NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920772
Clone id YMU001_000141_D01
Library
Length 460
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000141_D01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTGAAACTCGTTTAATGCTTTGAAATATAATGTCATCATTATACATATCAGGAGATGA
GCGCCCACAAAAAGCTGATGGATTGCTCTTGGGCTCTCTCTAATCATATGTGAATATGCA
TCTTGTGAGATCCGCAATTACACAGATGTACTCAAATCTGTAAAGGAACACTCTGCCTTG
TATTATGATGCAAAGATAGTCCAGCCCTGTTCAGCATCATCTCCATCATTGATAGTTGAC
TGAGGCATAAGAGTCACTCAATCAAAGAAGCTGCGCTCTTTCGACTCTATCTACCAAGTT
ACAAATCTGCAAATACACAAAAGAATTGCACCTCAAACATAGGCTTCTTCAATCACCTCA
ACATTACTGCATCTCATTGTGGTCTGTATATATTTCACACTCCGAGACACCTGCATAAAG
TCGTATGCATATTATCCGTTCTGCCTTGTGCTCTCAATAT
■■Homology search results ■■ -
sp_hit_id Q98199
Definition sp|Q98199|PAP1_MCV1 Poly(A) polymerase catalytic subunit OS=Molluscum contagiosum virus subtype 1
Align length 114
Score (bit) 32.7
E-value 0.77
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920772|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_D01.
         (460 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q98199|PAP1_MCV1 Poly(A) polymerase catalytic subunit OS=Moll...    33   0.77 
sp|Q46HB8|LEUC_PROMT 3-isopropylmalate dehydratase large subunit...    31   2.9  
sp|A2C088|LEUC_PROM1 3-isopropylmalate dehydratase large subunit...    31   2.9  
sp|P04540|NU5M_TRYBB NADH-ubiquinone oxidoreductase chain 5 OS=T...    30   3.8  
sp|P34367|YLJ2_CAEEL Uncharacterized protein C50C3.2 OS=Caenorha...    30   6.5  
sp|Q7VDT0|LEUC_PROMA 3-isopropylmalate dehydratase large subunit...    30   6.6  
sp|Q6FIK2|YME2_CANGA Mitochondrial escape protein 2 OS=Candida g...    29   8.6  

>sp|Q98199|PAP1_MCV1 Poly(A) polymerase catalytic subunit
           OS=Molluscum contagiosum virus subtype 1 GN=PAPL PE=3
           SV=1
          Length = 470

 Score = 32.7 bits (73), Expect = 0.77
 Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
 Frame = +1

Query: 127 EIRNYTDVLKSVKEHSALYYDAKIVQPCSASSPSLIVD*GIRVTQSKK---LRSFDSIYQ 297
           E R Y D  + +++ S L  DA +V   + S+   ++  GI  T       LRS D+I+ 
Sbjct: 346 ECRCYLDEARLLQDISKLNADAAVVDFEAVSNSVFLIHQGIMYTYFSNTVLLRSEDAIHD 405

Query: 298 VTNLQIHKRIAPQT*ASSITSTLLHLIVVCIYFTLRDTCIKSYAYYPFCLVLSI 459
           V+   +   I           TL HL+V C Y  L    + S      C V+ +
Sbjct: 406 VSERAVCAHI-----------TLYHLLVGCNYQELLADLLNSLVSREKCPVVGV 448


>sp|Q46HB8|LEUC_PROMT 3-isopropylmalate dehydratase large subunit
           OS=Prochlorococcus marinus (strain NATL2A) GN=leuC PE=3
           SV=1
          Length = 469

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 110 HMIRESPRAIHQLFVGAHLLICIMMTLYFKALNE 9
           H ++E P    QLF+G HL+  +     F ALNE
Sbjct: 14  HQVKELPGGSTQLFIGLHLIHEVTSPQAFSALNE 47


>sp|A2C088|LEUC_PROM1 3-isopropylmalate dehydratase large subunit
           OS=Prochlorococcus marinus (strain NATL1A) GN=leuC PE=3
           SV=1
          Length = 469

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 110 HMIRESPRAIHQLFVGAHLLICIMMTLYFKALNE 9
           H ++E P    QLF+G HL+  +     F ALNE
Sbjct: 14  HQVKELPGGSTQLFIGLHLIHEVTSPQAFSALNE 47


>sp|P04540|NU5M_TRYBB NADH-ubiquinone oxidoreductase chain 5
           OS=Trypanosoma brucei brucei GN=ND5 PE=3 SV=1
          Length = 590

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 352 ITSTLLHLIVVCIYFT--LRDTCIKSYAYYPFCLVLSI 459
           ++  ++  IV+C+ F+  +   C+  Y YY FCL+L +
Sbjct: 30  LSLVMIIFIVLCMIFSFLMVSVCLYGYYYYDFCLILML 67


>sp|P34367|YLJ2_CAEEL Uncharacterized protein C50C3.2
            OS=Caenorhabditis elegans GN=C50C3.2/C50C3.3 PE=2 SV=2
          Length = 2107

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 106  ICEYASCEIRNYTDVLKSVKEHSALYYDAKI 198
            ICE A+C ++ Y +V+  VK+   + Y  K+
Sbjct: 1864 ICEQAACTLKTYHNVIVDVKKELEILYSLKL 1894


>sp|Q7VDT0|LEUC_PROMA 3-isopropylmalate dehydratase large subunit
           OS=Prochlorococcus marinus GN=leuC PE=3 SV=1
          Length = 468

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 110 HMIRESPRAIHQLFVGAHLLICIMMTLYFKALNE 9
           H + E P    QLFVG HL+  +     F ALNE
Sbjct: 14  HRVAEIPGGSTQLFVGLHLIHEVTSPQAFSALNE 47


>sp|Q6FIK2|YME2_CANGA Mitochondrial escape protein 2 OS=Candida
           glabrata GN=YME2 PE=3 SV=1
          Length = 848

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
 Frame = +3

Query: 279 FRLYLPSYKSANTQKNCTSNIGFFN---HL---NITASHC--GLYIFHTPRHLHKVVCIL 434
           FR+   SY+ A   KNC S I   N   HL   N+   H     Y+ HT   +     +L
Sbjct: 235 FRVKYRSYRGAICAKNCVSGIEIHNTVLHLQYENVVKGHLIRNFYVTHTRIAIPVTFALL 294

Query: 435 SVL 443
           S+L
Sbjct: 295 SIL 297
tr_hit_id Q0FAY3
Definition tr|Q0FAY3|Q0FAY3_9RHOB Hydrolase, TatD family protein OS=Rhodobacterales bacterium HTCC2255
Align length 83
Score (bit) 32.7
E-value 9.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920772|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_D01.
         (460 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0FAY3|Q0FAY3_9RHOB Hydrolase, TatD family protein OS=Rhodoba...    33   9.2  
tr|B7EIJ4|B7EIJ4_ORYSJ cDNA clone:J023064A19, full insert sequen...    33   9.2  
tr|A3BAT1|A3BAT1_ORYSJ Putative uncharacterized protein OS=Oryza...    33   9.2  

>tr|Q0FAY3|Q0FAY3_9RHOB Hydrolase, TatD family protein
           OS=Rhodobacterales bacterium HTCC2255 GN=OM2255_02812
           PE=4 SV=1
          Length = 262

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
 Frame = +1

Query: 127 EIRNYTDVLKSVKEHSALYYDAKIVQPCSASSPSLIVD*GIRVTQSKKL-----RSFDSI 291
           +++N   V K  +EH A+YY A      +AS P   VD  I ++Q  K+        D  
Sbjct: 43  KLKNEPSVRKIAEEHEAVYYAAGTHPMSAASEPLASVDQLIEISQHPKMVGIGETGLDYH 102

Query: 292 Y-------QVTNLQIHKRIAPQT 339
           Y       Q T+L+IH   A +T
Sbjct: 103 YTAESAEIQKTSLKIHIEAARET 125


>tr|B7EIJ4|B7EIJ4_ORYSJ cDNA clone:J023064A19, full insert sequence
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 307

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 321 KNCTSNIGFFNHLNITASHCGLYIFHTPRHLHKV 422
           +N  SNIG F HL   +   G YI+H PR + K+
Sbjct: 179 QNDISNIGSFCHLRYLSVKKGSYIYHIPRSIRKL 212


>tr|A3BAT1|A3BAT1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_020153 PE=4 SV=1
          Length = 926

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 321 KNCTSNIGFFNHLNITASHCGLYIFHTPRHLHKV 422
           +N  SNIG F HL   +   G YI+H PR + K+
Sbjct: 540 QNDISNIGSFCHLRYLSVKKGSYIYHIPRSIRKL 573