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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920766
Clone id YMU001_000141_C05
Library
Length 438
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000141_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTACTTCCGACATTTTTCCTAGCTGCTGCGGTTCATAATCACCAACCCTTTCAAAGTCTG
CATAATCTTGTGATTCAGTGGCCGTGGCAGCCTCTCTTTCAGCCCTCCTGCTTATTAGCA
ATCCCAAGCAAAGGATTTAACTCCTTTCCTTTGATGTCTTTTGCGACTTCCGCACTTCTG
CGACGTAAGCTGTTCATTTCCTCCTCACTCAGACGTAGAGGAACTCTGGACCCCGACGCA
TTCTCTGCCTCCCTACAGCTACAGAAATTCCTATCACCGCTTCCATAATTCAAGTCCTTC
TTTGGTACTGATTTGCAAACAGAAGCCATACTAATATTGGCTTCGTCGTTTACCATACAC
TGAGAACCACTAATTGAAGCTTCTTGGGAATCAGTATCACAAGCTTCTTCGTCCCCAGCT
GCTCGCTGTTTGCTGAGT
■■Homology search results ■■ -
sp_hit_id Q60BY3
Definition sp|Q60BY3|AROK_METCA Shikimate kinase OS=Methylococcus capsulatus
Align length 40
Score (bit) 30.8
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920766|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_C05.
         (438 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q60BY3|AROK_METCA Shikimate kinase OS=Methylococcus capsulatu...    31   2.6  
sp|Q69CM7|MYBPP_RAT MYCBP-associated protein OS=Rattus norvegicu...    30   4.4  
sp|Q04500|UTP14_YEAST U3 small nucleolar RNA-associated protein ...    30   5.7  
sp|Q9LX16|EIL4_ARATH Putative ETHYLENE INSENSITIVE 3-like 4 prot...    30   5.7  
sp|Q23868|TAGC_DICDI Prestalk-specific protein tagC OS=Dictyoste...    29   7.5  
sp|Q15111|PLCL1_HUMAN Inactive phospholipase C-like protein 1 OS...    29   7.5  
sp|Q90WW4|IGF2A_XENLA Insulin-like growth factor II-A OS=Xenopus...    29   9.8  

>sp|Q60BY3|AROK_METCA Shikimate kinase OS=Methylococcus capsulatus
           GN=aroK PE=3 SV=1
          Length = 179

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 260 SCREAENASGSRVPLRLSEEEMNSLRRRSAEVAKDIKGKE 141
           S +E E  +G  VP+    E     RRR +EV  D+ GKE
Sbjct: 35  SDKEIERRTGVTVPMIFEYEGEAGFRRRESEVIADLTGKE 74


>sp|Q69CM7|MYBPP_RAT MYCBP-associated protein OS=Rattus norvegicus
           GN=Mycbpap PE=2 SV=1
          Length = 928

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = -2

Query: 302 KKDLNYGSGDRNFCSCREAENASGSRVPLRLSEEEMNSLRRRSAEVAKDIKGKELNPLL 126
           K+D   G+ ++   S R+ E   GS+ P +  E+ +NS ++++ +  K +K    + LL
Sbjct: 808 KEDRRGGAQEKKQLSARDKEEKKGSKTPSK--EDRLNSKKQKAKDDKKVVKSTSRDRLL 864


>sp|Q04500|UTP14_YEAST U3 small nucleolar RNA-associated protein 14
           OS=Saccharomyces cerevisiae GN=UTP14 PE=1 SV=1
          Length = 899

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
 Frame = -2

Query: 437 LSKQRAAGDEEACDTDSQEASISGSQCMVNDEANISMASVCKSV--------PKKDLNYG 282
           +S + ++ +E   +++  E        +  DE +I + ++   +        PK+   YG
Sbjct: 161 ISSESSSSEESESESEDDEEEEDPFDEISEDEEDIELNTITSKLIDETKSKAPKRLDTYG 220

Query: 281 SGDRNFCSCREAENASGSRVPLRLSEEEMNSLRRRSAEVAKDIKGK 144
           SG+ N      A  ASG+   L L++       R+  E A  +KGK
Sbjct: 221 SGEANEYVLPSANAASGASGKLSLTDMMNVIDDRQVIENANLLKGK 266


>sp|Q9LX16|EIL4_ARATH Putative ETHYLENE INSENSITIVE 3-like 4 protein
           OS=Arabidopsis thaliana GN=EIL4 PE=2 SV=1
          Length = 471

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = -2

Query: 398 DTDSQEASISGSQCMVNDEANISMASVCKSVPKKDLNYGSGDRNFCSCREAENASGSRVP 219
           D D QE+S S  +    + +         S PK D+++G GD+N  +  E +   GS   
Sbjct: 286 DQDDQESSGSKRKSESMEPSKSVYTCQNSSCPKSDVSFGFGDKNSRTGHEIQCLYGSNQE 345

Query: 218 LRLSEEEMNSL 186
              S E  +SL
Sbjct: 346 PSQSGEYTSSL 356


>sp|Q23868|TAGC_DICDI Prestalk-specific protein tagC
           OS=Dictyostelium discoideum GN=tagC PE=2 SV=2
          Length = 1741

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 410 EEACDTDSQEASISGSQCMVNDEANISMASVCKSVPKKDL 291
           E  CD DS+  + + +QC +   A   +AS C ++ +K +
Sbjct: 525 ELICDFDSRYCNYTTAQCCLESNATTGLASCCPTLLRKSV 564


>sp|Q15111|PLCL1_HUMAN Inactive phospholipase C-like protein 1
           OS=Homo sapiens GN=PLCL1 PE=1 SV=2
          Length = 1095

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
 Frame = -2

Query: 413 DEEACDTDSQEASISGSQCMVNDEANIS-MASVCKSVPKKDLNYGSGDRNFCSCREAENA 237
           DEEA  +       +G Q  +     +S + S+CKSV  +D       +N+         
Sbjct: 559 DEEAQMSRRMSVDYNGEQKQIRLCRELSDLVSICKSVQYRDFELSMKSQNYWEMCSFSET 618

Query: 236 SGSRVPLRLSEEEMNSLRRRSAEV---AKDIKGKELNP 132
             SR+     E+ +N  ++  + +   A  I    LNP
Sbjct: 619 EASRIANEYPEDFVNYNKKFLSRIYPSAMRIDSSNLNP 656


>sp|Q90WW4|IGF2A_XENLA Insulin-like growth factor II-A OS=Xenopus
           laevis GN=igf2-A PE=2 SV=1
          Length = 217

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = +2

Query: 134 DLTPFL*CLLRLPHFCDVSCSFPPHSDVEELWTPTHSLPPYSYRNSYHRFHNSSPSLVLI 313
           D+  F  C L L    +  C+ P  ++ +    P  ++PP S ++ YH+ H++  S   I
Sbjct: 100 DVCCFKSCDLEL---LETYCAKPTKNERDVSTAPATAIPPLSKQDLYHKHHHTKSSKYDI 156

Query: 314 CKQK 325
            ++K
Sbjct: 157 WQRK 160
tr_hit_id Q6FRP4|Q6FRP4_CANGA Similar to uniprot
Definition tr|Q6FRP4|Q6FRP4_CANGA Similar to uniprot|Q04500 Saccharomyces cerevisiae YML093w YMJ3 OS=Candida glabrata
Align length 109
Score (bit) 39.3
E-value 0.099
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920766|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_C05.
         (438 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6FRP4|Q6FRP4_CANGA Similar to uniprot|Q04500 Saccharomyces c...    39   0.099
tr|A0D4K4|A0D4K4_PARTE Chromosome undetermined scaffold_371, who...    34   4.1  
tr|B3SDB3|B3SDB3_TRIAD Putative uncharacterized protein OS=Trich...    33   5.4  
tr|Q4RW45|Q4RW45_TETNG Chromosome 9 SCAF14991, whole genome shot...    33   7.1  
tr|Q47MY8|Q47MY8_THEFY Band 7 protein OS=Thermobifida fusca (str...    33   7.1  
tr|Q8IJG6|Q8IJG6_PLAF7 Putative uncharacterized protein OS=Plasm...    33   9.2  
tr|Q7RM86|Q7RM86_PLAYO Chromodomain-helicase-DNA-binding protein...    33   9.2  
tr|Q4Z3X5|Q4Z3X5_PLABE Putative uncharacterized protein (Fragmen...    33   9.2  
tr|Q4Y279|Q4Y279_PLACH Putative uncharacterized protein (Fragmen...    33   9.2  
tr|A8WT19|A8WT19_CAEBR CBR-LET-858 protein OS=Caenorhabditis bri...    33   9.2  

>tr|Q6FRP4|Q6FRP4_CANGA Similar to uniprot|Q04500 Saccharomyces
           cerevisiae YML093w YMJ3 OS=Candida glabrata
           GN=CAGL0H06985g PE=4 SV=1
          Length = 878

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
 Frame = -2

Query: 434 SKQRAAGDEEACDTDSQEASISGSQCMVNDEANISMASVCKS--------VPKKDLNYGS 279
           S+  ++ DEE+ D +SQE+     + + +DE +I +A+V           VPKK  NYG 
Sbjct: 161 SEGSSSSDEESSDDESQESEDPFDE-ISDDEEDIDLANVTSKLVKETEMHVPKKLSNYGH 219

Query: 278 GDRNFCSCREAENASGSRVPLRLSEEEMNSL--RRRSAEVAKDIKGKEL 138
           G+ N  +     + SG +   +LS EEM      + +   A  +KGK L
Sbjct: 220 GEANDFALPSLTSESGIQ---KLSMEEMMGAIDDKHAVTQASLLKGKSL 265


>tr|A0D4K4|A0D4K4_PARTE Chromosome undetermined scaffold_371, whole
            genome shotgun sequence. (Fragment) OS=Paramecium
            tetraurelia GN=GSPATT00039248001 PE=4 SV=1
          Length = 1905

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
 Frame = -2

Query: 401  CDTDSQEASISGSQCMVNDEANISMASVCKSVPKKDLNYGS--GDRNFC---SCREAENA 237
            C+++ Q  ++SG  C  N+E NI M  +C++ P    ++    G  + C   SCR  E+ 
Sbjct: 1772 CNSEGQ-INLSGVSCFWNEELNICMERICRNGPSLAQSHADCIGFLSTCQKSSCRRKESC 1830

Query: 236  SGSRVPLRLSEEEMNSLRRRSAEVAKDIKG 147
            +      R +      + R + E   DI G
Sbjct: 1831 ASIFEDKRCATNGFKCILRGACEDIIDIDG 1860


>tr|B3SDB3|B3SDB3_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_62271 PE=4 SV=1
          Length = 137

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -2

Query: 401 CDTDSQEASISGSQCMVNDEANISMASVCKSVPKKDLNYGSGDRNFCSCREAENASGSR 225
           C T +QE SI+  +  + +  N S  +VC S     +  GS     CSC+   N  G R
Sbjct: 22  CQTQAQEQSIASKEDCLKNGLNCSSDAVCSS-----MTNGSYVTYICSCKSGFNGDGFR 75


>tr|Q4RW45|Q4RW45_TETNG Chromosome 9 SCAF14991, whole genome shotgun
           sequence OS=Tetraodon nigroviridis GN=GSTENG00028039001
           PE=3 SV=1
          Length = 467

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 161 LRLPHFCDV-SCSFPPHSDV-EELWTPTHSLPPYSYRNSYHRFHNSSPS 301
           L +P   D  SCSF P + V    WTP H+ P   Y    H+ H +S S
Sbjct: 44  LVMPECADYPSCSFAPKAPVFSTSWTPVHTQPSVGYHPYSHQAHLASDS 92


>tr|Q47MY8|Q47MY8_THEFY Band 7 protein OS=Thermobifida fusca (strain
           YX) GN=Tfu_2148 PE=4 SV=1
          Length = 538

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = -2

Query: 329 MASVCKSVPKKDLNYGSGDRNFCSCREAENASGSRVPLRLSEEEMNSLRRRSAEVAKDIK 150
           + +V  S+P+  +  G GD      R A+   G   P+  S+EE+ +LR R AE+ + I 
Sbjct: 424 LEAVADSLPQL-VQVGDGDAAIDFLRVAQQLIGGTDPVLFSDEEIAALRTRLAEIQERIA 482

Query: 149 GKE 141
            +E
Sbjct: 483 ARE 485


>tr|Q8IJG6|Q8IJG6_PLAF7 Putative uncharacterized protein OS=Plasmodium
            falciparum (isolate 3D7) GN=PF10_0232 PE=4 SV=1
          Length = 3328

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = +2

Query: 200  PPHSDVEELWTPTHSLPP--YSYRNSYHRFHN--SSPSLVLICKQK 325
            P H+++EELWT  H L P  Y+Y  ++ + +N   + SL+   KQK
Sbjct: 1466 PLHNNLEELWTLLHFLNPQQYTYYETFQKKYNEIENTSLIGEAKQK 1511


>tr|Q7RM86|Q7RM86_PLAYO Chromodomain-helicase-DNA-binding protein,
            CHD-1-related OS=Plasmodium yoelii yoelii GN=PY02297 PE=4
            SV=1
          Length = 2541

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = +2

Query: 200  PPHSDVEELWTPTHSLPP--YSYRNSYHRFHN--SSPSLVLICKQK 325
            P H+++EELWT  H L P  Y+Y  ++ + +N   + SL+   KQK
Sbjct: 1088 PLHNNLEELWTLLHFLNPQQYTYYEAFQKKYNEIENTSLIGEAKQK 1133


>tr|Q4Z3X5|Q4Z3X5_PLABE Putative uncharacterized protein (Fragment)
           OS=Plasmodium berghei GN=PB001011.00.0 PE=4 SV=1
          Length = 1536

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = +2

Query: 200 PPHSDVEELWTPTHSLPP--YSYRNSYHRFHN--SSPSLVLICKQK 325
           P H+++EELWT  H L P  Y+Y  ++ + +N   + SL+   KQK
Sbjct: 554 PLHNNLEELWTLLHFLNPQQYTYYEAFQKKYNEIENTSLIGEAKQK 599


>tr|Q4Y279|Q4Y279_PLACH Putative uncharacterized protein (Fragment)
           OS=Plasmodium chabaudi GN=PC000696.01.0 PE=4 SV=1
          Length = 1330

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = +2

Query: 200 PPHSDVEELWTPTHSLPP--YSYRNSYHRFHN--SSPSLVLICKQK 325
           P H+++EELWT  H L P  Y+Y  ++ + +N   + SL+   KQK
Sbjct: 716 PLHNNLEELWTLLHFLNPQQYTYYEAFQKKYNEIENTSLIGEAKQK 761


>tr|A8WT19|A8WT19_CAEBR CBR-LET-858 protein OS=Caenorhabditis briggsae
            GN=Cbr-let-858 PE=4 SV=2
          Length = 935

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
 Frame = -2

Query: 437  LSKQRAAGDEEACDTDSQEAS-ISGSQCMVNDEANISMASVCKSVPKKDLNYGSG-DRNF 264
            L   +++ D  +  +DS ++S  SGS    +D ++ S +   K  PKK    G+   +  
Sbjct: 724  LKAAQSSSDSSSDSSDSSDSSDSSGSSDSSDDSSSSSSSDSSKEPPKKKKKSGTVLKKKE 783

Query: 263  CSCREAENASGSRVPLRLSEEEMNSLRRRSAEVAKDIKGKELNPLLGIANKQEG*KRGCH 84
                + + A G     R ++EE   L+RRS E  +D   +   P  G   +  G  R   
Sbjct: 784  TDTNDHKEARGDSRAERRNDEE--KLKRRSDEGRRDRSAENREPRRGRDRRDSGDDRHDR 841

Query: 83   G 81
            G
Sbjct: 842  G 842