BP920758 |
Clone id |
YMU001_000141_B07 |
Library |
YMU01 |
Length |
520 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000141_B07. |
Accession |
BP920758 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL755Contig1 |
Sequence |
AATGACACCAACTCCCATGTGTCATTTGCTCCTAATGCAGCCATCTCTTCATTCATTGCA TCATCCCAATGCACATTTCCAACTGCATCCTCAAAACACGTGGGCTCCACATCCTGTATC ACCTTAGCCATGTAGGCTCGGTGATGCGCTAGATACCCATCTTAAGTCAATTTCTGAACT GGATTTCTGACTCTATTAGATCTGCGCGGTCCCGGGTCACTCCTTTGCCCTCTAGCATCT TCTTGTACTTTCCTTACACCAGGTGTCCTGACAGCTGGAATTCCAAATTCCTCATCAAGA CTTTGTTCAGAACCATCTGAATCCATGTCTACATGTGAAAAACCTGATGATGCATCAACC ATAAAGGGAGGTTCATCAACCTTTTCCTTTCCTTTTCGTGATACATTCCCTGTTCCTGTT GGTGGAGTAACCTGCGTACGTAGTCTACCATTCCATGGTTTCTCAACAGAGCCACGAGAA GAGGACTCTTGTGGTCCACGAGTACCTGCAGGTAATATCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9UQ35 |
Definition |
sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein 2 OS=Homo sapiens |
Align length |
116 |
Score (bit) |
36.2 |
E-value |
0.094 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A5AIJ8 |
Definition |
tr|A5AIJ8|A5AIJ8_VITVI Putative uncharacterized protein OS=Vitis vinifera |
Align length |
51 |
Score (bit) |
59.3 |
E-value |
1.0e-07 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920758|Adiantum capillus-veneris mRNA, clone: YMU001_000141_B07. (520 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A5AIJ8|A5AIJ8_VITVI Putative uncharacterized protein OS=Vitis... 59 1e-07 tr|A5BEI8|A5BEI8_VITVI Putative uncharacterized protein OS=Vitis... 58 3e-07 tr|A5ART6|A5ART6_VITVI Putative uncharacterized protein OS=Vitis... 58 3e-07 tr|A5BLV0|A5BLV0_VITVI Putative uncharacterized protein OS=Vitis... 57 4e-07 tr|Q8L700|Q8L700_ARATH Putative uncharacterized protein (Putativ... 52 2e-05 tr|O22175|O22175_ARATH Putative retroelement pol polyprotein OS=... 52 2e-05 tr|Q01M93|Q01M93_ORYSA OSIGBa0146N20.7 protein OS=Oryza sativa G... 49 1e-04 tr|A5BPL3|A5BPL3_VITVI Putative uncharacterized protein OS=Vitis... 49 1e-04 tr|Q9ZPU4|Q9ZPU4_ARATH Putative retroelement pol polyprotein OS=... 49 2e-04 tr|A5BNR5|A5BNR5_VITVI Putative uncharacterized protein OS=Vitis... 49 2e-04 tr|A5BA39|A5BA39_VITVI Putative uncharacterized protein OS=Vitis... 49 2e-04 tr|A5CBQ4|A5CBQ4_VITVI Putative uncharacterized protein OS=Vitis... 48 3e-04 tr|A5BVX7|A5BVX7_VITVI Putative uncharacterized protein OS=Vitis... 48 3e-04 tr|A5B7X7|A5B7X7_VITVI Putative uncharacterized protein OS=Vitis... 48 3e-04 tr|A5BZM8|A5BZM8_VITVI Putative uncharacterized protein OS=Vitis... 47 6e-04 tr|A5BHT9|A5BHT9_VITVI Putative uncharacterized protein OS=Vitis... 47 6e-04 tr|Q01J50|Q01J50_ORYSA OSIGBa0145M07.7 protein OS=Oryza sativa G... 47 7e-04 tr|A5C6H4|A5C6H4_VITVI Putative uncharacterized protein OS=Vitis... 47 7e-04 tr|A5ARV9|A5ARV9_VITVI Putative uncharacterized protein OS=Vitis... 47 7e-04 tr|A5ALK4|A5ALK4_VITVI Putative uncharacterized protein OS=Vitis... 46 0.001 tr|A5AHP9|A5AHP9_VITVI Putative uncharacterized protein OS=Vitis... 46 0.001 tr|A5BT67|A5BT67_VITVI Putative uncharacterized protein OS=Vitis... 46 0.001 tr|A5BZH7|A5BZH7_VITVI Putative uncharacterized protein OS=Vitis... 45 0.002 tr|Q9SJ99|Q9SJ99_ARATH Putative retroelement pol polyprotein OS=... 45 0.002 tr|A5B919|A5B919_VITVI Putative uncharacterized protein OS=Vitis... 45 0.002 tr|A5AHH2|A5AHH2_VITVI Putative uncharacterized protein OS=Vitis... 45 0.002 tr|Q53QA4|Q53QA4_ORYSJ Retrotransposon protein, putative, Ty1-co... 45 0.003 tr|Q337X2|Q337X2_ORYSJ Retrotransposon protein, putative, unclas... 45 0.003 tr|Q2QQ81|Q2QQ81_ORYSJ Retrotransposon protein, putative, Ty1-co... 45 0.003 tr|Q2QPE3|Q2QPE3_ORYSJ Retrotransposon protein, putative, Ty1-co... 45 0.003
>tr|A5AIJ8|A5AIJ8_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031733 PE=4 SV=1 Length = 1322
Score = 59.3 bits (142), Expect = 1e-07 Identities = 25/51 (49%), Positives = 33/51 (64%) Frame = -3
Query: 155 YLAHHRAYMAKVIQDVEPTCFEDAVGNVHWDDAMNEEMAALGANDTWELVS 3 Y HR++ A V QD+EPT + +A + HW +AM E+AAL AN TW L S Sbjct: 818 YSPQHRSFTAAVSQDIEPTSYAEAASHSHWQEAMQSELAALEANHTWSLTS 868
>tr|A5BEI8|A5BEI8_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043423 PE=4 SV=1 Length = 1059
Score = 57.8 bits (138), Expect = 3e-07 Identities = 24/51 (47%), Positives = 32/51 (62%) Frame = -3
Query: 155 YLAHHRAYMAKVIQDVEPTCFEDAVGNVHWDDAMNEEMAALGANDTWELVS 3 Y HR++ V QD+EPT + +A + HW +AM E+AAL AN TW L S Sbjct: 910 YSPQHRSFTTAVSQDIEPTSYAEAASHSHWQEAMQSELAALEANHTWSLTS 960
>tr|A5ART6|A5ART6_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028058 PE=4 SV=1 Length = 1125
Score = 57.8 bits (138), Expect = 3e-07 Identities = 24/51 (47%), Positives = 32/51 (62%) Frame = -3
Query: 155 YLAHHRAYMAKVIQDVEPTCFEDAVGNVHWDDAMNEEMAALGANDTWELVS 3 Y HR++ A V QD+EPT + +A + HW +AM E+A L AN TW L S Sbjct: 613 YSPQHRSFTAAVSQDIEPTSYAEATSHSHWQEAMQSELATLEANHTWSLTS 663
>tr|A5BLV0|A5BLV0_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033389 PE=4 SV=1 Length = 1279
Score = 57.4 bits (137), Expect = 4e-07 Identities = 24/51 (47%), Positives = 32/51 (62%) Frame = -3
Query: 155 YLAHHRAYMAKVIQDVEPTCFEDAVGNVHWDDAMNEEMAALGANDTWELVS 3 Y HR++ A V QD+EPT + + + HW +AM E+AAL AN TW L S Sbjct: 795 YSPQHRSFTAAVSQDIEPTSYAEXASHSHWQEAMQSELAALEANHTWSLTS 845
>tr|Q8L700|Q8L700_ARATH Putative uncharacterized protein (Putative retroelement pol polyprotein) (At2g23330) OS=Arabidopsis thaliana GN=At2g23330 PE=2 SV=1 Length = 776
Score = 51.6 bits (122), Expect = 2e-05 Identities = 24/54 (44%), Positives = 36/54 (66%) Frame = -3
Query: 170 LT*DGYLAHHRAYMAKVIQDVEPTCFEDAVGNVHWDDAMNEEMAALGANDTWEL 9 LT GY A+H A+MA ++ EP F+DA+ W +AM++E+ AL AN TW++ Sbjct: 245 LTNSGYSANHIAFMAAILDSNEPKHFKDAILIKEWCEAMSKEIDALEANHTWDI 298
>tr|O22175|O22175_ARATH Putative retroelement pol polyprotein OS=Arabidopsis thaliana GN=At2g23330 PE=2 SV=1 Length = 1496
Score = 51.6 bits (122), Expect = 2e-05 Identities = 24/54 (44%), Positives = 36/54 (66%) Frame = -3
Query: 170 LT*DGYLAHHRAYMAKVIQDVEPTCFEDAVGNVHWDDAMNEEMAALGANDTWEL 9 LT GY A+H A+MA ++ EP F+DA+ W +AM++E+ AL AN TW++ Sbjct: 965 LTNSGYSANHIAFMAAILDSNEPKHFKDAILIKEWCEAMSKEIDALEANHTWDI 1018
>tr|Q01M93|Q01M93_ORYSA OSIGBa0146N20.7 protein OS=Oryza sativa GN=OSIGBa0146N20.7 PE=4 SV=1 Length = 1335
Score = 49.3 bits (116), Expect = 1e-04 Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 4/113 (3%) Frame = -3
Query: 332 VDMDSDGSEQSLDEEFGIPAVRTPGVRKVQEDARGQRSDPGPRRSNRVRNPVQKLT*DGY 153 VD D + D++ +TP + +++ED R+S R P ++L + Sbjct: 747 VDEQDDHNNDVADDDAHDDVQQTPPILQLEEDL-----SIAQRKSKRTTKPPKRLIEECN 801
Query: 152 LAHHRAYMAKVIQDV-EPTCFEDAV---GNVHWDDAMNEEMAALGANDTWELV 6 L+++ A+ +++V EP +++AV + +W AM+EEM +L N TWE+V Sbjct: 802 LSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVV 854
>tr|A5BPL3|A5BPL3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028741 PE=4 SV=1 Length = 1262
Score = 48.9 bits (115), Expect = 1e-04 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Frame = -3
Query: 215 PGPRRSNRVRNPVQK-LT*DGYLAHHRAYMAKVIQDVEPTCFEDAVGNVHWDDAMNEEMA 39 P P+ + P+ + D + H+R ++A +I +P F++A+ +V W +M+EE+ Sbjct: 770 PSPQHPSGTPYPIAHYINCDNFSVHYRKFLAAIISSNDPKSFKEAIKDVGWXKSMHEEIL 829
Query: 38 ALGANDTWEL 9 AL N TW L Sbjct: 830 ALEENGTWTL 839
>tr|Q9ZPU4|Q9ZPU4_ARATH Putative retroelement pol polyprotein OS=Arabidopsis thaliana GN=At2g13940 PE=2 SV=1 Length = 1501
Score = 48.5 bits (114), Expect = 2e-04 Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 8/149 (5%) Frame = -3
Query: 428 TPPTGTGNVSRKGKEKVDEPPFMVDASSGFSHVDMDSDGSEQS------LDEEFGIPAVR 267 TPP+ +VS G P +V +S S+++ L++ A+ Sbjct: 881 TPPSSPLSVSPSGSPNTPTTPIVVPVASPIPVSPPKQRKSKRATHPPPKLNDYVLYNAMY 940
Query: 266 TPG-VRKVQEDARGQRSDPGPRRSNRVRNPVQKLT*DG-YLAHHRAYMAKVIQDVEPTCF 93 TP + + D + PG + P+ D + + HRAY+A + +VEP F Sbjct: 941 TPSSIHALPADPSQSSTVPG-----KSLFPLTDYVSDAAFSSSHRAYLAAITDNVEPKHF 995
Query: 92 EDAVGNVHWDDAMNEEMAALGANDTWELV 6 ++AV W+DAM E+ AL N TW++V Sbjct: 996 KEAVQIKVWNDAMFTEVDALEINKTWDIV 1024
>tr|A5BNR5|A5BNR5_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035665 PE=4 SV=1 Length = 1813
Score = 48.5 bits (114), Expect = 2e-04 Identities = 21/47 (44%), Positives = 30/47 (63%) Frame = -3
Query: 146 HHRAYMAKVIQDVEPTCFEDAVGNVHWDDAMNEEMAALGANDTWELV 6 HHRA++A + EP+ FE A + W AM+ E+ AL N+TWE+V Sbjct: 1206 HHRAFLALLTAQTEPSSFEQADCDPRWRQAMSTELQALERNNTWEMV 1252
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