BP920765
Clone id YMU001_000141_C04
Library
Length 238
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000141_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AAATGAAAGAGCTTTCCTAGTAAATAATGTTTGAACTTCGTAGCGTTGAATACCATTCCG
AGTACATCCCTTTCAATGGTTGGATACCCATGCTTTGCTTTACTTATCCCTAACTGAGAA
AATATACTGGATAATTAGTTTTAGCATTTGGTAGAGCTAAAATAGCACCCAGTCGGCCAT
GCTAAAAACATCAACATGTACATGAAAGATAATATTCCAGGCTCGGCTGGTGAAGCAC
■■Homology search results ■■ -
sp_hit_id P04323
Definition sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster
Align length 27
Score (bit) 32.7
E-value 0.58
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920765|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_C04.
(238 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from tra... 33 0.58
sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from tra... 31 1.7
sp|Q5CZR5|NATTL_DANRE Natterin-like protein OS=Danio rerio GN=zg... 30 3.8

>sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from
transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1058

Score = 32.7 bits (73), Expect = 0.58
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = -3

Query: 86 YPTIERDVLGMVFNATKFKHYLLGKLF 6
Y TIE+++L +V+ F+HYLLG+ F
Sbjct: 545 YSTIEKELLAIVWATKTFRHYLLGRHF 571


>sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from
transposon 297 OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1059

Score = 31.2 bits (69), Expect = 1.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -3

Query: 86 YPTIERDVLGMVFNATKFKHYLLGKLF 6
Y IE+++L +V+ F+HYLLG+ F
Sbjct: 544 YSAIEKELLAIVWATKTFRHYLLGRQF 570


>sp|Q5CZR5|NATTL_DANRE Natterin-like protein OS=Danio rerio
GN=zgc:113413 PE=2 SV=1
Length = 315

Score = 30.0 bits (66), Expect = 3.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1

Query: 28 CLNFVALNTIPSTSLSMVGYPCFALLIP 111
C+ F+ LN + ST L+ V YP LIP
Sbjct: 136 CMGFMFLNAVQSTVLTNVNYPTINQLIP 163


tr_hit_id A5B0U4
Definition tr|A5B0U4|A5B0U4_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 33
Score (bit) 34.7
E-value 2.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920765|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_C04.
(238 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A5B0U4|A5B0U4_VITVI Putative uncharacterized protein OS=Vitis... 35 2.4
tr|B6IGQ4|B6IGQ4_CAEBR Putative uncharacterized protein OS=Caeno... 35 2.4
tr|A5B5K3|A5B5K3_VITVI Putative uncharacterized protein OS=Vitis... 34 3.2
tr|A5BFC1|A5BFC1_VITVI Putative uncharacterized protein OS=Vitis... 34 4.1
tr|A5B6I2|A5B6I2_VITVI Putative uncharacterized protein OS=Vitis... 34 4.1
tr|Q4QQD3|Q4QQD3_SCHMA Gag-pol polyprotein OS=Schistosoma manson... 34 4.1
tr|A5BIM2|A5BIM2_VITVI Putative uncharacterized protein OS=Vitis... 33 5.4
tr|A5BDE4|A5BDE4_VITVI Putative uncharacterized protein OS=Vitis... 33 5.4
tr|Q15F61|Q15F61_9MICR Pol polyprotein OS=Nosema bombycis PE=4 SV=1 33 5.4
tr|Q2AA48|Q2AA48_ASPOF Reverse transcriptase family protein OS=A... 33 7.0
tr|Q2AA00|Q2AA00_ASPOF Reverse transcriptase family protein OS=A... 33 7.0
tr|A5CBG2|A5CBG2_VITVI Putative uncharacterized protein OS=Vitis... 33 7.0
tr|A5CAT8|A5CAT8_VITVI Putative uncharacterized protein OS=Vitis... 33 7.0
tr|A5C8Q1|A5C8Q1_VITVI Putative uncharacterized protein OS=Vitis... 33 7.0
tr|A5C3J0|A5C3J0_VITVI Putative uncharacterized protein OS=Vitis... 33 7.0
tr|A5C1L9|A5C1L9_VITVI Putative uncharacterized protein OS=Vitis... 33 7.0
tr|A5C0Q4|A5C0Q4_VITVI Putative uncharacterized protein OS=Vitis... 33 7.0
tr|A5BXP9|A5BXP9_VITVI Putative uncharacterized protein OS=Vitis... 33 7.0
tr|A5BVY6|A5BVY6_VITVI Putative uncharacterized protein OS=Vitis... 33 7.0
tr|A5BUU0|A5BUU0_VITVI Putative uncharacterized protein OS=Vitis... 33 7.0
tr|A5BPP5|A5BPP5_VITVI Putative uncharacterized protein OS=Vitis... 33 7.0
tr|A5BJ16|A5BJ16_VITVI Putative uncharacterized protein (Fragmen... 33 7.0
tr|A5BGI1|A5BGI1_VITVI Putative uncharacterized protein OS=Vitis... 33 7.0
tr|A5B7S8|A5B7S8_VITVI Putative uncharacterized protein OS=Vitis... 33 7.0
tr|A5B6C6|A5B6C6_VITVI Putative uncharacterized protein OS=Vitis... 33 7.0
tr|A5B1R6|A5B1R6_VITVI Putative uncharacterized protein OS=Vitis... 33 7.0
tr|A5AXE9|A5AXE9_VITVI Putative uncharacterized protein OS=Vitis... 33 7.0
tr|A5AUP9|A5AUP9_VITVI Putative uncharacterized protein OS=Vitis... 33 7.0
tr|A5APX6|A5APX6_VITVI Putative uncharacterized protein OS=Vitis... 33 7.0
tr|A5AMT7|A5AMT7_VITVI Putative uncharacterized protein OS=Vitis... 33 7.0

>tr|A5B0U4|A5B0U4_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_043799 PE=4 SV=1
Length = 1993

Score = 34.7 bits (78), Expect = 2.4
Identities = 13/33 (39%), Positives = 25/33 (75%)
Frame = -3

Query: 107 ISKAKHGYPTIERDVLGMVFNATKFKHYLLGKL 9
+++A+ Y TIE+++L +VF+ KF+ YL+G +
Sbjct: 1486 LNEAQRNYTTIEKELLAVVFSLDKFRAYLVGSV 1518


>tr|B6IGQ4|B6IGQ4_CAEBR Putative uncharacterized protein
OS=Caenorhabditis briggsae GN=CBG28064 PE=4 SV=1
Length = 1424

Score = 34.7 bits (78), Expect = 2.4
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -3

Query: 107 ISKAKHGYPTIERDVLGMVFNATKFKHYLLGKLF 6
++ A+ GY IE++ LG++F KF YL G+ F
Sbjct: 798 LTTAQRGYAQIEKEALGLIFAVEKFHRYLHGREF 831


>tr|A5B5K3|A5B5K3_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_012731 PE=4 SV=1
Length = 1453

Score = 34.3 bits (77), Expect = 3.2
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -3

Query: 107 ISKAKHGYPTIERDVLGMVFNATKFKHYLLG 15
++KA+ Y T E+++L MVF KF+ YL+G
Sbjct: 972 LNKAQRNYTTTEKELLAMVFALDKFRAYLVG 1002


>tr|A5BFC1|A5BFC1_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_037608 PE=4 SV=1
Length = 1589

Score = 33.9 bits (76), Expect = 4.1
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -3

Query: 107 ISKAKHGYPTIERDVLGMVFNATKFKHYLLG 15
++KA+ Y T ER++L +VF KF+ YL+G
Sbjct: 1098 LNKAQRNYTTTERELLAVVFALDKFRAYLVG 1128


>tr|A5B6I2|A5B6I2_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_003565 PE=4 SV=1
Length = 383

Score = 33.9 bits (76), Expect = 4.1
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = -3

Query: 107 ISKAKHGYPTIERDVLGMVFNATKFKHYLLG 15
+++A+ Y TIE+++L +VF KF+ YL+G
Sbjct: 31 LNEAQRNYTTIEKELLAVVFTLDKFRAYLVG 61


>tr|Q4QQD3|Q4QQD3_SCHMA Gag-pol polyprotein OS=Schistosoma mansoni
PE=2 SV=1
Length = 1154

Score = 33.9 bits (76), Expect = 4.1
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = -3

Query: 107 ISKAKHGYPTIERDVLGMVFNATKFKHYLLGKLFH 3
++ A+ Y TIE++ L +V+ K++ YLLG+ FH
Sbjct: 737 LTPAEQKYSTIEKECLAIVWAVDKWRPYLLGRRFH 771


>tr|A5BIM2|A5BIM2_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_007300 PE=4 SV=1
Length = 426

Score = 33.5 bits (75), Expect = 5.4
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -3

Query: 107 ISKAKHGYPTIERDVLGMVFNATKFKHYLLG 15
++ A+ Y TIE ++L +VF KF++YLLG
Sbjct: 307 LNDAQKNYTTIENELLAVVFALXKFRNYLLG 337


>tr|A5BDE4|A5BDE4_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_033762 PE=4 SV=1
Length = 414

Score = 33.5 bits (75), Expect = 5.4
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = -3

Query: 107 ISKAKHGYPTIERDVLGMVFNATKFKHYLLG 15
+++A+ Y TIE+++L +VF KF+ YL+G
Sbjct: 31 LNEAQKNYTTIEKELLAVVFTLDKFRAYLVG 61


>tr|Q15F61|Q15F61_9MICR Pol polyprotein OS=Nosema bombycis PE=4 SV=1
Length = 717

Score = 33.5 bits (75), Expect = 5.4
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3

Query: 107 ISKAKHGYPTIERDVLGMVFNATKFKHYLLGKLF 6
+ A+ Y E+++LG+V F+HYLLGK F
Sbjct: 284 LEPAEKNYTVTEKELLGVVKGVDHFRHYLLGKPF 317


>tr|Q2AA48|Q2AA48_ASPOF Reverse transcriptase family protein
OS=Asparagus officinalis GN=19.t00011 PE=4 SV=1
Length = 1181

Score = 33.1 bits (74), Expect = 7.0
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -3

Query: 98 AKHGYPTIERDVLGMVFNATKFKHYLLGKLFH 3
A+H Y +E++ L +VF K +HYL+G+ +
Sbjct: 1016 AEHRYNPVEKECLALVFAVQKMRHYLVGQTIY 1047