BP920759
Clone id YMU001_000141_B09
Library
Length 420
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000141_B09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GTGGGATCGGGCCGTCTGGGGCGAGCTTATTCTCTTGGCTACAATTGTGATGACGAAAAA
GAGCTGGAGGCGGCTTTGAGGGAGGTGATGTATCCAGGGTCAGGGTCGTTGAAGAGAGCG
AAGTCGAAGTTACCGTGTTGCTGTTAAGAAAATTATATTAAGGAAATCATATATATGCAC
CTGTGCATGTTAGCTTCGAGACGTAATCTCCTTGGTTGATTGCCCGCCCTTCTGCTACGC
AAGTATGAGCCATATAGTTCTGTTTTGAAGGCCCAGCCTGTTGTGTGGTTCAATTTGAGG
TAATGCAATGATGGCCAACCACTTATTGAAAGCAAGGTTGTCAATGTGGGGGTACTTTGA
TGGCTCGGACCCCCTCAGGGAGTTCACTTGTAAATATATGAACAAAGTACGTGAGCTCAA
■■Homology search results ■■ -
sp_hit_id Q9FHK0
Definition sp|Q9FHK0|FB284_ARATH F-box protein At5g45360 OS=Arabidopsis thaliana
Align length 23
Score (bit) 40.4
E-value 0.003
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920759|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_B09.
(420 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9FHK0|FB284_ARATH F-box protein At5g45360 OS=Arabidopsis tha... 40 0.003
sp|Q1AVH3|ATP6_RUBXD ATP synthase subunit a OS=Rubrobacter xylan... 33 0.46
sp|Q11I83|ILVC_MESSB Ketol-acid reductoisomerase OS=Mesorhizobiu... 30 3.0

>sp|Q9FHK0|FB284_ARATH F-box protein At5g45360 OS=Arabidopsis
thaliana GN=At5g45360 PE=2 SV=1
Length = 316

Score = 40.4 bits (93), Expect = 0.003
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +1

Query: 13 RLGRAYSLGYNCDDEKELEAALR 81
RL RA+ LGYNCDDE+ELE LR
Sbjct: 292 RLARAFELGYNCDDEQELERTLR 314


>sp|Q1AVH3|ATP6_RUBXD ATP synthase subunit a OS=Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129) GN=atpB PE=3
SV=1
Length = 258

Score = 33.1 bits (74), Expect = 0.46
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -1

Query: 414 SRTLFIYLQVNSLRGSEPSKYPHIDNLAFNKWLAI--IALPQIEPHNRLGL 268
S TLFI+L V ++ G P+ YP N++F LA+ L Q E R GL
Sbjct: 98 SLTLFIFLLVLNIIGLFPNSYPVTSNISFTATLALFTFVLTQYEGVRRNGL 148


>sp|Q11I83|ILVC_MESSB Ketol-acid reductoisomerase OS=Mesorhizobium
sp. (strain BNC1) GN=ilvC PE=3 SV=1
Length = 339

Score = 30.4 bits (67), Expect = 3.0
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1

Query: 1 VGSGRLGRAYSLGYNCDDEKELEAALREVMYPGSGSLKRAKS 126
+G G GRA++L K+L ALR PGS S K+A++
Sbjct: 22 IGYGSQGRAHALNLKDSGAKDLAVALR----PGSASAKKAEA 59


tr_hit_id A9NVC3
Definition tr|A9NVC3|A9NVC3_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 36
Score (bit) 58.5
E-value 2.0e-07
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920759|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_B09.
(420 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9NVC3|A9NVC3_PICSI Putative uncharacterized protein OS=Picea... 59 2e-07
tr|A7QKL8|A7QKL8_VITVI Chromosome chr2 scaffold_113, whole genom... 48 2e-04
tr|A9SKW4|A9SKW4_PHYPA Predicted protein (Fragment) OS=Physcomit... 48 3e-04
tr|A9Z0N6|A9Z0N6_PONTR F-box protein OS=Poncirus trifoliata PE=2... 45 0.001
tr|Q5Z9H2|Q5Z9H2_ORYSJ cDNA clone:006-201-G12, full insert seque... 45 0.002
tr|Q0D9L9|Q0D9L9_ORYSJ Os06g0709100 protein OS=Oryza sativa subs... 45 0.002
tr|A2YGV7|A2YGV7_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.002
tr|B6TRX2|B6TRX2_MAIZE F-box domain containing protein OS=Zea ma... 43 0.007
tr|B4FMN1|B4FMN1_MAIZE Putative uncharacterized protein OS=Zea m... 43 0.007
tr|Q00XY8|Q00XY8_OSTTA F-box family protein-like (ISS) OS=Ostreo... 33 7.0

>tr|A9NVC3|A9NVC3_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 353

Score = 58.5 bits (140), Expect = 2e-07
Identities = 26/36 (72%), Positives = 30/36 (83%)
Frame = +1

Query: 4 GSGRLGRAYSLGYNCDDEKELEAALREVMYPGSGSL 111
G G+L RAY LGYNC+DEKELE ALREV+YPGS +
Sbjct: 318 GDGQLARAYLLGYNCNDEKELEDALREVIYPGSNRI 353


>tr|A7QKL8|A7QKL8_VITVI Chromosome chr2 scaffold_113, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00001173001
PE=4 SV=1
Length = 285

Score = 48.1 bits (113), Expect = 2e-04
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = +1

Query: 1 VGSGRLGRAYSLGYNCDDEKELEAALR 81
+GSGR RAY LGYNC DEKELEAALR
Sbjct: 257 MGSGRFARAYLLGYNCADEKELEAALR 283


>tr|A9SKW4|A9SKW4_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_131539 PE=4 SV=1
Length = 309

Score = 47.8 bits (112), Expect = 3e-04
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +1

Query: 1 VGSGRLGRAYSLGYNCDDEKELEAALR 81
+GSGRLGRAY LGYNC DE+EL+AA R
Sbjct: 233 LGSGRLGRAYLLGYNCADERELDAAYR 259


>tr|A9Z0N6|A9Z0N6_PONTR F-box protein OS=Poncirus trifoliata PE=2
SV=1
Length = 330

Score = 45.4 bits (106), Expect = 0.001
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +1

Query: 1 VGSGRLGRAYSLGYNCDDEKELEAALR 81
+GSGR RAY LGY+C DEKELEA LR
Sbjct: 302 MGSGRFARAYMLGYSCHDEKELEACLR 328


>tr|Q5Z9H2|Q5Z9H2_ORYSJ cDNA clone:006-201-G12, full insert sequence
OS=Oryza sativa subsp. japonica GN=P0655A07.13 PE=2 SV=1
Length = 375

Score = 44.7 bits (104), Expect = 0.002
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +1

Query: 1 VGSGRLGRAYSLGYNCDDEKELEAALR 81
+GSGR RAY LGY+C DEKELE ALR
Sbjct: 347 MGSGRFARAYQLGYSCADEKELEYALR 373


>tr|Q0D9L9|Q0D9L9_ORYSJ Os06g0709100 protein OS=Oryza sativa subsp.
japonica GN=Os06g0709100 PE=4 SV=1
Length = 250

Score = 44.7 bits (104), Expect = 0.002
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +1

Query: 1 VGSGRLGRAYSLGYNCDDEKELEAALR 81
+GSGR RAY LGY+C DEKELE ALR
Sbjct: 222 MGSGRFARAYQLGYSCADEKELEYALR 248


>tr|A2YGV7|A2YGV7_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_24420 PE=4 SV=1
Length = 377

Score = 44.7 bits (104), Expect = 0.002
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +1

Query: 1 VGSGRLGRAYSLGYNCDDEKELEAALR 81
+GSGR RAY LGY+C DEKELE ALR
Sbjct: 349 MGSGRFARAYQLGYSCADEKELEYALR 375


>tr|B6TRX2|B6TRX2_MAIZE F-box domain containing protein OS=Zea mays
PE=2 SV=1
Length = 375

Score = 43.1 bits (100), Expect = 0.007
Identities = 20/27 (74%), Positives = 21/27 (77%)
Frame = +1

Query: 1 VGSGRLGRAYSLGYNCDDEKELEAALR 81
+GSGR RA LGYNC DEKELE ALR
Sbjct: 347 MGSGRYARAIMLGYNCTDEKELEDALR 373


>tr|B4FMN1|B4FMN1_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 383

Score = 43.1 bits (100), Expect = 0.007
Identities = 20/27 (74%), Positives = 21/27 (77%)
Frame = +1

Query: 1 VGSGRLGRAYSLGYNCDDEKELEAALR 81
+GSGR RA LGYNC DEKELE ALR
Sbjct: 355 MGSGRYARAIMLGYNCTDEKELEDALR 381


>tr|Q00XY8|Q00XY8_OSTTA F-box family protein-like (ISS)
OS=Ostreococcus tauri GN=Ot12g01730 PE=4 SV=1
Length = 280

Score = 33.1 bits (74), Expect = 7.0
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1

Query: 10 GRLGRAYSLGYNCDDEKELEAAL 78
G GRA+ +GY CD+E EL+ AL
Sbjct: 249 GYFGRAFEVGYGCDNELELQTAL 271