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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920744
Clone id YMU001_000141_A01
Library
Length 427
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000141_A01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAAGTTGCACCAATAACCGTGCAAAACCTTGCACAAAATCACAAGTCAATATGACTTAAT
CGCTCATAAATATCTGACAAAATTTCGGCAGTCTCCTTTGTAACTGGAGCAAAATCTCAA
CAGTAAAGCTCAAAGAGACAATAATATATGCCACGATGGCCAATCCGGGAATAAACTCGA
CCGGAATCACCTCACAAAGTCATACATATGAGCATACCCGCTCTTGTCGGAGTACCACTC
AAATAATCTCAGCCATAAACAAATACAAAAATCCATATATGGCATACATAAACCGCCAAG
ACCATGGCAACATAGCTCACTCTCGCATGAGTGGCTCTCTGGACAAATGCATATCCAAAA
ACCTGTGTACACCTATGAATTTGCTGGTTGCTGCAGAAAATACTCCGTGTGTGTGAGATA
TACCAAA
■■Homology search results ■■ -
sp_hit_id A8FWK2
Definition sp|A8FWK2|CDD_SHESH Cytidine deaminase OS=Shewanella sediminis (strain HAW-EB3)
Align length 32
Score (bit) 32.0
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920744|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_A01.
         (427 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A8FWK2|CDD_SHESH Cytidine deaminase OS=Shewanella sediminis (...    32   1.1  
sp|A5EX85|EFG_DICNV Elongation factor G OS=Dichelobacter nodosus...    31   1.8  
sp|P34576|MUA3_CAEEL Transmembrane cell adhesion receptor mua-3 ...    31   2.4  
sp|P78536|ADA17_HUMAN ADAM 17 OS=Homo sapiens GN=ADAM17 PE=1 SV=1      31   2.4  
sp|Q664R6|EFG_YERPS Elongation factor G OS=Yersinia pseudotuberc...    30   3.0  
sp|A4TGY6|EFG_YERPP Elongation factor G OS=Yersinia pestis (stra...    30   3.0  
sp|Q1CCT8|EFG_YERPN Elongation factor G OS=Yersinia pestis bv. A...    30   3.0  
sp|Q8ZJB3|EFG_YERPE Elongation factor G OS=Yersinia pestis GN=fu...    30   3.0  
sp|Q1C2U0|EFG_YERPA Elongation factor G OS=Yersinia pestis bv. A...    30   3.0  
sp|A7FNN9|EFG_YERP3 Elongation factor G OS=Yersinia pseudotuberc...    30   3.0  
sp|Q5UPV9|YL275_MIMIV Putative BTB/POZ domain-containing protein...    30   3.1  
sp|Q65RG8|CDD_MANSM Cytidine deaminase OS=Mannheimia succinicipr...    30   3.1  
sp|A3N1Z1|CDD_ACTP2 Cytidine deaminase OS=Actinobacillus pleurop...    30   3.1  
sp|Q0AUH3|RPOC_SYNWW DNA-directed RNA polymerase subunit beta' O...    30   4.0  
sp|Q2IBD0|ST7_RAT Suppressor of tumorigenicity protein 7 OS=Ratt...    30   4.1  
sp|Q99M96|ST7_MOUSE Suppressor of tumorigenicity protein 7 OS=Mu...    30   4.1  
sp|Q083S7|CDD_SHEFN Cytidine deaminase OS=Shewanella frigidimari...    30   4.1  
sp|A6VLF5|CDD_ACTSZ Cytidine deaminase OS=Actinobacillus succino...    30   4.1  
sp|Q9Z1K9|ADA17_RAT ADAM 17 OS=Rattus norvegicus GN=Adam17 PE=2 ...    30   4.1  
sp|Q49UU9|GUAA_STAS1 GMP synthase [glutamine-hydrolyzing] OS=Sta...    30   5.2  
sp|Q4L386|GUAA_STAHJ GMP synthase [glutamine-hydrolyzing] OS=Sta...    30   5.2  
sp|Q8CMQ8|GUAA_STAES GMP synthase [glutamine-hydrolyzing] OS=Sta...    30   5.2  
sp|Q5HRX1|GUAA_STAEQ GMP synthase [glutamine-hydrolyzing] OS=Sta...    30   5.2  
sp|Q74LF7|GUAA_LACJO GMP synthase [glutamine-hydrolyzing] OS=Lac...    30   5.2  
sp|Q89R17|CAPP_BRAJA Phosphoenolpyruvate carboxylase OS=Bradyrhi...    30   5.2  
sp|O43609|SPY1_HUMAN Protein sprouty homolog 1 OS=Homo sapiens G...    30   5.3  
sp|Q99572|P2RX7_HUMAN P2X purinoceptor 7 OS=Homo sapiens GN=P2RX...    30   5.3  
sp|Q9Z0F8|ADA17_MOUSE ADAM 17 OS=Mus musculus GN=Adam17 PE=1 SV=2      30   5.3  
sp|P75220|RSMG_MYCPN Ribosomal RNA small subunit methyltransfera...    29   6.8  
sp|Q5FMD6|GUAA_LACAC GMP synthase [glutamine-hydrolyzing] OS=Lac...    29   6.8  

>sp|A8FWK2|CDD_SHESH Cytidine deaminase OS=Shewanella sediminis
           (strain HAW-EB3) GN=cdd PE=3 SV=1
          Length = 296

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 308 QHSSLSHEWLSGQMHIQKPVYTYEFAGCCRKY 403
           + S++SH WLSG+  I+  +  +   G CR++
Sbjct: 103 EQSAISHAWLSGERQIEDVIVNFSPCGHCRQF 134


>sp|A5EX85|EFG_DICNV Elongation factor G OS=Dichelobacter nodosus
           (strain VCS1703A) GN=fusA PE=3 SV=1
          Length = 699

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 258 NKYKNPYMAYINRQDHGNIAHSRMSGSLDKCISKNLCTPMNLLVAAENT 404
           NKYK P +AY+N+ D       R+   +   +  N   P+ L V AE+T
Sbjct: 131 NKYKVPRIAYVNKMDRTGANFLRVVKQMHDRLKAN-AVPLQLPVGAEDT 178


>sp|P34576|MUA3_CAEEL Transmembrane cell adhesion receptor mua-3
            OS=Caenorhabditis elegans GN=mua-3 PE=1 SV=2
          Length = 3767

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 348  ICPESHSCESELCCHGLGGLCMPYMDFCICL 256
            +CP +H C S   C  LGG  M Y   C+C+
Sbjct: 2412 VCPPNHDCSSAAVCEPLGG--MKYQ--CVCI 2438


>sp|P78536|ADA17_HUMAN ADAM 17 OS=Homo sapiens GN=ADAM17 PE=1 SV=1
          Length = 824

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 351 CICPES-HSCESELCCHGLGGLCMPYMD 271
           C C E+ +SC+  +CC  L G C+PY+D
Sbjct: 591 CACNETDNSCK--VCCRDLSGRCVPYVD 616


>sp|Q664R6|EFG_YERPS Elongation factor G OS=Yersinia
           pseudotuberculosis GN=fusA PE=3 SV=1
          Length = 702

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 258 NKYKNPYMAYINRQDHGNIAHSRMSGSLDKCISKNLCTPMNLLVAAE 398
           NKYK P +A++N+ D       R+ G L   +  N   P+ L + AE
Sbjct: 131 NKYKVPRIAFVNKMDRMGANFLRVVGQLKSRLGAN-PVPLQLAIGAE 176


>sp|A4TGY6|EFG_YERPP Elongation factor G OS=Yersinia pestis (strain
           Pestoides F) GN=fusA PE=3 SV=1
          Length = 702

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 258 NKYKNPYMAYINRQDHGNIAHSRMSGSLDKCISKNLCTPMNLLVAAE 398
           NKYK P +A++N+ D       R+ G L   +  N   P+ L + AE
Sbjct: 131 NKYKVPRIAFVNKMDRMGANFLRVVGQLKSRLGAN-PVPLQLAIGAE 176


>sp|Q1CCT8|EFG_YERPN Elongation factor G OS=Yersinia pestis bv.
           Antiqua (strain Nepal516) GN=fusA PE=3 SV=1
          Length = 702

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 258 NKYKNPYMAYINRQDHGNIAHSRMSGSLDKCISKNLCTPMNLLVAAE 398
           NKYK P +A++N+ D       R+ G L   +  N   P+ L + AE
Sbjct: 131 NKYKVPRIAFVNKMDRMGANFLRVVGQLKSRLGAN-PVPLQLAIGAE 176


>sp|Q8ZJB3|EFG_YERPE Elongation factor G OS=Yersinia pestis GN=fusA
           PE=3 SV=1
          Length = 702

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 258 NKYKNPYMAYINRQDHGNIAHSRMSGSLDKCISKNLCTPMNLLVAAE 398
           NKYK P +A++N+ D       R+ G L   +  N   P+ L + AE
Sbjct: 131 NKYKVPRIAFVNKMDRMGANFLRVVGQLKSRLGAN-PVPLQLAIGAE 176


>sp|Q1C2U0|EFG_YERPA Elongation factor G OS=Yersinia pestis bv.
           Antiqua (strain Antiqua) GN=fusA PE=3 SV=1
          Length = 702

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 258 NKYKNPYMAYINRQDHGNIAHSRMSGSLDKCISKNLCTPMNLLVAAE 398
           NKYK P +A++N+ D       R+ G L   +  N   P+ L + AE
Sbjct: 131 NKYKVPRIAFVNKMDRMGANFLRVVGQLKSRLGAN-PVPLQLAIGAE 176


>sp|A7FNN9|EFG_YERP3 Elongation factor G OS=Yersinia
           pseudotuberculosis serotype O:1b (strain IP 31758)
           GN=fusA PE=3 SV=1
          Length = 702

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 258 NKYKNPYMAYINRQDHGNIAHSRMSGSLDKCISKNLCTPMNLLVAAE 398
           NKYK P +A++N+ D       R+ G L   +  N   P+ L + AE
Sbjct: 131 NKYKVPRIAFVNKMDRMGANFLRVVGQLKSRLGAN-PVPLQLAIGAE 176
tr_hit_id Q9TXW8
Definition tr|Q9TXW8|Q9TXW8_CAEEL Serpentine receptor, class t protein 56 OS=Caenorhabditis elegans
Align length 73
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920744|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_A01.
         (427 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9TXW8|Q9TXW8_CAEEL Serpentine receptor, class t protein 56 O...    35   1.4  
tr|Q9J878|Q9J878_9ABAC ORF57 odv-e66 OS=Spodoptera exigua MNPV P...    34   3.2  
tr|Q4YEP6|Q4YEP6_PLABE Putative uncharacterized protein (Fragmen...    34   3.2  
tr|A0BN21|A0BN21_PARTE Chromosome undetermined scaffold_117, who...    33   5.3  
tr|Q5CVH9|Q5CVH9_CRYPV Putative uncharacterized protein OS=Crypt...    33   5.5  
tr|A3JEQ6|A3JEQ6_9ALTE Translation elongation factor EF-G, GTPas...    33   7.0  
tr|B6HUN2|B6HUN2_PENCH Pc22g22600 protein OS=Penicillium chrysog...    33   9.4  

>tr|Q9TXW8|Q9TXW8_CAEEL Serpentine receptor, class t protein 56
           OS=Caenorhabditis elegans GN=srt-56 PE=2 SV=1
          Length = 350

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
 Frame = -1

Query: 403 VFSAATSKFIGVHRFLDMHLSREPLMRE*AMLPWSWRFM--YAIYGFLYL--------FM 254
           +  +AT+ F+G+HR L M    E L+   AM+ +   F+  YAIYG L+         +M
Sbjct: 146 ILGSATAVFLGIHRLLSMINFGESLINTNAMISFWLAFLTIYAIYGSLFFDTVLFNSDYM 205

Query: 253 AEII*VVLRQERV 215
           A ++  +  QE V
Sbjct: 206 APLLDPMTEQEGV 218


>tr|Q9J878|Q9J878_9ABAC ORF57 odv-e66 OS=Spodoptera exigua MNPV PE=4
           SV=1
          Length = 723

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 137 DNNICHDGQSGNKLDRNHLTKSYI*AYPLLSEYHSNNLSHKQIQKSIYGIHKPPRPWQHS 316
           +NN CH+    N  D ++   +         EY+   L++K  QKS+  I+KP R + H+
Sbjct: 46  NNNECHNDDDDNDNDNDYYNNNVSSHLDAFEEYYIRTLANKFSQKSV-KIYKPTRQFSHN 104


>tr|Q4YEP6|Q4YEP6_PLABE Putative uncharacterized protein (Fragment)
           OS=Plasmodium berghei GN=PB405120.00.0 PE=4 SV=1
          Length = 167

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
 Frame = +2

Query: 110 QNLNSKAQRDNNICHDGQSGNKLDRNHLTKSYI*AYPLLSEYHSN---------NLSHKQ 262
           QN+  + Q +NNI H+G   + +D N     Y    P L  Y++N         N     
Sbjct: 30  QNICERYQINNNI-HNGVKVDTIDNNLDRTEYSVHIPYLDNYNNNYSFLNYNIENYIQNN 88

Query: 263 IQKSIYGIHKPPRPWQHSSLSHEWLSGQMHIQKPVYT 373
           +Q + Y +    R   H + S+ +++ ++ I   +YT
Sbjct: 89  LQNNQYNVKDDLRELYHYANSNNFINCELEINNGLYT 125


>tr|A0BN21|A0BN21_PARTE Chromosome undetermined scaffold_117, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00030575001 PE=4 SV=1
          Length = 380

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 18/77 (23%), Positives = 35/77 (45%)
 Frame = +3

Query: 114 ISTVKLKETIIYATMANPGINSTGITSQSHTYEHTRSCRSTTQIISAINKYKNPYMAYIN 293
           + +  L +  I AT  N       +  ++  Y H +  +    + + +N+Y +P+   IN
Sbjct: 205 LESALLSKDQIEATFINQIEFIKALKQKAARYAHKQKGKGNENVNTLMNQYLSPFQKLIN 264

Query: 294 RQDHGNIAHSRMSGSLD 344
             D GN  ++ +S  LD
Sbjct: 265 NFDIGNNVYNEISNGLD 281


>tr|Q5CVH9|Q5CVH9_CRYPV Putative uncharacterized protein
           OS=Cryptosporidium parvum Iowa II GN=cgd8_3990 PE=4 SV=1
          Length = 152

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 14/98 (14%)
 Frame = +2

Query: 77  TKFRQSPL*LEQNLNSKA-----QRDNNICHDGQSGNKLDRNHLTKSYI*AYPLLSEYHS 241
           T  +Q  L  E N NS +      + +N  HD + GN   R+H +  +       S +H+
Sbjct: 57  THVKQEVLQSEVNKNSSSISQEKNKSSNEIHDLEEGNSTHRSHHSSHH-------SSHHN 109

Query: 242 NNLSHKQIQKSIYGIHK---------PPRPWQHSSLSH 328
            + SH Q   S +  H+         P     HSS SH
Sbjct: 110 THRSHTQSHSSTHRSHQSGSSNDHHGPKSSKSHSSSSH 147


>tr|A3JEQ6|A3JEQ6_9ALTE Translation elongation factor EF-G, GTPase
           OS=Marinobacter sp. ELB17 GN=MELB17_20221 PE=4 SV=1
          Length = 701

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 258 NKYKNPYMAYINRQDHGNIAHSRMSGSLDKCISKNLCTPMNLLVAAE 398
           NKY+ P M ++N+ D       R+ G ++K +    C P+ L + AE
Sbjct: 131 NKYEVPRMVFVNKMDRAGANFLRVVGQIEKRLGAK-CIPVQLPIGAE 176


>tr|B6HUN2|B6HUN2_PENCH Pc22g22600 protein OS=Penicillium
           chrysogenum Wisconsin 54-1255 GN=Pc22g22600 PE=4 SV=1
          Length = 335

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
 Frame = +2

Query: 248 LSHKQIQKSIY--GIHKPPRPWQHSSLSHEWLSGQM---HIQKPVYTYEFAGCCR 397
           +++++ QK+I    ++KP RP+    +SHEW +  M   +I  P+Y+  FAG  R
Sbjct: 91  INNQRGQKAISEDSLNKPWRPFPRGRISHEWGTRVMLISYIFAPIYSLAFAGGVR 145