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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920764
Clone id YMU001_000141_C02
Library
Length 506
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000141_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTAGATATTACCTAGCAGGTACTCCTGCCGTGAGCAGGAGATGCTTATGGATTCCACCCC
CCTGCAACATTATCTTTCTGCCCTTCAGTATCTGAAATGAACAACTTAACAGAACCTCCT
CTTGCAAGTGCTTGCACACTGTGGGAGTAATGAACCACAGTTTGTCTTTACTCACGGTTC
ATAACTCCCACAGCCTTCGTCTTCTGCAAACACTCTTTGCCTCACATCTCTGCCCCTCGA
TCAACGTTGTCACACAACATTCTGATGAGTATGAGATCAGGTGCAGACTCCTCACATTAA
CAATCTCCATAGCAGCTGAATCGCAGTGGCTTTCCTCGCAGAAACATACAAAAGTACCTG
TTTTGGTGCAGATCAGTCACCCTCCAAAGTCAAAATACTAGCGGGCATCCAGTCTTCGCA
GGTGTCAGAAGCGTGCAAGCACTGAGGATTTCACTTGCAGACTGCAACTAGCCTTTTAGC
CGCTCCGTGCTCTTAAAGCTTGAAGA
■■Homology search results ■■ -
sp_hit_id P02778
Definition sp|P02778|CXL10_HUMAN C-X-C motif chemokine 10 OS=Homo sapiens
Align length 75
Score (bit) 33.5
E-value 0.58
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920764|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_C02.
         (506 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P02778|CXL10_HUMAN C-X-C motif chemokine 10 OS=Homo sapiens G...    33   0.58 
sp|Q11107|LIN13_CAEEL Zinc finger protein lin-13 OS=Caenorhabdit...    31   3.8  
sp|Q865F5|CXL10_MACNE C-X-C motif chemokine 10 OS=Macaca nemestr...    31   3.8  
sp|Q8MIZ1|CXL10_MACMU C-X-C motif chemokine 10 OS=Macaca mulatta...    31   3.8  
sp|Q90701|TEAD3_CHICK Transcriptional enhancer factor TEF-5 OS=G...    30   4.9  
sp|P07408|HBA_SQUAC Hemoglobin subunit alpha OS=Squalus acanthia...    30   4.9  

>sp|P02778|CXL10_HUMAN C-X-C motif chemokine 10 OS=Homo sapiens
           GN=CXCL10 PE=1 SV=2
          Length = 98

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +3

Query: 63  CNIIFLPFS-I*NEQLNRTSSCKCLHTVGVMNHSLSLLTVHNSHSLRLLQTLFASHLCPS 239
           C +IFL  S I    L+RT  C C   + + N  +      N  SL  L+ + AS  CP 
Sbjct: 9   CCLIFLTLSGIQGVPLSRTVRCTC---ISISNQPV------NPRSLEKLEIIPASQFCPR 59

Query: 240 INVVTQHSDEYEIRC 284
           + ++     + E RC
Sbjct: 60  VEIIATMKKKGEKRC 74


>sp|Q11107|LIN13_CAEEL Zinc finger protein lin-13 OS=Caenorhabditis
            elegans GN=lin-13 PE=2 SV=2
          Length = 2248

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +3

Query: 171  LTVHNSHSLRLLQTLFASHLCPSINVVTQHSDEYEIRCRLLTLTISIAAES 323
            +++HN H+  L+Q   A   CP+  +    +DE E R ++L  TI + + S
Sbjct: 1705 ISIHNGHNYSLVQRFGA---CPAQLLNYDPTDELEFRSQILNKTIQLVSPS 1752


>sp|Q865F5|CXL10_MACNE C-X-C motif chemokine 10 OS=Macaca nemestrina
           GN=CXCL10 PE=3 SV=1
          Length = 98

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +3

Query: 63  CNIIFLPFS-I*NEQLNRTSSCKCLHTVGVMNHSLSLLTVHNSHSLRLLQTLFASHLCPS 239
           C ++FL  S I    L+RT  C C   + + N  +      N  SL  L+ +  S  CP 
Sbjct: 9   CCLVFLTLSGIQGIPLSRTVRCTC---ISISNQPV------NPRSLEKLEIIPPSQFCPH 59

Query: 240 INVVTQHSDEYEIRC 284
           + ++     + E RC
Sbjct: 60  VEIIATMKKKGEKRC 74


>sp|Q8MIZ1|CXL10_MACMU C-X-C motif chemokine 10 OS=Macaca mulatta
           GN=CXCL10 PE=3 SV=1
          Length = 98

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +3

Query: 63  CNIIFLPFS-I*NEQLNRTSSCKCLHTVGVMNHSLSLLTVHNSHSLRLLQTLFASHLCPS 239
           C ++FL  S I    L+RT  C C   + + N  +      N  SL  L+ +  S  CP 
Sbjct: 9   CCLVFLTLSGIQGIPLSRTVRCTC---ISISNQPV------NPRSLEKLEIIPPSQFCPH 59

Query: 240 INVVTQHSDEYEIRC 284
           + ++     + E RC
Sbjct: 60  VEIIATMKKKGEKRC 74


>sp|Q90701|TEAD3_CHICK Transcriptional enhancer factor TEF-5
           OS=Gallus gallus GN=TEAD3 PE=2 SV=2
          Length = 433

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
 Frame = +1

Query: 16  QVLLP*AGDAYGFHPPATLSFCPSVSEMNNLTE-PPLASACTLWE**TTVCLYSRFITPT 192
           Q + P A  AY   PP      PS++    L   PP ASA  +W+  T      R +  +
Sbjct: 174 QDIKPFAQPAYPIQPPMP----PSLASYEPLAPLPPAASAVPVWQDRTIASAKLRLLEYS 229

Query: 193 AFV--------FCKHSLPHISAPRSTLSHNILMSM 273
           AF+        + KH   HI     + S  +L +M
Sbjct: 230 AFMEVPRDAETYSKHLFVHIGQTNPSYSDPLLEAM 264


>sp|P07408|HBA_SQUAC Hemoglobin subunit alpha OS=Squalus acanthias
           GN=HBA PE=1 SV=1
          Length = 141

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
 Frame = -1

Query: 287 SAPDLILIRMLCDNVDRGAEM*GKECLQKTKAVGVMNRE*RQTVVHYS-HSVQALARGGS 111
           SA D   I+ L  ++   AE  G E L +  A     +        +S +  +  A GG 
Sbjct: 3   SAADKTAIKHLTGSLRTNAEAWGAESLARMFATTPSTKTYFSKFTDFSANGKRVKAHGGK 62

Query: 110 VKLFISDTEGQKDNVAGGWNP*ASPAHGRSTC 15
           V   ++D     DNVAG  +P  +  HG + C
Sbjct: 63  VLNAVADATDHLDNVAGHLDP-LAVLHGTTLC 93
tr_hit_id B4IXA8
Definition tr|B4IXA8|B4IXA8_DROGR GH16866 OS=Drosophila grimshawi
Align length 76
Score (bit) 33.9
E-value 4.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920764|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_C02.
         (506 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4IXA8|B4IXA8_DROGR GH16866 OS=Drosophila grimshawi GN=GH1686...    34   4.6  
tr|A8MVL0|A8MVL0_HUMAN Putative uncharacterized protein CXCL10 O...    33   6.0  
tr|A6X2I2|A6X2I2_OCHA4 IS66 Orf2 family protein OS=Ochrobactrum ...    33   7.8  

>tr|B4IXA8|B4IXA8_DROGR GH16866 OS=Drosophila grimshawi GN=GH16866
           PE=4 SV=1
          Length = 1984

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 20/76 (26%), Positives = 36/76 (47%)
 Frame = +3

Query: 150 MNHSLSLLTVHNSHSLRLLQTLFASHLCPSINVVTQHSDEYEIRCRLLTLTISIAAESQW 329
           M HS+     H    LR ++TL   ++  S  +VT   + +EI+ +LL +T  +    Q 
Sbjct: 137 MLHSIDTKNKHIKRLLREIETLQNQNIAQSKTIVTHEQELHEIKSKLLEITKELTKFEQE 196

Query: 330 LSSQKHTKVPVLVQIS 377
             S K  +    +++S
Sbjct: 197 RKSLKQREQQQCLEVS 212


>tr|A8MVL0|A8MVL0_HUMAN Putative uncharacterized protein CXCL10
           OS=Homo sapiens GN=CXCL10 PE=4 SV=1
          Length = 98

 Score = 33.5 bits (75), Expect = 6.0
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +3

Query: 63  CNIIFLPFS-I*NEQLNRTSSCKCLHTVGVMNHSLSLLTVHNSHSLRLLQTLFASHLCPS 239
           C +IFL  S I    L+RT  C C   + + N  +      N  SL  L+ + AS  CP 
Sbjct: 9   CCLIFLTLSGIQGVPLSRTVRCTC---ISISNQPV------NPRSLEKLEIIPASQFCPR 59

Query: 240 INVVTQHSDEYEIRC 284
           + ++     + E RC
Sbjct: 60  VEIIATMKKKGEKRC 74


>tr|A6X2I2|A6X2I2_OCHA4 IS66 Orf2 family protein OS=Ochrobactrum
           anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168)
           GN=Oant_2725 PE=4 SV=1
          Length = 114

 Score = 33.1 bits (74), Expect = 7.8
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +1

Query: 160 VCLYSRFITPTAFVFCKHSLPHISAPRSTLSHNILMSMRSGAD 288
           VCLYS+ +  T F +     P ISA R  L H+ LM++ +G D
Sbjct: 61  VCLYSKTLEETGFCW-----PGISAARMRLDHSQLMALLAGLD 98