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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920755
Clone id YMU001_000141_B04
Library
Length 595
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000141_B04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCAGGTACTCTTCACCTCNGGAGAAGACCTTCGCCTCCTCACTCTCCCCGACATCGACGA
CGATCACCACGGTCTGCTCACTCTCCAGTTCGGCGTCACTTTTCTCCCCCAGGGCATCGC
CGCCGTAGCCCACAGCGCGCTTATGACATGTCCCCTCGACGACGCCCTCGTACTTCTCCT
AGACTTGTATCCCAATCTCCAAGGCTTCAGAACAAGTCATTGTCTGCTGAAGCTTTTTCA
AAGTCGCCCTCACCGCATCGAGATTCGTCTAGCTCTCCTCACAAGCTCTCATCGATGTCT
CCTCCTCACCAATCAAATCGCTCATTATCTCCACCCCGAGGTAAGTCTTCTTTTGGCACT
GCTCCTTATCACAACTTACCTGCTCCAAAAGGAAGGCCTTTGAGGGGCTCTCTTTCTCCC
GTAAAGCAACAGAAACCCAAACATCCGCATCGTTCTTCTCGGTCTCCATCTCCGAGGCCA
CCAAAAAAGGAAGAATCCCCTCGCAGAAATAATCGTCCAGAGCCTGTGCAAAGAAGAGCC
TTATCTCCATCCTTATCTCCCCCGAGGCAACAGCTGAGGTCTTCCAGTTTGTGAG
■■Homology search results ■■ -
sp_hit_id P12575
Definition sp|P12575|FUS_SENDF Fusion glycoprotein F0 OS=Sendai virus (strain Fushimi)
Align length 118
Score (bit) 31.6
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920755|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_B04.
         (595 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P12575|FUS_SENDF Fusion glycoprotein F0 OS=Sendai virus (stra...    32   3.2  
sp|P04856|FUS_SENDH Fusion glycoprotein F0 OS=Sendai virus (stra...    31   5.4  
sp|O34374|YJIB_BACSU Putative cytochrome P450 yjiB OS=Bacillus s...    30   7.1  

>sp|P12575|FUS_SENDF Fusion glycoprotein F0 OS=Sendai virus (strain
           Fushimi) GN=F PE=1 SV=1
          Length = 565

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
 Frame = -1

Query: 448 ADVWVSVALREKESPSKAFLLEQVSCDKEQCQKKTYLGVEIMSDLIGEEETSMRACEES* 269
           A +   +AL E     +   L + S        KT+  +E++ + +GE+  +++  +   
Sbjct: 133 AQITAGIALAEAREAKRDIALIKES------MTKTHKSIELLQNAVGEQILALKTLQ--- 183

Query: 268 TNLDAVRATLKKLQQTMTC-SEALEIGIQV*EKYEGVVEGTCHKRAVGYGGDALGEKS 98
              D V   +K     + C + AL +GI++ + Y G++       A G     +GEKS
Sbjct: 184 ---DFVNDEIKPAISELGCETAALRLGIKLTQHYSGLL------TAFGSNFGTIGEKS 232


>sp|P04856|FUS_SENDH Fusion glycoprotein F0 OS=Sendai virus (strain
           Harris) GN=F PE=3 SV=1
          Length = 565

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
 Frame = -1

Query: 448 ADVWVSVALREKESPSKAFLLEQVSCDKEQCQKKTYLGVEIMSDLIGEEETSMRACEES* 269
           A +   +AL E     +   L + S        KT+  VE++ + +GE+  +++  +   
Sbjct: 133 AQITAGIALAEAREAKRDIALIKES------MTKTHKSVELLQNAVGEQILALKTLQ--- 183

Query: 268 TNLDAVRATLKKLQQTMTC-SEALEIGIQV*EKYEGVVEGTCHKRAVGYGGDALGEKS 98
              D V   +K     + C + AL +GI++ + Y G++       A G     +GEKS
Sbjct: 184 ---DFVNDEIKPAISELGCETAALRLGIKLTQHYFGLL------TAFGSNFGTIGEKS 232


>sp|O34374|YJIB_BACSU Putative cytochrome P450 yjiB OS=Bacillus
           subtilis GN=yjiB PE=3 SV=1
          Length = 396

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 16/89 (17%)
 Frame = -1

Query: 493 LPFLVASE--------METEKNDADVWVSVALREKESPSKAFLLEQVSCDKEQC------ 356
           LP +V SE        ME  K  +D+ VS    + E   KAFL E+  C++E        
Sbjct: 139 LPVIVISELLGVPSAHMEQFKAWSDLLVSTPKDKSEEAEKAFLEERDKCEEELAAFFAGI 198

Query: 355 --QKKTYLGVEIMSDLIGEEETSMRACEE 275
             +K+     +I+S L+  EET  +   E
Sbjct: 199 IEEKRNKPEQDIISILVEAEETGEKLSGE 227
tr_hit_id Q9LMM9
Definition tr|Q9LMM9|Q9LMM9_ARATH F22L4.6 protein OS=Arabidopsis thaliana
Align length 110
Score (bit) 38.1
E-value 0.39
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920755|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_B04.
         (595 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9LMM9|Q9LMM9_ARATH F22L4.6 protein OS=Arabidopsis thaliana G...    38   0.39 
tr|Q948X7|Q948X7_ARATH C-terminal binding protein OS=Arabidopsis...    38   0.39 
tr|Q93YQ6|Q93YQ6_ARATH Putative uncharacterized protein (Putativ...    38   0.39 
tr|Q7DLS3|Q7DLS3_ARATH DNA, 40 kb surrounding ACS1 locus OS=Arab...    38   0.39 
tr|O23702|O23702_ARATH Dehydrogenase OS=Arabidopsis thaliana GN=...    38   0.39 
tr|O03984|O03984_ARATH Putative dehydrogenase (Fragment) OS=Arab...    38   0.39 
tr|A7Z652|A7Z652_BACA2 RecQ OS=Bacillus amyloliquefaciens (strai...    35   3.3  
tr|B1B9Z7|B1B9Z7_CLOBO Membrane associated methyl-accepting chem...    35   4.3  
tr|B6BDC8|B6BDC8_9RHOB Methyl-accepting chemotaxis sensory trans...    33   9.4  
tr|A9TAA8|A9TAA8_PHYPA Predicted protein OS=Physcomitrella paten...    33   9.5  
tr|A2FVQ8|A2FVQ8_TRIVA Putative uncharacterized protein OS=Trich...    33   9.5  

>tr|Q9LMM9|Q9LMM9_ARATH F22L4.6 protein OS=Arabidopsis thaliana
           GN=F22L4.6 PE=4 SV=1
          Length = 1284

 Score = 38.1 bits (87), Expect = 0.39
 Identities = 31/110 (28%), Positives = 51/110 (46%)
 Frame = -1

Query: 577 SAVASGEIRMEIRLFFAQALDDYFCEGILPFLVASEMETEKNDADVWVSVALREKESPSK 398
           SA  S E+ MEIR      L  +F +G++P    S+ E E+++A      +  E++SPSK
Sbjct: 638 SADYSEEVWMEIREKAISILHSFFLDGVIPSNTVSDEEVEESEA------SEEEEQSPSK 691

Query: 397 AFLLEQVSCDKEQCQKKTYLGVEIMSDLIGEEETSMRACEES*TNLDAVR 248
              L  V     Q  + T    EI+     E + S+   ++  +   AV+
Sbjct: 692 HEKLAIVESTSRQQGESTLTSTEIVRREASELKESLSPGQQHVSQNTAVK 741


>tr|Q948X7|Q948X7_ARATH C-terminal binding protein OS=Arabidopsis
           thaliana GN=ANGUSTIFOLIA PE=2 SV=1
          Length = 636

 Score = 38.1 bits (87), Expect = 0.39
 Identities = 31/110 (28%), Positives = 51/110 (46%)
 Frame = -1

Query: 577 SAVASGEIRMEIRLFFAQALDDYFCEGILPFLVASEMETEKNDADVWVSVALREKESPSK 398
           SA  S E+ MEIR      L  +F +G++P    S+ E E+++A      +  E++SPSK
Sbjct: 308 SADYSEEVWMEIREKAISILHSFFLDGVIPSNTVSDEEVEESEA------SEEEEQSPSK 361

Query: 397 AFLLEQVSCDKEQCQKKTYLGVEIMSDLIGEEETSMRACEES*TNLDAVR 248
              L  V     Q  + T    EI+     E + S+   ++  +   AV+
Sbjct: 362 HEKLAIVESTSRQQGESTLTSTEIVRREASELKESLSPGQQHVSQNTAVK 411


>tr|Q93YQ6|Q93YQ6_ARATH Putative uncharacterized protein (Putative
           uncharacterized protein At1g01510) OS=Arabidopsis
           thaliana GN=At1g01510 PE=2 SV=1
          Length = 636

 Score = 38.1 bits (87), Expect = 0.39
 Identities = 31/110 (28%), Positives = 51/110 (46%)
 Frame = -1

Query: 577 SAVASGEIRMEIRLFFAQALDDYFCEGILPFLVASEMETEKNDADVWVSVALREKESPSK 398
           SA  S E+ MEIR      L  +F +G++P    S+ E E+++A      +  E++SPSK
Sbjct: 308 SADYSEEVWMEIREKAISILHSFFLDGVIPSNTVSDEEVEESEA------SEEEEQSPSK 361

Query: 397 AFLLEQVSCDKEQCQKKTYLGVEIMSDLIGEEETSMRACEES*TNLDAVR 248
              L  V     Q  + T    EI+     E + S+   ++  +   AV+
Sbjct: 362 HEKLAIVESTSRQQGESTLTSTEIVRREASELKESLSPGQQHVSQNTAVK 411


>tr|Q7DLS3|Q7DLS3_ARATH DNA, 40 kb surrounding ACS1 locus
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 627

 Score = 38.1 bits (87), Expect = 0.39
 Identities = 31/110 (28%), Positives = 51/110 (46%)
 Frame = -1

Query: 577 SAVASGEIRMEIRLFFAQALDDYFCEGILPFLVASEMETEKNDADVWVSVALREKESPSK 398
           SA  S E+ MEIR      L  +F +G++P    S+ E E+++A      +  E++SPSK
Sbjct: 299 SADYSEEVWMEIREKAISILHSFFLDGVIPSNTVSDEEVEESEA------SEEEEQSPSK 352

Query: 397 AFLLEQVSCDKEQCQKKTYLGVEIMSDLIGEEETSMRACEES*TNLDAVR 248
              L  V     Q  + T    EI+     E + S+   ++  +   AV+
Sbjct: 353 HEKLAIVESTSRQQGESTLTSTEIVRREASELKESLSPGQQHVSQNTAVK 402


>tr|O23702|O23702_ARATH Dehydrogenase OS=Arabidopsis thaliana
           GN=At1g01510 PE=4 SV=1
          Length = 636

 Score = 38.1 bits (87), Expect = 0.39
 Identities = 31/110 (28%), Positives = 51/110 (46%)
 Frame = -1

Query: 577 SAVASGEIRMEIRLFFAQALDDYFCEGILPFLVASEMETEKNDADVWVSVALREKESPSK 398
           SA  S E+ MEIR      L  +F +G++P    S+ E E+++A      +  E++SPSK
Sbjct: 308 SADYSEEVWMEIREKAISILHSFFLDGVIPSNTVSDEEVEESEA------SEEEEQSPSK 361

Query: 397 AFLLEQVSCDKEQCQKKTYLGVEIMSDLIGEEETSMRACEES*TNLDAVR 248
              L  V     Q  + T    EI+     E + S+   ++  +   AV+
Sbjct: 362 HEKLAIVESTSRQQGESTLTSTEIVRREASELKESLSPGQQHVSQNTAVK 411


>tr|O03984|O03984_ARATH Putative dehydrogenase (Fragment)
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 641

 Score = 38.1 bits (87), Expect = 0.39
 Identities = 31/110 (28%), Positives = 51/110 (46%)
 Frame = -1

Query: 577 SAVASGEIRMEIRLFFAQALDDYFCEGILPFLVASEMETEKNDADVWVSVALREKESPSK 398
           SA  S E+ MEIR      L  +F +G++P    S+ E E+++A      +  E++SPSK
Sbjct: 313 SADYSEEVWMEIREKAISILHSFFLDGVIPSNTVSDEEVEESEA------SEEEEQSPSK 366

Query: 397 AFLLEQVSCDKEQCQKKTYLGVEIMSDLIGEEETSMRACEES*TNLDAVR 248
              L  V     Q  + T    EI+     E + S+   ++  +   AV+
Sbjct: 367 HEKLAIVESTSRQQGESTLTSTEIVRREASELKESLSPGQQHVSQNTAVK 416


>tr|A7Z652|A7Z652_BACA2 RecQ OS=Bacillus amyloliquefaciens (strain
           FZB42) GN=recQ PE=4 SV=1
          Length = 496

 Score = 35.0 bits (79), Expect = 3.3
 Identities = 21/80 (26%), Positives = 40/80 (50%)
 Frame = -1

Query: 568 ASGEIRMEIRLFFAQALDDYFCEGILPFLVASEMETEKNDADVWVSVALREKESPSKAFL 389
           A G+  ++ ++   ++L DY  EGIL  +  +    E+   DV ++  ++E ++ +   L
Sbjct: 334 APGDTELQQQIIQTESLSDYDLEGILAIIRDAGTGDERKLRDVLINKGVQETQARTAVHL 393

Query: 388 LEQVSCDKEQCQKKTYLGVE 329
             Q    KEQ Q++    VE
Sbjct: 394 YLQGKTTKEQLQEELTYRVE 413


>tr|B1B9Z7|B1B9Z7_CLOBO Membrane associated methyl-accepting
           chemotaxis protein OS=Clostridium botulinum C str.
           Eklund GN=CBC_0277 PE=4 SV=1
          Length = 573

 Score = 34.7 bits (78), Expect = 4.3
 Identities = 30/129 (23%), Positives = 62/129 (48%)
 Frame = -1

Query: 418 EKESPSKAFLLEQVSCDKEQCQKKTYLGVEIMSDLIGEEETSMRACEES*TNLDAVRATL 239
           + +S + + + E +S   ++   K     E+ +++  E + S ++ EE  ++++ +  T+
Sbjct: 270 KNDSNNMSDMSENLSSTVQEITAKISEVDELTNNINNEIQDSSKSSEELSSSIEEINTTV 329

Query: 238 KKLQQTMTCSEALEIGIQV*EKYEGVVEGTCHKRAVGYGGDALGEKSDAELESEQTVVIV 59
           ++L       EA E  +   E+   V +    K AVGY      EK D+ L++ Q   +V
Sbjct: 330 EELSNKSV--EASENALNAKERSIKVQQNV--KNAVGYTRKVYKEKEDSILKAIQEGKVV 385

Query: 58  VDVGESEEA 32
            +VG   +A
Sbjct: 386 EEVGVMADA 394


>tr|B6BDC8|B6BDC8_9RHOB Methyl-accepting chemotaxis sensory
           transducer OS=Rhodobacterales bacterium Y4I
           GN=RBY4I_2014 PE=4 SV=1
          Length = 722

 Score = 33.5 bits (75), Expect = 9.4
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
 Frame = -3

Query: 257 CGEGDFEKASA---DNDLF*SLGDWDTSLGEVRGRRRGDM-----S*ARCGLRRRCPGGE 102
           CGEGDF +  A   D     SLG    ++GEV G+  GD+     + A   L RR P G+
Sbjct: 370 CGEGDFSRRIADTGDGGQDGSLGRGVNAIGEVAGKGLGDVLKVLDALAEGDLTRRMPTGQ 429

Query: 101 K 99
           K
Sbjct: 430 K 430


>tr|A9TAA8|A9TAA8_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_168894 PE=4 SV=1
          Length = 1849

 Score = 33.5 bits (75), Expect = 9.5
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = -1

Query: 412  ESPSKAFLLEQVSCDKEQCQ-----KKTYLGVEIMSDLIGEEETSMRACEES*TNLDAVR 248
            E PS   LLE +S D + C+      K   G  + S L+ ++ET  +AC     N+  +R
Sbjct: 1405 EEPSYPLLLEDLSSDVQDCRDVGIISKENSGSSLTSRLVSKQETESKACR----NIPPIR 1460

Query: 247  ATL 239
            + L
Sbjct: 1461 SAL 1463