NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920738
Clone id YMU001_000140_H06
Library
Length 364
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000140_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCCGGGCGAGATTTCTTGGCTCCAAGAAGTGGTTGAAACTGCGTGCGTTACGTCTTCTGT
GAGCCTGCTGCTCCACAATTCCAAGCTTGCTTTTTGCAATTCAGCCTGATTTCTTGTTTC
GGGTGCCCGTCAAGAAGATTTTAGGGTGCTTAACCGCAAATTAAGCAGTTGACGCAACCA
AAATTACGAAATTTGGCAGGATTTGGGCTTCGCTTGCCTAAGAACAGGCTCCGACATGGT
AAGAATCTGCATTCTTGGCTCATGAAGAAGGTAGAGACATGGGCTGCGGTTTGAGCAGGC
ACGAAGTGGCAGAGGAGCCTTTACCCAGCCCCAAAAGCAGGTCATCGCGTCACTCGTCCT
CGAC
■■Homology search results ■■ -
sp_hit_id P56400
Definition sp|P56400|GP1BB_MOUSE Platelet glycoprotein Ib beta chain OS=Mus musculus
Align length 44
Score (bit) 30.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920738|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_H06.
         (364 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P56400|GP1BB_MOUSE Platelet glycoprotein Ib beta chain OS=Mus...    30   3.8  
sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficienc...    30   4.9  
sp|Q77372|GAG_HV1AN Gag polyprotein OS=Human immunodeficiency vi...    30   4.9  
sp|P27316|RRPL_RVFVZ RNA-directed RNA polymerase OS=Rift valley ...    29   6.4  
sp|B2C4J1|NCAP_CHAVB Nucleoprotein OS=Chapare virus (isolate Hum...    29   6.4  

>sp|P56400|GP1BB_MOUSE Platelet glycoprotein Ib beta chain OS=Mus
           musculus GN=Gp1bb PE=1 SV=1
          Length = 206

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 302 VPAQTAAHVSTFFMSQECRFLPCRSLFLGKRSPNPAKFRNFGCV 171
           +PA  AAH+       +CR LP R+   G+  P  A +R+  CV
Sbjct: 78  LPALRAAHLGANPWRCDCRLLPLRAWLAGR--PERAPYRDLRCV 119


>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency
           virus type 1 (isolate ANT70 group O) GN=gag-pol PE=3
           SV=3
          Length = 1435

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -3

Query: 215 KRSPNPAKFRNFGCVNCLICG*AP*NLLDGHPKQEIRLNCKKQAWNCGAAGSQ 57
           +R  NP +    G + C  CG       +GH  +  R   KK  W CG  G Q
Sbjct: 383 QRGQNPIRK---GTIKCFNCG------KEGHIARNCRAPRKKGCWKCGQEGHQ 426


>sp|Q77372|GAG_HV1AN Gag polyprotein OS=Human immunodeficiency virus
           type 1 (isolate ANT70 group O) GN=gag PE=3 SV=3
          Length = 498

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -3

Query: 215 KRSPNPAKFRNFGCVNCLICG*AP*NLLDGHPKQEIRLNCKKQAWNCGAAGSQ 57
           +R  NP +    G + C  CG       +GH  +  R   KK  W CG  G Q
Sbjct: 383 QRGQNPIRK---GTIKCFNCG------KEGHIARNCRAPRKKGCWKCGQEGHQ 426


>sp|P27316|RRPL_RVFVZ RNA-directed RNA polymerase OS=Rift valley fever
            virus (strain ZH-548 M12) GN=L PE=3 SV=1
          Length = 2149

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +1

Query: 37   NCVRYVFCEPAAPQFQACFLQFSLISCFGCPSRRF*GA*PQIKQLTQPKLRNLAGFGLRL 216
            NC  +V CE  AP+F +  L+        C  +R      QIK + + +L  +  F L L
Sbjct: 2057 NC--WVRCESVAPKFISAILEI-------CEGKR------QIKGINRTRLSEIVEFVLNL 2101

Query: 217  PKNRLR 234
            PK + R
Sbjct: 2102 PKIKSR 2107


>sp|B2C4J1|NCAP_CHAVB Nucleoprotein OS=Chapare virus (isolate
           Human/Bolivia/810419/2003) GN=N PE=3 SV=1
          Length = 562

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 131 QEDFRVLNRKLSS*RNQNYE--IWQDLGFAC 217
           ++D +V++ KLSS + +NYE  +W D G  C
Sbjct: 468 RKDLKVVDVKLSSDQARNYEEQVWSDFGHLC 498
tr_hit_id Q8QDY9
Definition tr|Q8QDY9|Q8QDY9_9HIV1 Gag polyprotein (Fragment) OS=Human immunodeficiency virus 1
Align length 47
Score (bit) 33.5
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920738|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_H06.
         (364 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8QDY9|Q8QDY9_9HIV1 Gag polyprotein (Fragment) OS=Human immun...    33   5.5  
tr|Q8QDX0|Q8QDX0_9HIV1 Gag polyprotein OS=Human immunodeficiency...    33   5.5  
tr|Q2W3A2|Q2W3A2_MAGMM Acyl-coenzyme A synthetase/AMP-(Fatty) ac...    33   7.1  
tr|Q25C16|Q25C16_9PROT Benzoate-CoA ligase OS=Magnetospirillum s...    33   7.1  

>tr|Q8QDY9|Q8QDY9_9HIV1 Gag polyprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=gag PE=4 SV=1
          Length = 219

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 197 AKFRNFGCVNCLICG*AP*NLLDGHPKQEIRLNCKKQAWNCGAAGSQ 57
           + FR    + C  CG       DGHP +  R   KK  W CG  G Q
Sbjct: 101 SNFRGPKRIKCFNCG------KDGHPARNCRAPRKKGCWKCGKEGHQ 141


>tr|Q8QDX0|Q8QDX0_9HIV1 Gag polyprotein OS=Human immunodeficiency
           virus 1 GN=gag PE=4 SV=1
          Length = 498

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 197 AKFRNFGCVNCLICG*AP*NLLDGHPKQEIRLNCKKQAWNCGAAGSQ 57
           + FR    + C  CG       DGHP +  R   KK  W CG  G Q
Sbjct: 380 SNFRGPKRIKCFNCG------KDGHPARNCRAPRKKGCWKCGKEGHQ 420


>tr|Q2W3A2|Q2W3A2_MAGMM Acyl-coenzyme A synthetase/AMP-(Fatty) acid
           ligase OS=Magnetospirillum magneticum (strain AMB-1 /
           ATCC 700264) GN=amb2869 PE=4 SV=1
          Length = 528

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -2

Query: 357 TSDAMTCFWGWVKA---PLPLRACSNRSPCLYLLHEPRMQILTMSEPVLRQAKP 205
           T D  + FWG +KA   P+PL          Y+L + R ++L +SE +  + +P
Sbjct: 80  TVDFPSVFWGAIKAGIVPIPLNTLLTTGDYGYMLSDSRARVLVISEELFDKVEP 133


>tr|Q25C16|Q25C16_9PROT Benzoate-CoA ligase OS=Magnetospirillum sp.
           TS-6 GN=bcl PE=4 SV=1
          Length = 528

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -2

Query: 357 TSDAMTCFWGWVKA---PLPLRACSNRSPCLYLLHEPRMQILTMSEPVLRQAKP 205
           T D    FWG VKA   P+PL          Y+L + R ++L +SE +  + +P
Sbjct: 80  TVDFPAVFWGAVKAGIVPIPLNTLLTTGDYGYMLSDSRARVLVISEELFDKVEP 133