NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920742
Clone id YMU001_000140_H10
Library
Length 429
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000140_H10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AACTGTGTATAATCTTGAAGCAGTGGGTGAAGCTGAGATTGCAAGGATGAAGAAATCTGG
AAAGCCGAGATTTTAGCCGTGCCTTGTACAGTTGTATACCTGTGACCACTTTCTGTTTTG
AGACTACGTATTGCCATCCGAAATTCATCTACAGTAATTGTGGGTGACCCACATGTTTCT
GAACATATTTTTACACGTGGGCCTACCTGATTGCTGAAGGATTTGCATCTATATTATTGA
AGATGTGGAGCTGACAATAGCTCTATGACAACTAATCTTACTAACCATTTTCTGTCGACC
TATATGTGGGCTTGCGGATGCTATCGATTATGGGCATCTACCAAGTTTTGTATATCCATG
CACATTCTCATACCAGATACTTGTATGGAATACTAGGAGTCTAGACTGCCATCTGAGGGC
ACCAATTTT
■■Homology search results ■■ -
sp_hit_id A8MUX0
Definition sp|A8MUX0|KR10D_HUMAN Putative keratin-associated protein 10-like ENSP00000375147 OS=Homo sapiens
Align length 22
Score (bit) 31.2
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920742|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_H10.
         (429 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A8MUX0|KR10D_HUMAN Putative keratin-associated protein 10-lik...    31   1.8  
sp|Q9BYQ8|KRA49_HUMAN Keratin-associated protein 4-9 (Fragment) ...    30   4.1  
sp|Q9BYR0|KRA47_HUMAN Keratin-associated protein 4-7 OS=Homo sap...    30   4.1  
sp|A8MTL4|KR41X_HUMAN Putative keratin-associated protein 4-X OS...    30   4.1  
sp|O93512|GFRA4_CHICK GDNF family receptor alpha-4 OS=Gallus gal...    29   9.3  

>sp|A8MUX0|KR10D_HUMAN Putative keratin-associated protein 10-like
           ENSP00000375147 OS=Homo sapiens PE=3 SV=1
          Length = 517

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +3

Query: 114 CFETTYCHPKFIYSNCG*PTCF 179
           CFE T C P    SNC  P CF
Sbjct: 113 CFEATICEPSCSVSNCCQPVCF 134



 Score = 29.3 bits (64), Expect = 7.0
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 93  CIPVTTFCFETTYCHPKFIYSNCG*PTC 176
           C PV   CFE T C P    S+C  P C
Sbjct: 129 CQPV---CFEATVCEPSCSVSSCAQPVC 153



 Score = 28.9 bits (63), Expect = 9.1
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = +3

Query: 93  CIPVTTFCFETTYCHPKFIYSNCG*PTCF 179
           C PV   C E T C P    SNC  P CF
Sbjct: 89  CQPV---CCEATTCEPSCSVSNCYQPVCF 114


>sp|Q9BYQ8|KRA49_HUMAN Keratin-associated protein 4-9 (Fragment)
           OS=Homo sapiens GN=KRTAP4-9 PE=2 SV=1
          Length = 191

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 114 CFETTYCHPKFIYSNCG*PTC 176
           C ETT CHP+   S+C  P+C
Sbjct: 90  CCETTCCHPRCCISSCCRPSC 110


>sp|Q9BYR0|KRA47_HUMAN Keratin-associated protein 4-7 OS=Homo
           sapiens GN=KRTAP4-7 PE=2 SV=1
          Length = 210

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 114 CFETTYCHPKFIYSNCG*PTC 176
           C ETT CHP+   S+C  P+C
Sbjct: 69  CCETTCCHPRCCISSCCRPSC 89


>sp|A8MTL4|KR41X_HUMAN Putative keratin-associated protein 4-X
           OS=Homo sapiens PE=5 SV=1
          Length = 155

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 114 CFETTYCHPKFIYSNCG*PTC 176
           C ETT CHP+   S+C  P+C
Sbjct: 69  CCETTCCHPRCCISSCCRPSC 89


>sp|O93512|GFRA4_CHICK GDNF family receptor alpha-4 OS=Gallus gallus
           GN=GFRA4 PE=2 SV=1
          Length = 431

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 241 RCGADNSSMTTNLTNHFLSTYMWACGCYRLWASTKFCISMHILIPDTCME 390
           + G D  +   +     LS+ ++ C C R     K C+S++  I  T ME
Sbjct: 57  KLGPDAKNQCRSTVTALLSSQLYGCKCKRGMKKEKHCLSVYWSIHHTLME 106
tr_hit_id A4HB33
Definition tr|A4HB33|A4HB33_LEIBR Putative uncharacterized protein OS=Leishmania braziliensis
Align length 58
Score (bit) 36.2
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920742|Adiantum capillus-veneris mRNA, clone:
YMU001_000140_H10.
         (429 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4HB33|A4HB33_LEIBR Putative uncharacterized protein OS=Leish...    36   0.84 

>tr|A4HB33|A4HB33_LEIBR Putative uncharacterized protein
           OS=Leishmania braziliensis GN=LbrM20_V2.2720 PE=4 SV=1
          Length = 252

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 214 LKDLHLYY*RCGADNSSMTTNLTNHFLSTYMWACGCYRLWASTKF--CISMHILIPDT 381
           LK  H+YY    +D S +  N   H L T  W C   ++  STKF  C+  H + P++
Sbjct: 134 LKTRHVYY--ANSDESQVQWNPPTHELDTVYWYCSRCQVMISTKFRECLLCHSIRPES 189