NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920781
Clone id YMU001_000141_E03
Library
Length 312
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000141_E03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGCCTGTAGGGTGCTCTTTCTGAATCTTGGAAGTTGATAAATCTTCTTCTTCCACATACA
CACTCACACACACATACATACATACACACACATGAGCGTTCCTATTGAAGTGCTCTTTAC
CTTCTCGTGTAGCCTATCTGACTGGCTGCGTGTCTTCTTGACTCCAATAATCCATCCTTG
TAACATTGGCTTCTTCTCGATTTTCTCGAATACTGAAGGTTGGGCTGTCTATCGTCTCCT
TGAAACATCTGAATCTTCTTCCTGTTCTTGAATACCTCGGGTTTCGCTATGCAGACGCCT
TTGCATTGCAAT
■■Homology search results ■■ -
sp_hit_id Q5D7I6
Definition sp|Q5D7I6|TRIM5_ALOSA Tripartite motif-containing protein 5 OS=Alouatta sara
Align length 41
Score (bit) 32.3
E-value 0.75
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920781|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_E03.
         (312 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5D7I6|TRIM5_ALOSA Tripartite motif-containing protein 5 OS=A...    32   0.75 
sp|Q49WL3|RNJ1_STAS1 Ribonuclease J 1 OS=Staphylococcus saprophy...    30   4.9  
sp|O13839|FIN1_SCHPO G2-specific protein kinase fin1 OS=Schizosa...    29   8.3  
sp|Q1RI01|AMPG4_RICBR Putative transporter ampG 4 OS=Rickettsia ...    29   8.3  

>sp|Q5D7I6|TRIM5_ALOSA Tripartite motif-containing protein 5
           OS=Alouatta sara GN=TRIM5 PE=3 SV=1
          Length = 551

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -2

Query: 302 KGVCIAKPEVFKNRKKIQMFQGDDRQPNLQYSRKSRRSQCY 180
           K V + KPE F N K+ ++FQ  D +  LQ  ++ +  QCY
Sbjct: 255 KNVTLQKPETFLNEKR-RVFQAPDLKGMLQVFKELKEVQCY 294


>sp|Q49WL3|RNJ1_STAS1 Ribonuclease J 1 OS=Staphylococcus
           saprophyticus subsp. saprophyticus (strain ATCC 15305 /
           DSM 20229) GN=SSP1701 PE=3 SV=1
          Length = 620

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = -1

Query: 303 QRRLHSETRGIQEQEEDSDVSRRR*----TAQPSVFEKIEKKPMLQGWIIGVKKTRSQSD 136
           QRR+ ++  G   Q +D    + +     T QP +FEK  +KPM+   I+ V +  +Q+ 
Sbjct: 505 QRRIKTDVIGKLNQNQDIQWHQIKSSIIETLQPYLFEKTARKPMILPVIMKVNEDNNQTS 564

Query: 135 RLHEKVKST 109
                 K+T
Sbjct: 565 TKKPSNKNT 573


>sp|O13839|FIN1_SCHPO G2-specific protein kinase fin1
           OS=Schizosaccharomyces pombe GN=fin1 PE=2 SV=1
          Length = 722

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = -2

Query: 275 VFKNRKKIQMFQGDDRQPNLQYSR----KSRRSQCYKDGLLESRRHAASQIGYT 126
           V +  KKIQ+ +G  R P  Q  R    K RRS     GL    R AAS   YT
Sbjct: 637 VLRTPKKIQLLEGQKRSPVKQLGRLGYNKLRRSAMDNAGL--ELRKAASTSNYT 688


>sp|Q1RI01|AMPG4_RICBR Putative transporter ampG 4 OS=Rickettsia
           bellii (strain RML369-C) GN=ampG4 PE=3 SV=1
          Length = 414

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 98  VPIEVLFTFSCS-LSDWLRVFLTPIIHPCNIGFFSIFSNTEGWAV 229
           V I V+ TF  + LS  L+VF +P+I    + F S + + +GW +
Sbjct: 42  VDIAVITTFGIAKLSYSLKVFWSPLIDNFKVPFLSRWGHRKGWLI 86
tr_hit_id Q6CBH0
Definition tr|Q6CBH0|Q6CBH0_YARLI YALI0C18821p OS=Yarrowia lipolytica
Align length 73
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920781|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_E03.
         (312 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6CBH0|Q6CBH0_YARLI YALI0C18821p OS=Yarrowia lipolytica GN=YA...    34   3.2  
tr|Q2R0H0|Q2R0H0_ORYSJ NB-ARC domain containing protein OS=Oryza...    34   4.2  
tr|Q2R0F1|Q2R0F1_ORYSJ NB-ARC domain containing protein OS=Oryza...    34   4.2  
tr|A3CDB0|A3CDB0_ORYSJ Putative uncharacterized protein OS=Oryza...    34   4.2  
tr|A3BXK0|A3BXK0_ORYSJ Putative uncharacterized protein OS=Oryza...    33   9.3  

>tr|Q6CBH0|Q6CBH0_YARLI YALI0C18821p OS=Yarrowia lipolytica
           GN=YALI0C18821g PE=4 SV=1
          Length = 599

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/73 (26%), Positives = 38/73 (52%)
 Frame = -1

Query: 312 IAMQRRLHSETRGIQEQEEDSDVSRRR*TAQPSVFEKIEKKPMLQGWIIGVKKTRSQSDR 133
           + +Q++L  E   I E + DS  SR+   ++   F+K+E    L+G    +K  + + DR
Sbjct: 18  LGLQKQLDKEGETIVEAQTDSVASRKELASKTRDFKKLEDNDKLEGIKTLLKAYQGEIDR 77

Query: 132 LHEKVKSTSIGTL 94
           L ++ +++    L
Sbjct: 78  LTQRARNSETAFL 90


>tr|Q2R0H0|Q2R0H0_ORYSJ NB-ARC domain containing protein OS=Oryza
            sativa subsp. japonica GN=LOC_Os11g42580 PE=4 SV=1
          Length = 1444

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
 Frame = +3

Query: 147  CVSS*LQ*SILVTLASSRFSRILKVGLSIVSLKHLNL-----LPVLEYLGFR 287
            C+    Q   L+TL + RF++++KV LS  SLK  NL     LP L Y+ FR
Sbjct: 1061 CLQGTTQKGELLTLLAERFTKLVKVTLSWTSLKQKNLEGLGDLPNLCYVRFR 1112


>tr|Q2R0F1|Q2R0F1_ORYSJ NB-ARC domain containing protein OS=Oryza
            sativa subsp. japonica GN=LOC_Os11g42770 PE=4 SV=1
          Length = 1335

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
 Frame = +3

Query: 147  CVSS*LQ*SILVTLASSRFSRILKVGLSIVSLKHLNL-----LPVLEYLGFR 287
            C+    Q   L+TL + RF++++KV LS  SLK  NL     LP L Y+ FR
Sbjct: 953  CLQGTTQKGELLTLLAERFTKLVKVTLSWTSLKQKNLEGLGDLPNLCYVRFR 1004


>tr|A3CDB0|A3CDB0_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_033282 PE=4 SV=1
          Length = 1263

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
 Frame = +3

Query: 147  CVSS*LQ*SILVTLASSRFSRILKVGLSIVSLKHLNL-----LPVLEYLGFR 287
            C+    Q   L+TL + RF++++KV LS  SLK  NL     LP L Y+ FR
Sbjct: 1061 CLQGTTQKGELLTLLAERFTKLVKVTLSWTSLKQKNLEGLGDLPNLCYVRFR 1112


>tr|A3BXK0|A3BXK0_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_027772 PE=4 SV=1
          Length = 1336

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 5/42 (11%)
 Frame = +3

Query: 177  LVTLASSRFSRILKVGLSIVSLKHLNL-----LPVLEYLGFR 287
            L+TL + RF++++KV LS  SLK  NL     LP L Y+ FR
Sbjct: 963  LLTLLAERFTKLVKVTLSWTSLKQKNLEGLGDLPNLCYVRFR 1004