%), Positives = 49/129 (37%)
Frame = -3

Query: 476 TKSSYWTSNGVADGIPKDSSSMPRLPHKSSSLEAPSPSWMGREGSNNNVQGPKSKKASPR 297
T SS SN DSSS P H SSS + S S S N GP+ K
Sbjct: 331 TSSSNSQSNSSPRSSNTDSSSSPGNSHTSSSSSSSSSSSSSSSSSRGN-SGPRPSKTG-- 387

Query: 296 REDLYSKSNFTAVSNGDDVSKELEKAILNAQIGSSAGKKE*KCVMQTSS*NS*ASKRCCN 117
+ S+SN S+ D S + SS+ ++S +S S C+
Sbjct: 388 --SISSQSNSGPRSSNTDSSSSSSPGNIKTSSSSSS----------SNSSSSSHSSYSCS 435

Query: 116 SSVHVQSDA 90
SS H S +
Sbjct: 436 SSSHSSSSS 444