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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920733
Clone id YMU001_000140_H01
Library
Length 516
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000140_H01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTTTTTTTTTTTCAACAACAGATGTCATTTCATTCAAAAAGTTATGCCAGC
TGGCTCAAAATTATGTTCAAAGAGTTAGGAAAGTAAGTCCAACACATGTCATTTAGTCTA
CTTAGCTACTTTGGTAAAAAAGCCTACGATTCTAGGAATCAAGGCAATCGAGGCAGATGG
TGCTACCGGTGCAGCTGGTACAGCTGCTAGAGCAAGATTTATGTTGACTGTGTTTTGGAG
AGCAAACCTATTGGGGAGCCGCATCAAACTCGAGCCGCTCTGTGTATAAATGCTCACTCC
ATTGGCCCCACAAAACTTCAGAATTCTTTCCTCATTGAGGGGCTTGATGTGGTCTGTCCT
GATGGCAAGACCCAACCTCCTTCCAGCAAATTCTTTGTAAGTGGGGTACATGTCTGCTTT
CAAGGCCCTCTCCTGGATTATAGCTCCATCTCGAACACGTTGACCTACCTTGTCAGTGCC
TTGTAGACAGTGTTTGCAGGACCCGATAAACGCTTT
■■Homology search results ■■ -
sp_hit_id P15379
Definition sp|P15379|CD44_MOUSE CD44 antigen OS=Mus musculus
Align length 59
Score (bit) 32.0
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920733|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_H01.
         (495 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P15379|CD44_MOUSE CD44 antigen OS=Mus musculus GN=Cd44 PE=1 SV=3    32   1.6  
sp|Q5RC07|ES8L2_PONAB Epidermal growth factor receptor kinase su...    32   2.1  
sp|Q9H6S3|ES8L2_HUMAN Epidermal growth factor receptor kinase su...    32   2.1  
sp|Q6DFF4|INT9_XENLA Integrator complex subunit 9 OS=Xenopus lae...    31   2.8  
sp|P06909|CFAH_MOUSE Complement factor H OS=Mus musculus GN=Cfh ...    30   7.9  

>sp|P15379|CD44_MOUSE CD44 antigen OS=Mus musculus GN=Cd44 PE=1 SV=3
          Length = 778

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 220 SKPIGEPHQTRAALCINAHS--IGPTKLQNSFLIEGLDVVCPDGKTQPPSSKFFVSGVH 390
           S P+G+ HQT +    ++HS  + PT   N+ L+E L+   P   T P S     S +H
Sbjct: 492 SHPMGQGHQTESKDTDSSHSTTLQPTAAPNTHLVEDLNRTGPLSVTTPQSHSQNFSTLH 550


>sp|Q5RC07|ES8L2_PONAB Epidermal growth factor receptor kinase
           substrate 8-like protein 2 OS=Pongo abelii GN=EPS8L2
           PE=2 SV=1
          Length = 716

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 12/48 (25%)
 Frame = -1

Query: 318 LNEERILKFCGANGVSIYT------------QSGSSLMRLPNRFALQN 211
           LN+E + K CG  GV +Y+            QSGS L  L N+F   N
Sbjct: 662 LNKEELKKVCGEEGVRVYSQLTVQKAFLEKQQSGSELEELMNKFHSMN 709


>sp|Q9H6S3|ES8L2_HUMAN Epidermal growth factor receptor kinase
           substrate 8-like protein 2 OS=Homo sapiens GN=EPS8L2
           PE=1 SV=2
          Length = 715

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 12/48 (25%)
 Frame = -1

Query: 318 LNEERILKFCGANGVSIYT------------QSGSSLMRLPNRFALQN 211
           LN+E + K CG  GV +Y+            QSGS L  L N+F   N
Sbjct: 661 LNKEELKKVCGEEGVRVYSQLTMQKAFLEKQQSGSELEELMNKFHSMN 708


>sp|Q6DFF4|INT9_XENLA Integrator complex subunit 9 OS=Xenopus laevis
           GN=ints9 PE=2 SV=1
          Length = 658

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
 Frame = +1

Query: 238 PHQTRAALCI------NAHSIGPTKLQNSFLIEGLDVVCPDGKTQPPSSKFFVSGVHVCF 399
           P+Q  A  C+        + I  TKL     ++ L VVCP+  TQPP+++   S + +  
Sbjct: 435 PYQPLAMKCVYCPIDTRLNFIQVTKLLKE--VQPLHVVCPEQYTQPPATQSHRSDLMIDC 492

Query: 400 QGPLLDY 420
           Q P + Y
Sbjct: 493 QPPPMSY 499


>sp|P06909|CFAH_MOUSE Complement factor H OS=Mus musculus GN=Cfh
           PE=1 SV=1
          Length = 1234

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 373 RICWKEVGSCHQDRPHQAPQ*GKNSEVLWGQWSEHLYTE 257
           RI W  + +       + P   +NSE+L G WSE LY E
Sbjct: 6   RIIWLILWTVCAAEDCKGPPPRENSEILSGSWSEQLYPE 44
tr_hit_id B8CKP7
Definition tr|B8CKP7|B8CKP7_9GAMM Putative uncharacterized protein OS=Shewanella piezotolerans WP3
Align length 35
Score (bit) 36.6
E-value 0.68
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920733|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_H01.
         (495 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8CKP7|B8CKP7_9GAMM Putative uncharacterized protein OS=Shewa...    37   0.68 
tr|Q1MY04|Q1MY04_9GAMM Electron transfer flavoprotein-ubiquinone...    33   9.8  
tr|A8V9E4|A8V9E4_9BURK 3-hydroxybenzoate-6-hydroxylase OS=Burkho...    33   9.8  
tr|Q5CY32|Q5CY32_CRYPV Putative uncharacterized protein OS=Crypt...    33   9.8  
tr|Q5CMH5|Q5CMH5_CRYHO Putative uncharacterized protein OS=Crypt...    33   9.8  
tr|B0E1N9|B0E1N9_LACBS Predicted protein OS=Laccaria bicolor (st...    33   9.8  

>tr|B8CKP7|B8CKP7_9GAMM Putative uncharacterized protein
           OS=Shewanella piezotolerans WP3 GN=swp_1437 PE=4 SV=1
          Length = 274

 Score = 36.6 bits (83), Expect = 0.68
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +1

Query: 19  HSKSYASWLKIMFKELGK*V---QHMSFSLLSYFG 114
           HSK YASW  +M +E  + V   QH  +SL SY+G
Sbjct: 195 HSKDYASWSSVMMQEYQQLVEASQHQQYSLFSYYG 229


>tr|Q1MY04|Q1MY04_9GAMM Electron transfer flavoprotein-ubiquinone
           oxidoreductase OS=Oceanobacter sp. RED65 GN=RED65_07029
           PE=4 SV=1
          Length = 547

 Score = 32.7 bits (73), Expect = 9.8
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -1

Query: 450 KVGQRVRDGAIIQERALKADMYPTYKEFAGRRLGLAIRTDHIKPLNEE 307
           +VG  +  GA+I++RALK +++P YKE  G  L   +  D +  L  E
Sbjct: 47  EVGAHILSGAVIEDRALK-ELFPNYKEL-GAPLNTPVTKDEVYFLTGE 92


>tr|A8V9E4|A8V9E4_9BURK 3-hydroxybenzoate-6-hydroxylase
           OS=Burkholderia sp. NCIMB 10467 GN=mhbM PE=4 SV=1
          Length = 410

 Score = 32.7 bits (73), Expect = 9.8
 Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
 Frame = -1

Query: 447 VGQRVRDGAIIQERALKADM--------YPTYKEFAGRRLGLAIRTDHIKPLNEERILKF 292
           VGQ VRD A+  ER L  D          P  +EF   R G      H   L+       
Sbjct: 64  VGQAVRDSAVFTERLLLMDAVDCHEVANLPVGQEFR-ERFGNPYAVIHRADLHNALYAAV 122

Query: 291 CGANGVSIYTQSGSSLMRLPNRFALQNT 208
           C   GV ++T S  S ++  ++ A   T
Sbjct: 123 CAHEGVRVHTDSRVSSVKFDDKSATVET 150


>tr|Q5CY32|Q5CY32_CRYPV Putative uncharacterized protein
            OS=Cryptosporidium parvum Iowa II GN=cgd7_3860 PE=4 SV=1
          Length = 1259

 Score = 32.7 bits (73), Expect = 9.8
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = -1

Query: 468  CLQGTDKVGQRVRDGAIIQERALKADMYPTYKEFAGR-RLGLAIRTDHIKPLNEERILKF 292
            C +G  ++  R+    I++++    +    Y E+  R +  + I  D+ K   EE++L F
Sbjct: 850  CQRGIRELAYRL----IVRDKPTNTEPEGKYWEYLPRNKFSILINADNSKA-REEKVLSF 904

Query: 291  CGANGVSIYTQSG 253
            C A  +SIY++ G
Sbjct: 905  CSAVYISIYSEKG 917


>tr|Q5CMH5|Q5CMH5_CRYHO Putative uncharacterized protein
            OS=Cryptosporidium hominis GN=Chro.70431 PE=4 SV=1
          Length = 1259

 Score = 32.7 bits (73), Expect = 9.8
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = -1

Query: 468  CLQGTDKVGQRVRDGAIIQERALKADMYPTYKEFAGR-RLGLAIRTDHIKPLNEERILKF 292
            C +G  ++  R+    I++++    +    Y E+  R +  + I  D+ K   EE++L F
Sbjct: 850  CQRGIRELAYRL----IVRDKPTNTEPEGKYWEYLPRNKFSILINADNSKA-REEKVLSF 904

Query: 291  CGANGVSIYTQSG 253
            C A  +SIY++ G
Sbjct: 905  CSAVYISIYSEKG 917


>tr|B0E1N9|B0E1N9_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_335202 PE=4 SV=1
          Length = 299

 Score = 32.7 bits (73), Expect = 9.8
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -1

Query: 474 KHCLQGTDKVGQRVRDGAIIQERALKADMYPTYKEFAGR-RLGLAIRTDHIKPLNEERIL 298
           +H L+GT KV     DG ++  R L+ D   TYK+   R   G ++RT   + + +ERI+
Sbjct: 21  RHRLRGTSKVASNASDGCLMVTRILQ-DSGLTYKKVVVRLSNGSSVRTREHRHIAQERII 79