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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920768
Clone id YMU001_000141_C07
Library
Length 454
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000141_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTCAGAAAACCTCCAATACTGATTCTTAAGAGCTAAAATCCAAAAGAAAGCTTTTG
TACAGACTTCCAGCATGTTGAAGATACTCAAATGTAGGACGGCACTTCAAGAGCAAAAAA
ACCTGAAACATTATCCATTGCTAGAAACAACAACACAACCGGGAGAGTTCTATGAATACT
CAAGACTGTCGATTAGATCTGGTGACTTATGCTGATGGAAACCACTGCAGATAACTTTAC
CTGGGATTGAGGAAAAAATGTCCCAAGGATCGTGGCGGCCTCGGGCATTGCTTATCTTAC
GTTCCAGTTGGTACTTGTAGTTATACTTATCGGTGGTCCAGTAGCCGTATGGCTTGACAG
GGTGCGCCCATCTTTGCTTCACCTTCTCGGCGTTGGCCTTGGTGGTAATGATGTGCTCGC
GGATCTTGCGATCGCGTACTTCTGGATCCTCCAT
■■Homology search results ■■ -
sp_hit_id A4IF98
Definition sp|A4IF98|RMI1_BOVIN RecQ-mediated genome instability protein 1 OS=Bos taurus
Align length 41
Score (bit) 33.5
E-value 0.44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920768|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_C07.
         (454 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4IF98|RMI1_BOVIN RecQ-mediated genome instability protein 1 ...    33   0.44 
sp|Q9D4G9|RMI1_MOUSE RecQ-mediated genome instability protein 1 ...    32   1.7  
sp|Q30TW1|RL2_SULDN 50S ribosomal protein L2 OS=Sulfurimonas den...    32   1.7  
sp|Q9H9A7|RMI1_HUMAN RecQ-mediated genome instability protein 1 ...    31   2.9  
sp|Q94A18|PDR1_ARATH Pleiotropic drug resistance protein 1 OS=Ar...    30   3.8  
sp|Q7M8D7|RL2_WOLSU 50S ribosomal protein L2 OS=Wolinella succin...    30   4.9  
sp|Q90029|KITH_RACVI Thymidine kinase OS=Raccoon poxvirus GN=TK ...    29   8.4  

>sp|A4IF98|RMI1_BOVIN RecQ-mediated genome instability protein 1
           OS=Bos taurus GN=RMI1 PE=2 SV=1
          Length = 624

 Score = 33.5 bits (75), Expect = 0.44
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -2

Query: 174 HRTLPVVLLFLAMDNVSGFFALEVPSYI*VSSTCWKSVQKL 52
           HR LP  +L      ++GFFAL++ S + VS   +  +QKL
Sbjct: 66  HRLLPSGILETPKGELNGFFALQINSLVDVSQPAYAQIQKL 106


>sp|Q9D4G9|RMI1_MOUSE RecQ-mediated genome instability protein 1
           OS=Mus musculus GN=Rmi1 PE=2 SV=1
          Length = 616

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 174 HRTLPVVLLFLAMDNVSGFFALEVPSYI*VSSTCWKSVQKL 52
           H  LP  +L L    ++GF+AL++ S + VS   +  +QKL
Sbjct: 66  HPLLPDDILELPKGELNGFYALQINSLVDVSQPAYSQIQKL 106


>sp|Q30TW1|RL2_SULDN 50S ribosomal protein L2 OS=Sulfurimonas
           denitrificans (strain ATCC 33889 / DSM 1251) GN=rplB
           PE=3 SV=1
          Length = 279

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
 Frame = +1

Query: 1   FFQKTSNTDS*ELKSKRKLLYRLPAC*RYSNVG------RHFKSKKT*NIIHC*KQQHNR 162
           F+    N D     S R LL +LPA    +N G      R   +KK   II   + +   
Sbjct: 15  FYTNVENNDITSKPSVRSLLVKLPASAGRNNNGRITSRHREAGAKKLYRIIDFKRDKFGI 74

Query: 163 ESSMNT------QDCRLDLVTYADG 219
             +++T      ++CR+ L+TY DG
Sbjct: 75  AGTVSTVEYDPYRNCRIALITYVDG 99


>sp|Q9H9A7|RMI1_HUMAN RecQ-mediated genome instability protein 1
           OS=Homo sapiens GN=RMI1 PE=1 SV=2
          Length = 625

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 174 HRTLPVVLLFLAMDNVSGFFALEVPSYI*VSSTCWKSVQKL 52
           H  LP  +L +    ++GF+AL++ S + VS   +  +QKL
Sbjct: 66  HPLLPDGILEIPKGELNGFYALQINSLVDVSQPAYSQIQKL 106


>sp|Q94A18|PDR1_ARATH Pleiotropic drug resistance protein 1
           OS=Arabidopsis thaliana GN=PDR1 PE=2 SV=2
          Length = 1416

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -1

Query: 433 DRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNYKYQLERKISN-ARGRHDPWDI 257
           DRK     +    + +  +Q WA   KPY Y +  +++ +++     +N  +    P+D 
Sbjct: 420 DRKGTADFLQEVTSRKDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLSVPYDR 479

Query: 256 FSSIPGKVICSGFHQHKSP 200
           F S P  ++   F +H  P
Sbjct: 480 FKSHPASLV---FKKHSVP 495


>sp|Q7M8D7|RL2_WOLSU 50S ribosomal protein L2 OS=Wolinella
           succinogenes GN=rplB PE=3 SV=1
          Length = 275

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
 Frame = +1

Query: 1   FFQKTSNTDS*ELKSKRKLLYRLPAC*RYSNVGRHFK------SKKT*NIIHC*KQQHNR 162
           F    S++D     S R LL +LP     +N GR         +KK   II   + + N 
Sbjct: 15  FMTGLSSSDITSKPSVRSLLMKLPVTAGRNNNGRITSRHKEGGAKKLYRIIDFKRNKFNI 74

Query: 163 ESSMNT------QDCRLDLVTYADG 219
           E +++       ++CR+ LVTY DG
Sbjct: 75  EGTVSAIEYDPYRNCRIALVTYKDG 99


>sp|Q90029|KITH_RACVI Thymidine kinase OS=Raccoon poxvirus GN=TK
           PE=3 SV=1
          Length = 177

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
 Frame = -1

Query: 346 GYWTTDKYNYKYQLERKISNARGRHDPWDIFSSIPGKVICSGFHQHKSPDLIDSLEYS*N 167
           G WT DK+N+      K+ N       + +     G+           PD+++  EY  N
Sbjct: 49  GLWTHDKHNFSAMETTKLLNIIDAVTDFSVIGIDEGQFF---------PDIVEFCEYMAN 99

Query: 166 SPGCVVVSSNG*CF--RFFCS*SAVLHLS--IFNMLEVCTKAF 50
           +   V+V++    F  + F + S ++ LS  +  +  VC K F
Sbjct: 100 NGKIVIVAALDGTFQRKPFTTISNLIPLSEMVVKLTAVCMKCF 142
tr_hit_id A9RBY6
Definition tr|A9RBY6|A9RBY6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 69
Score (bit) 77.4
E-value 3.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920768|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_C07.
         (454 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RBY6|A9RBY6_PHYPA Predicted protein OS=Physcomitrella paten...    77   3e-13
tr|Q9FYF8|Q9FYF8_ARATH F1N21.17 (At1g67350) (Putative uncharacte...    75   2e-12
tr|Q5YJQ2|Q5YJQ2_HYAOR Putative uncharacterized protein OS=Hyaci...    74   4e-12
tr|Q5YJP9|Q5YJP9_HYAOR At1g67350-like protein OS=Hyacinthus orie...    74   4e-12
tr|A9P8A9|A9P8A9_POPTR Putative uncharacterized protein OS=Popul...    74   5e-12
tr|B6TWW8|B6TWW8_MAIZE Putative uncharacterized protein OS=Zea m...    72   1e-11
tr|B6SI77|B6SI77_MAIZE Putative uncharacterized protein OS=Zea m...    72   1e-11
tr|Q6AVU9|Q6AVU9_ORYSJ Os03g0685900 protein OS=Oryza sativa subs...    70   5e-11
tr|A2XKS7|A2XKS7_ORYSI Putative uncharacterized protein OS=Oryza...    70   5e-11
tr|A7QP62|A7QP62_VITVI Chromosome chr1 scaffold_136, whole genom...    69   1e-10
tr|A5BVR1|A5BVR1_VITVI Putative uncharacterized protein OS=Vitis...    69   1e-10
tr|Q2PXN5|Q2PXN5_ARAHY RW1-like protein (Fragment) OS=Arachis hy...    62   1e-08
tr|A9NN34|A9NN34_PICSI Putative uncharacterized protein OS=Picea...    59   9e-08
tr|Q7CTG8|Q7CTG8_AGRT5 Putative uncharacterized protein OS=Agrob...    37   0.64 
tr|A4S8M2|A4S8M2_OSTLU Predicted protein OS=Ostreococcus lucimar...    34   4.2  
tr|Q935M8|Q935M8_SALTI Putative membrane protein OS=Salmonella t...    33   7.1  
tr|A8R6F7|A8R6F7_SALET Putative membrane protein OS=Salmonella e...    33   7.1  
tr|A8N361|A8N361_COPC7 Putative uncharacterized protein OS=Copri...    33   9.3  
tr|B7QYS0|B7QYS0_9RHOB Citrate (Si)-synthase OS=Ruegeria sp. R11...    33   9.3  

>tr|A9RBY6|A9RBY6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_62174 PE=4 SV=1
          Length = 89

 Score = 77.4 bits (189), Expect = 3e-13
 Identities = 33/69 (47%), Positives = 47/69 (68%)
 Frame = -1

Query: 454 MEDPEVRDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNYKYQLERKISNARGR 275
           ME+P+ RD K R+H+ +TK    K+K+ WA+PVKPYG W TDK N+K+  +  +S   GR
Sbjct: 16  MENPDERDAKFRKHVYSTKEQCVKLKESWANPVKPYGSWNTDKNNHKFLQDLTLSRMPGR 75

Query: 274 HDPWDIFSS 248
            DP++  SS
Sbjct: 76  SDPYEDVSS 84


>tr|Q9FYF8|Q9FYF8_ARATH F1N21.17 (At1g67350) (Putative
           uncharacterized protein) OS=Arabidopsis thaliana PE=4
           SV=1
          Length = 98

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 30/65 (46%), Positives = 45/65 (69%)
 Frame = -1

Query: 454 MEDPEVRDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNYKYQLERKISNARGR 275
           ME+PE RDRK REHI       +K+K+ WA P++PYG+WT +++N + + + +IS   GR
Sbjct: 16  MENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHNAQLRWDPQISQVAGR 75

Query: 274 HDPWD 260
            DP+D
Sbjct: 76  RDPYD 80


>tr|Q5YJQ2|Q5YJQ2_HYAOR Putative uncharacterized protein
           OS=Hyacinthus orientalis PE=4 SV=1
          Length = 91

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 28/65 (43%), Positives = 44/65 (67%)
 Frame = -1

Query: 454 MEDPEVRDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNYKYQLERKISNARGR 275
           MEDP+ RD++ REH+   K   +K K+ W+ P++PYG+WT D++N +   + +IS   GR
Sbjct: 16  MEDPKERDKRAREHVYAIKDQCKKTKEMWSLPIRPYGFWTFDRFNAQLAWDSQISQVPGR 75

Query: 274 HDPWD 260
            DP+D
Sbjct: 76  RDPYD 80


>tr|Q5YJP9|Q5YJP9_HYAOR At1g67350-like protein OS=Hyacinthus
           orientalis PE=4 SV=1
          Length = 91

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 28/65 (43%), Positives = 44/65 (67%)
 Frame = -1

Query: 454 MEDPEVRDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNYKYQLERKISNARGR 275
           MEDP+ RD++ REH+   K   +K K+ W+ P++PYG+WT D++N +   + +IS   GR
Sbjct: 16  MEDPKERDKRAREHVYAIKDQCKKTKEMWSLPIRPYGFWTFDRFNAQLAWDAQISQVPGR 75

Query: 274 HDPWD 260
            DP+D
Sbjct: 76  RDPYD 80


>tr|A9P8A9|A9P8A9_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 91

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 28/65 (43%), Positives = 44/65 (67%)
 Frame = -1

Query: 454 MEDPEVRDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNYKYQLERKISNARGR 275
           MEDP+ RDRK RE +   K   +K K+ W++P++PYG+WT +++N +   + +IS   GR
Sbjct: 16  MEDPKERDRKFRERVYAVKDRCQKTKEMWSYPLRPYGFWTFERHNAQLAWDAQISQVPGR 75

Query: 274 HDPWD 260
            DP+D
Sbjct: 76  RDPYD 80


>tr|B6TWW8|B6TWW8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 93

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 29/65 (44%), Positives = 43/65 (66%)
 Frame = -1

Query: 454 MEDPEVRDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNYKYQLERKISNARGR 275
           MEDP+ RD+  REH+   K   E+ K  W+ P++PYG+WT D++N +   + +IS A GR
Sbjct: 16  MEDPDKRDQVRREHVYKMKERCERTKAAWSLPLRPYGFWTFDRFNSQLSWDPQISQAAGR 75

Query: 274 HDPWD 260
            DP+D
Sbjct: 76  RDPYD 80


>tr|B6SI77|B6SI77_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 93

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 29/65 (44%), Positives = 43/65 (66%)
 Frame = -1

Query: 454 MEDPEVRDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNYKYQLERKISNARGR 275
           MEDP+ RD+  REH+   K   E+ K  W+ P++PYG+WT D++N +   + +IS A GR
Sbjct: 16  MEDPDKRDQVRREHVYKMKERCERTKAAWSLPLRPYGFWTFDRFNSQLSWDPQISQAAGR 75

Query: 274 HDPWD 260
            DP+D
Sbjct: 76  RDPYD 80


>tr|Q6AVU9|Q6AVU9_ORYSJ Os03g0685900 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0024N19.16 PE=4 SV=1
          Length = 94

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 29/65 (44%), Positives = 42/65 (64%)
 Frame = -1

Query: 454 MEDPEVRDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNYKYQLERKISNARGR 275
           MEDP  RD   REH+   K   E+ K  W+ P++PYG+WT D++N +   + +IS+A GR
Sbjct: 16  MEDPGKRDAAQREHVYRMKERCERTKAAWSLPLRPYGFWTFDRFNSQLSWDPQISHAPGR 75

Query: 274 HDPWD 260
            DP+D
Sbjct: 76  RDPYD 80


>tr|A2XKS7|A2XKS7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13066 PE=4 SV=1
          Length = 94

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 29/65 (44%), Positives = 42/65 (64%)
 Frame = -1

Query: 454 MEDPEVRDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNYKYQLERKISNARGR 275
           MEDP  RD   REH+   K   E+ K  W+ P++PYG+WT D++N +   + +IS+A GR
Sbjct: 16  MEDPGKRDAAQREHVYRMKERCERTKAAWSLPLRPYGFWTFDRFNSQLSWDPQISHAPGR 75

Query: 274 HDPWD 260
            DP+D
Sbjct: 76  RDPYD 80


>tr|A7QP62|A7QP62_VITVI Chromosome chr1 scaffold_136, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00002814001
           PE=4 SV=1
          Length = 91

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 26/65 (40%), Positives = 43/65 (66%)
 Frame = -1

Query: 454 MEDPEVRDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNYKYQLERKISNARGR 275
           MEDP+ RDR+ RE +   K   ++ K+ W+ P++PYG+WT +++N +   + +IS   GR
Sbjct: 16  MEDPKERDRRARERLYAVKDRCDRTKEIWSFPIRPYGFWTFERHNSQLAWDPQISQVPGR 75

Query: 274 HDPWD 260
            DP+D
Sbjct: 76  RDPYD 80