NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920771
Clone id YMU001_000141_C12
Library
Length 318
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000141_C12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCATAGAATAAAGCATATCAAGGCTCTCGTGCAGATGCAAATGCAGGATGAGGACTTGGG
GATGTGGTGTACTGTATATTTGACATGCAAGAGGACTGTGCAATCAAGTTAAACTCTTAT
TTATGATGTTGCAGCTCCACGCACAAATACAGAGCCATTCCGCAAGTATGTTGATGGCAA
GACTCGCATTTTTCGTGAACGTGTGGACGGAAAGTCAACTAGCAACATGGATGTGGCGCC
GCGTTGAGGCAGAGCCTGTACAAGAAGGGTCAGGATGCTCAATGCAGATGCATGAGGATA
ATATCAGTCAAGAGAATG
■■Homology search results ■■ -
sp_hit_id Q3ZAV8
Definition sp|Q3ZAV8|EDC4_RAT Enhancer of mRNA-decapping protein 4 OS=Rattus norvegicus
Align length 32
Score (bit) 32.0
E-value 0.98
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920771|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_C12.
         (318 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3ZAV8|EDC4_RAT Enhancer of mRNA-decapping protein 4 OS=Rattu...    32   0.98 
sp|Q3UJB9|EDC4_MOUSE Enhancer of mRNA-decapping protein 4 OS=Mus...    32   0.98 
sp|Q6P2E9|EDC4_HUMAN Enhancer of mRNA-decapping protein 4 OS=Hom...    32   0.98 
sp|Q1LUT1|EDC4_DANRE Enhancer of mRNA-decapping protein 4 OS=Dan...    30   3.7  
sp|Q8PY84|HDRC_METMA CoB--CoM heterodisulfide reductase 1 iron-s...    30   4.8  
sp|O80452|AMPD_ARATH AMP deaminase OS=Arabidopsis thaliana GN=AM...    29   6.3  
sp|Q9P7Z8|YOUD_SCHPO Uncharacterized protein C26H8.13c OS=Schizo...    29   8.3  
sp|Q9NSC7|SIA7A_HUMAN Alpha-N-acetylgalactosaminide alpha-2,6-si...    29   8.3  
sp|B0TX10|RPOB_FRAP2 DNA-directed RNA polymerase subunit beta OS...    29   8.3  
sp|Q1R6K0|KBAY_ECOUT D-tagatose-1,6-bisphosphate aldolase subuni...    29   8.3  
sp|B1LFP2|KBAY_ECOSM D-tagatose-1,6-bisphosphate aldolase subuni...    29   8.3  
sp|Q9KIP8|KBAY_ECOLX D-tagatose-1,6-bisphosphate aldolase subuni...    29   8.3  
sp|P0AB74|KBAY_ECOLI D-tagatose-1,6-bisphosphate aldolase subuni...    29   8.3  
sp|B1IRH9|KBAY_ECOLC D-tagatose-1,6-bisphosphate aldolase subuni...    29   8.3  
sp|P0AB75|KBAY_ECOL6 D-tagatose-1,6-bisphosphate aldolase subuni...    29   8.3  
sp|Q0TCW8|KBAY_ECOL5 D-tagatose-1,6-bisphosphate aldolase subuni...    29   8.3  
sp|A1AG46|KBAY_ECOK1 D-tagatose-1,6-bisphosphate aldolase subuni...    29   8.3  
sp|A8A4V3|KBAY_ECOHS D-tagatose-1,6-bisphosphate aldolase subuni...    29   8.3  
sp|B1XGU9|KBAY_ECODH D-tagatose-1,6-bisphosphate aldolase subuni...    29   8.3  
sp|P0AB76|KBAY_ECO57 D-tagatose-1,6-bisphosphate aldolase subuni...    29   8.3  
sp|A7ZS33|KBAY_ECO24 D-tagatose-1,6-bisphosphate aldolase subuni...    29   8.3  

>sp|Q3ZAV8|EDC4_RAT Enhancer of mRNA-decapping protein 4 OS=Rattus
           norvegicus GN=Edc4 PE=2 SV=1
          Length = 1407

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 44  QDEDLGMWCTVYLTCKRTVQSS*TLIYDVAAP 139
           Q+ +L MWCTV  TC +T++ S  +   V+ P
Sbjct: 376 QNRELKMWCTVSWTCLQTIRFSPDIFSSVSVP 407


>sp|Q3UJB9|EDC4_MOUSE Enhancer of mRNA-decapping protein 4 OS=Mus
           musculus GN=Edc4 PE=1 SV=2
          Length = 1406

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 44  QDEDLGMWCTVYLTCKRTVQSS*TLIYDVAAP 139
           Q+ +L MWCTV  TC +T++ S  +   V+ P
Sbjct: 376 QNRELKMWCTVSWTCLQTIRFSPDIFSSVSVP 407


>sp|Q6P2E9|EDC4_HUMAN Enhancer of mRNA-decapping protein 4 OS=Homo
           sapiens GN=EDC4 PE=1 SV=1
          Length = 1401

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 44  QDEDLGMWCTVYLTCKRTVQSS*TLIYDVAAP 139
           Q+ +L MWCTV  TC +T++ S  +   V+ P
Sbjct: 376 QNRELKMWCTVSWTCLQTIRFSPDIFSSVSVP 407


>sp|Q1LUT1|EDC4_DANRE Enhancer of mRNA-decapping protein 4 OS=Danio
           rerio GN=edc4 PE=2 SV=1
          Length = 1384

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 44  QDEDLGMWCTVYLTCKRTVQSS 109
           Q+++L MWCTV  TC +T++ S
Sbjct: 373 QNQELKMWCTVSWTCLQTIRFS 394


>sp|Q8PY84|HDRC_METMA CoB--CoM heterodisulfide reductase 1
           iron-sulfur subunit C OS=Methanosarcina mazei GN=hdrC
           PE=3 SV=1
          Length = 161

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 265 SCTGSASTRRHIHVAS*LSVHTFTKNASLAINILAEWLCICAWSC 131
           +CTGS  + RH  + +   +    KN +  ++  A WLC   ++C
Sbjct: 24  TCTGSCPSGRHTGLNTRRIIRDARKNRATVLSDDALWLCTTCYTC 68


>sp|O80452|AMPD_ARATH AMP deaminase OS=Arabidopsis thaliana GN=AMPD
           PE=1 SV=2
          Length = 839

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 116 LIYDVAAPRTNTEPFRKYVDGKTRIFRERVDG 211
           +I D + P+ NTEPF  Y  GK+    E  DG
Sbjct: 274 VISDPSTPKPNTEPFAHYPQGKSDHCFEMQDG 305


>sp|Q9P7Z8|YOUD_SCHPO Uncharacterized protein C26H8.13c
           OS=Schizosaccharomyces pombe GN=SPBC26H8.13c PE=2 SV=1
          Length = 124

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 188 CESCHQHTCGMALYLCVELQHHK*EFNLIAQSS 90
           CESC +HTC + +  C     HK E N+ +  S
Sbjct: 76  CESCKKHTCAICIRQC-----HKCESNVCSMCS 103


>sp|Q9NSC7|SIA7A_HUMAN Alpha-N-acetylgalactosaminide
           alpha-2,6-sialyltransferase 1 OS=Homo sapiens
           GN=ST6GALNAC1 PE=1 SV=1
          Length = 600

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +3

Query: 66  GVLYI*HARGLCNQVKLLFMMLQLHAQIQSHSASMLMARLAFFVNVWTESQLATWMWRRV 245
           G L +  A  LC+QV     + + H +   H       RL F++N   + +L   +W+R+
Sbjct: 522 GALLLLTALQLCDQVSAYGFITEGHERFSDHYYDTSWKRLIFYIN--HDFKLEREVWKRL 579

Query: 246 EAEPV 260
             E +
Sbjct: 580 HDEGI 584


>sp|B0TX10|RPOB_FRAP2 DNA-directed RNA polymerase subunit beta
            OS=Francisella philomiragia subsp. philomiragia (strain
            ATCC 25017) GN=rpoB PE=3 SV=1
          Length = 1358

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 170  VDGKTRIFRERVDGKSTSNMDVAPR*GRACTRRVRMLNADA*G*YQSRE 316
            + G++++++  VDGK T N+DV P         VR L  D    Y S E
Sbjct: 1310 ITGRSKMYKNIVDGKLTMNVDV-PESFNVLRNEVRALGIDMDFDYSSEE 1357


>sp|Q1R6K0|KBAY_ECOUT D-tagatose-1,6-bisphosphate aldolase subunit
           kbaY OS=Escherichia coli (strain UTI89 / UPEC) GN=kbaY
           PE=3 SV=1
          Length = 286

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 85  CQIYSTPHPQVLILHLHLHESLD 17
           C  YST +   L LHL  HESLD
Sbjct: 66  CSAYSTTYNMPLALHLDHHESLD 88
tr_hit_id Q06BE2
Definition tr|Q06BE2|Q06BE2_LYTVA Smoothened OS=Lytechinus variegatus
Align length 42
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920771|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_C12.
         (318 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q06BE2|Q06BE2_LYTVA Smoothened OS=Lytechinus variegatus PE=2 ...    35   1.4  
tr|B6LNQ8|B6LNQ8_BRAFL Putative uncharacterized protein OS=Branc...    33   7.1  
tr|B4N4R6|B4N4R6_DROWI GK12548 OS=Drosophila willistoni GN=GK125...    33   7.1  
tr|B4H6T3|B4H6T3_DROPE GL21959 OS=Drosophila persimilis GN=GL219...    33   7.1  
tr|B2B865|B2B865_PODAN Predicted CDS Pa_2_13470 OS=Podospora ans...    33   9.2  
tr|Q29DJ2|Q29DJ2_DROPS GA14810 OS=Drosophila pseudoobscura pseud...    33   9.3  

>tr|Q06BE2|Q06BE2_LYTVA Smoothened OS=Lytechinus variegatus PE=2
           SV=2
          Length = 815

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 147 IQSHSASMLMARLAFFVNVWTESQLATW--MWRRVEAEPVQE 266
           +  H  SM  A +A  + VWT + LA W  MWR+V  +P+ E
Sbjct: 501 VMVHLFSMFGAGIAMSMWVWTPATLAIWKRMWRKVTRQPINE 542


>tr|B6LNQ8|B6LNQ8_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_120157 PE=4 SV=1
          Length = 404

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 13/73 (17%)
 Frame = -2

Query: 206 PHVHEKCESCHQ--------HTCG----MALYLCVELQHHK*EFNLIA-QSSCMSNIQYT 66
           PHV +   SC Q        H CG     A     ++Q H  + N I   +SC+S   YT
Sbjct: 165 PHVQDLGNSCDQQQGTVGGGHQCGNPEKRATNSRQKVQSHLQDSNFITYDNSCLS---YT 221

Query: 65  TSPSPHPAFASAR 27
           T P  HPAF   R
Sbjct: 222 TPPLTHPAFQGRR 234


>tr|B4N4R6|B4N4R6_DROWI GK12548 OS=Drosophila willistoni GN=GK12548
           PE=4 SV=1
          Length = 534

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -2

Query: 191 KCESCHQHTCGMALYLCVELQHHK*EFNLIAQSSCMSNIQY 69
           KC SC    CG     C +  HH+ E  L+AQS+  S I Y
Sbjct: 108 KCSSCTWPLCGKE---CEQSPHHRGECQLMAQSNFQSKINY 145


>tr|B4H6T3|B4H6T3_DROPE GL21959 OS=Drosophila persimilis GN=GL21959
           PE=4 SV=1
          Length = 532

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -2

Query: 191 KCESCHQHTCGMALYLCVELQHHK*EFNLIAQSSCMSNIQYT 66
           KC SC    CG     C E  HH+ E  L++ S+  S I YT
Sbjct: 109 KCSSCSWPLCGRE---CEESSHHRAECQLMSGSNFQSKINYT 147


>tr|B2B865|B2B865_PODAN Predicted CDS Pa_2_13470 OS=Podospora
           anserina PE=4 SV=1
          Length = 393

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -1

Query: 297 PHASALSILTLLVQALPQRGATSMLLVDFPSTRSRKMRVLPSTYLRNGSVFVRG 136
           PH    ++LT L+  +   G T   L+D PS ++   R L    + N  V++ G
Sbjct: 3   PHRLTSALLTSLLATILTAGTTDAALLDVPSPKNYVRRALARATVLNNHVYIEG 56


>tr|Q29DJ2|Q29DJ2_DROPS GA14810 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA14810 PE=4 SV=2
          Length = 532

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -2

Query: 191 KCESCHQHTCGMALYLCVELQHHK*EFNLIAQSSCMSNIQYT 66
           KC SC    CG     C E  HH+ E  L++ S+  S I YT
Sbjct: 109 KCSSCSWPLCGRE---CEESPHHRAECQLMSGSNFQSKINYT 147