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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920757
Clone id YMU001_000141_B06
Library
Length 341
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000141_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGCCATTGCTTCTCCAGCTTCTCAGCTTTCCTCCTCTGCGCCATTTCCTCCCCTTGCTTT
TCCACCATCGCCTTCACCACCTCCGCCAGGCTCTTGATGGCATCTGTAGCCACTCTGTCA
GGTAAACAGGCCAGTGCTCTCTGCCATTCCTCACATAACCTGTATCCAGGCGGCTCGATT
CGTTATTGTATCGATGCATTGCGTAGAACAGCAATCACTCGTGTGGGTGCTCACCTGTAA
GTCTCCTGCAGATCGTGCTCTTATCCATGATCTTCATCATCATCGCAGCCAGCTTCAGTT
GAATACTTATCCTGGGCTTTGCCTGTGGGAATGGGGATGCA
■■Homology search results ■■ -
sp_hit_id Q4ULU3
Definition sp|Q4ULU3|COX2_RICFE Probable cytochrome c oxidase subunit 2 OS=Rickettsia felis
Align length 44
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920757|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_B06.
         (341 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4ULU3|COX2_RICFE Probable cytochrome c oxidase subunit 2 OS=...    31   2.2  
sp|Q92I65|COX2_RICCN Probable cytochrome c oxidase subunit 2 OS=...    31   2.2  
sp|Q5UR26|YR546_MIMIV Uncharacterized protein R546 OS=Acanthamoe...    30   4.9  
sp|Q6BVB2|ALG11_DEBHA Alpha-1,2-mannosyltransferase ALG11 OS=Deb...    30   4.9  
sp|P26646|YHDH_ECOLI Putative quinone oxidoreductase yhdH OS=Esc...    29   8.3  
sp|Q02C58|TRMFO_SOLUE Methylenetetrahydrofolate--tRNA-(uracil-5-...    29   8.3  
sp|P0A0Z8|NEUA_NEIME N-acylneuraminate cytidylyltransferase OS=N...    29   8.3  
sp|P0A0Z7|NEUA_NEIMB N-acylneuraminate cytidylyltransferase OS=N...    29   8.3  

>sp|Q4ULU3|COX2_RICFE Probable cytochrome c oxidase subunit 2
           OS=Rickettsia felis GN=ctaC PE=3 SV=1
          Length = 315

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 179 FVIVSMHCVEQQSLVWVLTCKSPADRALIHDLHH-HRSQLQLNT 307
           F+IVS +C   + L W +T + PA   ++ +LHH H   L ++T
Sbjct: 59  FLIVSSNCFASEPLPWQVTFQPPAS-PIMEELHHFHNFLLYIST 101


>sp|Q92I65|COX2_RICCN Probable cytochrome c oxidase subunit 2
           OS=Rickettsia conorii GN=ctaC PE=3 SV=1
          Length = 315

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 179 FVIVSMHCVEQQSLVWVLTCKSPADRALIHDLHH-HRSQLQLNT 307
           F+IVS +C   + L W +T + PA   ++ +LHH H   L ++T
Sbjct: 59  FLIVSCNCFASEPLPWQVTFQPPAS-PIMEELHHFHNFLLYIST 101


>sp|Q5UR26|YR546_MIMIV Uncharacterized protein R546 OS=Acanthamoeba
           polyphaga mimivirus GN=MIMI_R546 PE=4 SV=1
          Length = 213

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 119 DRVATDAIKSLAEVVKAMVEKQGEEMAQRRKAEKLEKQ 6
           DR   D +K   E+V  ++EK+ EE    +KAEK E++
Sbjct: 105 DRFVKD-VKKQREIVNDLIEKEKEEEKAAKKAEKAEEK 141


>sp|Q6BVB2|ALG11_DEBHA Alpha-1,2-mannosyltransferase ALG11
           OS=Debaryomyces hansenii GN=ALG11 PE=3 SV=2
          Length = 616

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 215 SLVWVLTCKSPADRALIHDLHHHRSQLQLNTY 310
           +LV++ +C++P D   +HDL      L+LN Y
Sbjct: 399 TLVFLGSCRTPDDTKTLHDLKQEVDDLELNGY 430


>sp|P26646|YHDH_ECOLI Putative quinone oxidoreductase yhdH
           OS=Escherichia coli (strain K12) GN=yhdH PE=1 SV=1
          Length = 324

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -1

Query: 227 PTRVIA-VLRNASIQ*--RIEPPGYRLCEEWQRALACLPDRVATDAIKSLA 84
           PT V+  +LRN  +Q    +  P  R  + WQR +A LP+   T A K ++
Sbjct: 249 PTTVMPFILRNVRLQGVDSVMTPPERRAQAWQRLVADLPESFYTQAAKEIS 299


>sp|Q02C58|TRMFO_SOLUE
           Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase trmFO OS=Solibacter usitatus (strain
           Ellin6076) GN=trmFO PE=3 SV=1
          Length = 445

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 102 ICSHSVR*TGQCSLPFLT*PVSRRLDSLLYRC 197
           +CS+S++   + + P+L     RRLDSLL +C
Sbjct: 51  VCSNSLKSESESTAPWLLKEELRRLDSLLLQC 82


>sp|P0A0Z8|NEUA_NEIME N-acylneuraminate cytidylyltransferase
           OS=Neisseria meningitidis GN=neuA PE=1 SV=1
          Length = 228

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
 Frame = +1

Query: 40  AISSPCFSTIAFTTSARLLMASV-----------ATLSGKQASALCHSSHNLYPGGSIRY 186
           AISS CF  I  +T   L+               A L+   AS++    H L   GS   
Sbjct: 39  AISSKCFDRIIVSTDGGLIAEEAKNFGVEVVLRPAELASDTASSISGVIHALETIGSNSG 98

Query: 187 CIDALRRTAITRVGAHL 237
            +  L+ T+  R GAH+
Sbjct: 99  TVTLLQPTSPLRTGAHI 115


>sp|P0A0Z7|NEUA_NEIMB N-acylneuraminate cytidylyltransferase
           OS=Neisseria meningitidis serogroup B GN=neuA PE=1 SV=1
          Length = 228

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
 Frame = +1

Query: 40  AISSPCFSTIAFTTSARLLMASV-----------ATLSGKQASALCHSSHNLYPGGSIRY 186
           AISS CF  I  +T   L+               A L+   AS++    H L   GS   
Sbjct: 39  AISSKCFDRIIVSTDGGLIAEEAKNFGVEVVLRPAELASDTASSISGVIHALETIGSNSG 98

Query: 187 CIDALRRTAITRVGAHL 237
            +  L+ T+  R GAH+
Sbjct: 99  TVTLLQPTSPLRTGAHI 115
tr_hit_id Q69JE3
Definition tr|Q69JE3|Q69JE3_ORYSJ Putative uncharacterized protein P0229B10.33 (Putative uncharacterized protein B1274F11.2) OS=Oryza sativa subsp. japonica
Align length 53
Score (bit) 55.5
E-value 1.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920757|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_B06.
         (341 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q69JE3|Q69JE3_ORYSJ Putative uncharacterized protein P0229B10...    55   1e-06
tr|Q0J002|Q0J002_ORYSJ Os09g0538700 protein OS=Oryza sativa subs...    55   1e-06
tr|B8BDX6|B8BDX6_ORYSI Putative uncharacterized protein OS=Oryza...    55   1e-06
tr|A3C115|A3C115_ORYSJ Putative uncharacterized protein OS=Oryza...    55   1e-06
tr|B8A2W2|B8A2W2_MAIZE Putative uncharacterized protein OS=Zea m...    54   3e-06
tr|A7Q1C2|A7Q1C2_VITVI Chromosome chr10 scaffold_43, whole genom...    54   4e-06
tr|A7QDU5|A7QDU5_VITVI Chromosome chr4 scaffold_83, whole genome...    53   7e-06
tr|A5AK20|A5AK20_VITVI Putative uncharacterized protein OS=Vitis...    53   7e-06
tr|Q56W45|Q56W45_ARATH BZIP-like protein OS=Arabidopsis thaliana...    52   1e-05
tr|B7ZXF8|B7ZXF8_MAIZE Putative uncharacterized protein OS=Zea m...    52   1e-05
tr|Q8H241|Q8H241_GOSHI Putative uncharacterized protein OS=Gossy...    52   1e-05
tr|A9S735|A9S735_PHYPA Predicted protein OS=Physcomitrella paten...    49   1e-04
tr|Q9SD19|Q9SD19_ARATH Putative uncharacterized protein F24M12.3...    49   2e-04
tr|A4ZGT9|A4ZGT9_SOYBN Transcription factor bZIP22 (Fragment) OS...    49   2e-04
tr|Q9AQW1|Q9AQW1_ORYSA Putative leucine zipper protein (BZIP pro...    48   2e-04
tr|Q7XC46|Q7XC46_ORYSJ Os10g0562700 protein OS=Oryza sativa subs...    48   2e-04
tr|A2ZA98|A2ZA98_ORYSI Putative uncharacterized protein OS=Oryza...    48   2e-04
tr|Q9LY33|Q9LY33_ARATH BZIP protein OS=Arabidopsis thaliana GN=F...    47   6e-04
tr|Q93YU8|Q93YU8_ARATH Putative bZIP protein OS=Arabidopsis thal...    47   6e-04
tr|Q0JLN8|Q0JLN8_ORYSJ cDNA clone:J013001B11, full insert sequen...    47   6e-04
tr|A9RKX2|A9RKX2_PHYPA Predicted protein OS=Physcomitrella paten...    47   6e-04
tr|A2ZUT8|A2ZUT8_ORYSJ Putative uncharacterized protein OS=Oryza...    47   6e-04
tr|A2WRW1|A2WRW1_ORYSI Putative uncharacterized protein OS=Oryza...    47   6e-04
tr|A7P8E4|A7P8E4_VITVI Chromosome chr3 scaffold_8, whole genome ...    46   8e-04
tr|A7PKB0|A7PKB0_VITVI Chromosome chr15 scaffold_19, whole genom...    46   0.001
tr|A5BR55|A5BR55_VITVI Putative uncharacterized protein OS=Vitis...    46   0.001
tr|Q0GPH0|Q0GPH0_SOYBN BZIP transcription factor bZIP80 (Fragmen...    45   0.001
tr|Q0GPD5|Q0GPD5_SOYBN BZIP transcription factor bZIP79 (Fragmen...    45   0.001
tr|A2Q362|A2Q362_MEDTR Putative uncharacterized protein OS=Medic...    45   0.001
tr|A9S7Q5|A9S7Q5_PHYPA Predicted protein (Fragment) OS=Physcomit...    45   0.002

>tr|Q69JE3|Q69JE3_ORYSJ Putative uncharacterized protein P0229B10.33
           (Putative uncharacterized protein B1274F11.2) OS=Oryza
           sativa subsp. japonica GN=P0229B10.33 PE=4 SV=1
          Length = 242

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 24/53 (45%), Positives = 38/53 (71%)
 Frame = -1

Query: 164 YRLCEEWQRALACLPDRVATDAIKSLAEVVKAMVEKQGEEMAQRRKAEKLEKQ 6
           Y LCEEWQ A+  +PD+VA++ IK+L  V+ A+V +Q EE  Q++++E   K+
Sbjct: 79  YSLCEEWQLAIDRIPDKVASEGIKTLLTVIHAVVVQQAEEQKQKKRSESAFKE 131


>tr|Q0J002|Q0J002_ORYSJ Os09g0538700 protein OS=Oryza sativa subsp.
           japonica GN=Os09g0538700 PE=4 SV=1
          Length = 727

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 24/53 (45%), Positives = 38/53 (71%)
 Frame = -1

Query: 164 YRLCEEWQRALACLPDRVATDAIKSLAEVVKAMVEKQGEEMAQRRKAEKLEKQ 6
           Y LCEEWQ A+  +PD+VA++ IK+L  V+ A+V +Q EE  Q++++E   K+
Sbjct: 564 YSLCEEWQLAIDRIPDKVASEGIKTLLTVIHAVVVQQAEEQKQKKRSESAFKE 616


>tr|B8BDX6|B8BDX6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_32200 PE=4 SV=1
          Length = 670

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 24/53 (45%), Positives = 38/53 (71%)
 Frame = -1

Query: 164 YRLCEEWQRALACLPDRVATDAIKSLAEVVKAMVEKQGEEMAQRRKAEKLEKQ 6
           Y LCEEWQ A+  +PD+VA++ IK+L  V+ A+V +Q EE  Q++++E   K+
Sbjct: 507 YSLCEEWQLAIDRIPDKVASEGIKTLLTVIHAVVVQQAEEQKQKKRSESAFKE 559


>tr|A3C115|A3C115_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_028987 PE=4 SV=1
          Length = 588

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 24/53 (45%), Positives = 38/53 (71%)
 Frame = -1

Query: 164 YRLCEEWQRALACLPDRVATDAIKSLAEVVKAMVEKQGEEMAQRRKAEKLEKQ 6
           Y LCEEWQ A+  +PD+VA++ IK+L  V+ A+V +Q EE  Q++++E   K+
Sbjct: 425 YSLCEEWQLAIDRIPDKVASEGIKTLLTVIHAVVVQQAEEQKQKKRSESAFKE 477


>tr|B8A2W2|B8A2W2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 573

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 24/54 (44%), Positives = 39/54 (72%)
 Frame = -1

Query: 164 YRLCEEWQRALACLPDRVATDAIKSLAEVVKAMVEKQGEEMAQRRKAEKLEKQW 3
           Y LCEEWQ A+  +PD+VA++ IK+L  V+ A+V +Q EE  Q++++E   K++
Sbjct: 416 YGLCEEWQLAIDRIPDKVASEGIKTLLTVIHAVVIQQAEEHKQKKRSESAFKEF 469


>tr|A7Q1C2|A7Q1C2_VITVI Chromosome chr10 scaffold_43, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028394001
           PE=4 SV=1
          Length = 632

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 29/67 (43%), Positives = 42/67 (62%)
 Frame = -1

Query: 206 LRNASIQ*RIEPPGYRLCEEWQRALACLPDRVATDAIKSLAEVVKAMVEKQGEEMAQRRK 27
           L + S Q    P    LCEEWQ AL   PD+VA++AIK+L   + ++V +Q EE    +K
Sbjct: 462 LASDSQQSHCAPVVRTLCEEWQLALDRFPDKVASEAIKNLLSAIHSIVLQQAEECNLLKK 521

Query: 26  AEKLEKQ 6
           +EKLE++
Sbjct: 522 SEKLERR 528


>tr|A7QDU5|A7QDU5_VITVI Chromosome chr4 scaffold_83, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036746001
           PE=4 SV=1
          Length = 607

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 24/52 (46%), Positives = 36/52 (69%)
 Frame = -1

Query: 164 YRLCEEWQRALACLPDRVATDAIKSLAEVVKAMVEKQGEEMAQRRKAEKLEK 9
           Y LCEEW  AL  +PD+VA++ IKSL  V+ A+V +Q +E  Q++++E   K
Sbjct: 443 YSLCEEWHLALDRVPDKVASEGIKSLLTVIHAIVVQQADEQKQKKRSESAFK 494


>tr|A5AK20|A5AK20_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_009207 PE=4 SV=1
          Length = 627

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 24/52 (46%), Positives = 36/52 (69%)
 Frame = -1

Query: 164 YRLCEEWQRALACLPDRVATDAIKSLAEVVKAMVEKQGEEMAQRRKAEKLEK 9
           Y LCEEW  AL  +PD+VA++ IKSL  V+ A+V +Q +E  Q++++E   K
Sbjct: 463 YSLCEEWHLALDRVPDKVASEGIKSLLTVIHAIVVQQADEQKQKKRSESAFK 514


>tr|Q56W45|Q56W45_ARATH BZIP-like protein OS=Arabidopsis thaliana
           GN=At1g02110 PE=2 SV=1
          Length = 703

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 23/56 (41%), Positives = 36/56 (64%)
 Frame = -1

Query: 173 PPGYRLCEEWQRALACLPDRVATDAIKSLAEVVKAMVEKQGEEMAQRRKAEKLEKQ 6
           P  + LCEEW+++L  +PD VA++AIKS   VV  +  KQ EE+  +++ E   K+
Sbjct: 542 PDSFALCEEWKQSLERVPDTVASEAIKSFVNVVHVISIKQAEEVKMKKRTESAGKE 597


>tr|B7ZXF8|B7ZXF8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 659

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 24/50 (48%), Positives = 34/50 (68%)
 Frame = -1

Query: 155 CEEWQRALACLPDRVATDAIKSLAEVVKAMVEKQGEEMAQRRKAEKLEKQ 6
           C+EW++AL  LPD VA++AIKS   VV  +  KQ EEM  +++AE   K+
Sbjct: 495 CDEWKQALDRLPDAVASEAIKSFVNVVHVIYAKQAEEMKVKKRAEAYSKE 544