BP920752
Clone id YMU001_000141_A10
Library
Length 506
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000141_A10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AGAGATAATTGCAATGGTATTTGTGTATTGGGGCTACGTATGGGGAATGGAAAGCTGTCA
ATGTGGGCTGCTTGTGTGTTGACAGAAAAAGCTGTGCAAACAGATGGCAACAAGCAAATC
AGACCCTTGGATGATGTAATCAAAGGTGGTCTTGTCGCAATTTCTCCCTTCAAAAAAAGA
CAGAATGTGATGGCATATGTTGATTGGCTTAATAGCACGGCGACTAATGGGTAAGGAAAG
CTACCCACGGGTGTGTGGGTTGTTGCGAAGAATTGCGCTTCGATAGTCCGAAGCAATGCA
AAGGCTCCTATTTGGCAGTGAAGATCGACAACTCAATAATCAAAAGCCTCTCGAATATTA
GGTCTAGGATTTTAGAAAAGGGGGAGAGCACTACTGGGATGCATTGGTATGGGACCCCTA
AAGGAATAGGTGTACACATTGACATAATGGCCTTGGCTGTGCCAAGTGTATCTAGACGTA
TTGCTTACATATCGTGGTGACGAATC
■■Homology search results ■■ -
sp_hit_id Q13183
Definition sp|Q13183|S13A2_HUMAN Solute carrier family 13 member 2 OS=Homo sapiens
Align length 72
Score (bit) 30.8
E-value 3.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920752|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_A10.
(506 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q13183|S13A2_HUMAN Solute carrier family 13 member 2 OS=Homo ... 31 3.8
sp|A8I4X6|SYC_AZOC5 Cysteinyl-tRNA synthetase OS=Azorhizobium ca... 30 4.9
sp|Q5XD24|Y554_STRP6 Uncharacterized protein M6_Spy0554 OS=Strep... 30 6.5
sp|Q944B6|TYRA1_ARATH Arogenate dehydrogenase 1, chloroplastic O... 30 6.5
sp|Q5LRJ6|SYC_SILPO Cysteinyl-tRNA synthetase OS=Silicibacter po... 30 8.4

>sp|Q13183|S13A2_HUMAN Solute carrier family 13 member 2 OS=Homo
sapiens GN=SLC13A2 PE=2 SV=1
Length = 592

Score = 30.8 bits (68), Expect = 3.8
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = -1

Query: 308 GAFALLRTIE----AQFFATTHTPVGSFPYPLVAVLLSQSTYAITFCLFLKGEIATRPPL 141
G +AL + E +++ TP+ S P P +A++LS T C P+
Sbjct: 427 GGYALAKGSERSGLSEWLGNKLTPLQSVPAPAIAIILSLLVATFTECTSNVATTTIFLPI 486

Query: 140 ITSSKGLICLLP 105
+ S ICL P
Sbjct: 487 LASMAQAICLHP 498


>sp|A8I4X6|SYC_AZOC5 Cysteinyl-tRNA synthetase OS=Azorhizobium
caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
GN=cysS PE=3 SV=1
Length = 462

Score = 30.4 bits (67), Expect = 4.9
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1

Query: 106 GNKQIRPLDDVIKGGLVAISPFKKRQNVMAYVDWLNSTATNG*GKLPTGV 255
G RPLD+++ G V ++PFK+ + M +V W ST P G+
Sbjct: 155 GKLSRRPLDEMLNGARVDVAPFKR--DPMDFVLWKPSTEGQPGWPSPCGI 202


>sp|Q5XD24|Y554_STRP6 Uncharacterized protein M6_Spy0554
OS=Streptococcus pyogenes serotype M6 GN=M6_Spy0554 PE=1
SV=1
Length = 232

Score = 30.0 bits (66), Expect = 6.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1

Query: 248 VGSFPYPLVAVLLSQSTYAITFCLFLKGEIATRPPLITSSK 126
+ SF PLVA+LL+ + Y F L L + PP+ S K
Sbjct: 61 IKSFEKPLVAILLTHTHYDHIFSLDLVRDAFDHPPVYVSEK 101


>sp|Q944B6|TYRA1_ARATH Arogenate dehydrogenase 1, chloroplastic
OS=Arabidopsis thaliana GN=TYRAAT1 PE=1 SV=1
Length = 640

Score = 30.0 bits (66), Expect = 6.5
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -1

Query: 161 IATRPPLITSSKGLICLLPSVCTAFSVNTQAAHIDSFPFPIRSPNTQIPLQLS 3
+ T+PPL S L +LPS+ + + N + D+ P P + N PL+++
Sbjct: 5 LITKPPLSLSFTSLSSMLPSLSLS-TANRHLSVTDTIPLPNSNSNATPPLRIA 56


>sp|Q5LRJ6|SYC_SILPO Cysteinyl-tRNA synthetase OS=Silicibacter
pomeroyi GN=cysS PE=3 SV=1
Length = 465

Score = 29.6 bits (65), Expect = 8.4
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1

Query: 121 RPLDDVIKGGLVAISPFKKRQNVMAYVDWLNST 219
R +DD+I G V ++P+KK N M +V W ST
Sbjct: 162 RSVDDMIAGARVEVAPYKK--NPMDFVLWKPST 192


tr_hit_id Q54SW3
Definition tr|Q54SW3|Q54SW3_DICDI G-protein-coupled receptor (GPCR) family protein OS=Dictyostelium discoideum
Align length 44
Score (bit) 35.4
E-value 1.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920752|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_A10.
(506 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q54SW3|Q54SW3_DICDI G-protein-coupled receptor (GPCR) family ... 35 1.6
tr|Q86HH3|Q86HH3_DICDI Similar to Ralstonia solanacearum (Pseudo... 34 3.5
tr|Q75JT4|Q75JT4_DICDI Similar to Homo sapiens (Human). Seven tr... 34 3.5
tr|Q76EB7|Q76EB7_9PROT Formate dehydrogenase OS=Thiobacillus sp.... 34 4.6
tr|Q13PC9|Q13PC9_BURXL Putative uncharacterized protein OS=Burkh... 33 7.8
tr|A4JCM3|A4JCM3_BURVG Branched-chain amino acid transport OS=Bu... 33 7.8

>tr|Q54SW3|Q54SW3_DICDI G-protein-coupled receptor (GPCR) family
protein OS=Dictyostelium discoideum GN=grlF PE=4 SV=1
Length = 770

Score = 35.4 bits (80), Expect = 1.6
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1

Query: 212 LSQSTYAITFCLFLKGEIATRPPLITSSKGLICLLPSVCTAFSV 81
++ S Y ITFCLF+ I P +T+ +IC+ + T S+
Sbjct: 567 ITTSVYIITFCLFIVIPIMVSSPTVTTQTTIICICALITTMLSI 610


>tr|Q86HH3|Q86HH3_DICDI Similar to Ralstonia solanacearum
(Pseudomonas solanacearum). Probable lipoprotein
(G-protein-coupled receptor (GPCR) family protein)
OS=Dictyostelium discoideum GN=grlB PE=4 SV=2
Length = 755

Score = 34.3 bits (77), Expect = 3.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1

Query: 212 LSQSTYAITFCLFLKGEIATRPPLITSSKGLICLLPSVCTAFSV 81
++ S Y ITFCLF+ + P +TS IC+ V T S+
Sbjct: 580 IASSVYIITFCLFIVIPLMVSPQSVTSQVTTICVCAIVTTLISI 623


>tr|Q75JT4|Q75JT4_DICDI Similar to Homo sapiens (Human). Seven
transmembrane helix receptor (G-protein-coupled receptor
(GPCR) family protein) OS=Dictyostelium discoideum
GN=grlJ PE=4 SV=1
Length = 783

Score = 34.3 bits (77), Expect = 3.5
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1

Query: 212 LSQSTYAITFCLFLKGEIATRPPLITSSKGLICLLPSVCTAFSV 81
++ S Y ITFCLF+ + P +TS +IC+ V T S+
Sbjct: 577 ITTSVYIITFCLFIVIPLMVSPQSLTSQTTIICVCAIVTTLISM 620


>tr|Q76EB7|Q76EB7_9PROT Formate dehydrogenase OS=Thiobacillus sp.
KNK65MA GN=fdh65MA PE=3 SV=1
Length = 401

Score = 33.9 bits (76), Expect = 4.6
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Frame = +3

Query: 228 WVRKATHGCVGCCEELRFDSPKQCKGSYLAVKIDNSIIKSLSNI--------RSRILEKG 383
W RK C E +D GS A +I ++++ L+ R R+ E
Sbjct: 172 WARKGGWNIADCVEH-SYDLEGMTVGSVAAGRIGLAVLRRLAPFDVKLHYTDRHRLPEAV 230

Query: 384 ESTTGMHWYGTPKGIGVHIDIMALAVP 464
E G+ W+ T + + H D++ L VP
Sbjct: 231 EKELGLVWHDTREDMYPHCDVVTLNVP 257


>tr|Q13PC9|Q13PC9_BURXL Putative uncharacterized protein
OS=Burkholderia xenovorans (strain LB400) GN=Bxeno_B1092
PE=4 SV=1
Length = 187

Score = 33.1 bits (74), Expect = 7.8
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Frame = -1

Query: 341 DY*VVDLHCQIGAFALLRTIEAQFFATTHTPVGSFPYPLVAVLLSQSTYAITFCLFLKGE 162
DY L C IGA A+ + I F + TH G FP L A+L+ A+ F + +
Sbjct: 38 DYYGGALMCLIGAGAVTQGITYNFGSLTHMGPGFFPTCLGAILI-----ALGFAIVCTAK 92

Query: 161 -IATRPPLITSS---------KGLICLLPSV 99
ATRPP+ + +G C+L S+
Sbjct: 93 RPATRPPIGEEAGREAVRPEWRGWFCILASI 123


>tr|A4JCM3|A4JCM3_BURVG Branched-chain amino acid transport
OS=Burkholderia vietnamiensis (strain G4 / LMG 22486)
GN=Bcep1808_1015 PE=4 SV=1
Length = 112

Score = 33.1 bits (74), Expect = 7.8
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = -1

Query: 233 YPLVAVLLSQSTYAITFCLFLKGEIATRPPLITSSKGLICLLPSVCTAFSV-NTQAAHID 57
Y L+ + ++ TYAI LFL GE T PPL+ ++ G + + +V TA V T A H
Sbjct: 3 YALLILGMAAITYAIRTTLFLFGERLTFPPLVRTALGFVPV--TVLTAIIVPMTVAPHGG 60

Query: 56 SFPFPIRSP 30
+ R+P
Sbjct: 61 TAELTWRNP 69