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NBDC - LSDB Archive
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BP920785
Clone id YMU001_000141_E09
Library
Length 444
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000141_E09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGGCCGTCGACGTACTCCAAGGATCAGTCCATTGAAAATAACTAGATAAACTTTAAAAGA
ATTGATTTCATCTCCAGATAGCATGCTCAGCTCTTCAACTCCCAGTGTAGTACACAGATT
TATCAAAGGCCCTTCTTCCTCATCTGTTGTCACATGTGTCATAAGGGCTAGATTCTTGGT
AAGGCCGCAAGCTTCCCCTTCTGGTGTATCACATGGGCAAAGCATTCCCCACTGACTTGG
TTGAAGTGCTCTTGGTCCACTAACTTTCCGAGTTTTCTCAAATTGTGATGATATGCGGGT
CATGTGTCCTAAGGCTGCAATAAAGGAGAGCCTGGAAACAACCTGAGTTACACCTTTTCG
TTCCATCCTAAACCTTTTAACAGTCCAATTACCGCTTGAGATTGCATGCTCCAAACCTTG
CGACAACATATCAGGTCTAATAAC
■■Homology search results ■■ -
sp_hit_id Q9NW08
Definition sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens
Align length 145
Score (bit) 210.0
E-value 2.0e-54
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920785|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_E09.
         (444 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC...   210   2e-54
sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC...   209   3e-54
sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC...   199   3e-51
sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC...   199   6e-51
sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC...   184   1e-46
sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc...   138   9e-33
sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2...   119   6e-27
sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2...   113   4e-25
sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2...   110   2e-24
sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2...   109   5e-24
sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2...   107   2e-23
sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2...   106   4e-23
sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2...   105   9e-23
sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2...   105   1e-22
sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2...   105   1e-22
sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2...    99   1e-20
sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2...    99   1e-20
sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2...    98   1e-20
sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2...    98   2e-20
sp|P41558|RPOB2_METVS DNA-directed RNA polymerase subunit B'' OS...    96   7e-20
sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Th...    94   2e-19
sp|Q03587|RPOB_THEAC DNA-directed RNA polymerase subunit B OS=Th...    89   6e-18
sp|P15352|RPOB2_HALSA DNA-directed RNA polymerase subunit B'' OS...    88   1e-17
sp|P09844|RPOB2_METTW DNA-directed RNA polymerase subunit B'' OS...    88   2e-17
sp|O27123|RPOB2_METTH DNA-directed RNA polymerase subunit B'' OS...    86   9e-17
sp|Q58444|RPOB2_METJA DNA-directed RNA polymerase subunit B'' OS...    85   2e-16
sp|P11513|RPOB_SULAC DNA-directed RNA polymerase subunit B OS=Su...    82   1e-15
sp|Q7T6X7|RPO2_MIMIV DNA-directed RNA polymerase subunit 2 OS=Ac...    73   5e-13
sp|O74633|RPA2_NEUCR DNA-directed RNA polymerase I subunit RPA2 ...    60   3e-09
sp|Q54BM1|RPA2_DICDI DNA-directed RNA polymerase I subunit rpa2 ...    57   3e-08

>sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC2
           OS=Homo sapiens GN=POLR3B PE=1 SV=2
          Length = 1133

 Score =  210 bits (535), Expect = 2e-54
 Identities = 98/145 (67%), Positives = 126/145 (86%)
 Frame = -1

Query: 441 IRPDMLSQGLEHAISSGNWTVKRFRMERKGVTQVVSRLSFIAALGHMTRISSQFEKTRKV 262
           +R D ++ G+ +AIS+GNW++KRF+M+R+GVTQV+SRLS+I+ALG MTRISSQFEKTRKV
Sbjct: 406 MRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKV 465

Query: 261 SGPRALQPSQWGMLCPCDTPEGEACGLTKNLALMTHVTTDEEEGPLINLCTTLGVEELSM 82
           SGPR+LQPSQWGMLCP DTPEGEACGL KNLALMTH+TTD E+GP++ L + LGVE++++
Sbjct: 466 SGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNL 525

Query: 81  LSGDEINSFKVYLVIFNGLILGVRR 7
           L G+E++   V+LV  NG ILGV R
Sbjct: 526 LCGEELSYPNVFLVFLNGNILGVIR 550


>sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC2
           OS=Mus musculus GN=Polr3b PE=2 SV=2
          Length = 1133

 Score =  209 bits (533), Expect = 3e-54
 Identities = 99/145 (68%), Positives = 125/145 (86%)
 Frame = -1

Query: 441 IRPDMLSQGLEHAISSGNWTVKRFRMERKGVTQVVSRLSFIAALGHMTRISSQFEKTRKV 262
           +R D ++ G+ +AIS+GNW++KRF+M+R+GVTQV+SRLS+I+ALG MTRISSQFEKTRKV
Sbjct: 406 MRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKV 465

Query: 261 SGPRALQPSQWGMLCPCDTPEGEACGLTKNLALMTHVTTDEEEGPLINLCTTLGVEELSM 82
           SGPR+LQPSQWGMLCP DTPEGEACGL KNLALMTH+TTD E+GP+I L   LGVE++++
Sbjct: 466 SGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNL 525

Query: 81  LSGDEINSFKVYLVIFNGLILGVRR 7
           L G+E++   V+LV  NG ILGV R
Sbjct: 526 LCGEELSYPNVFLVFLNGNILGVIR 550


>sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC2
           OS=Drosophila melanogaster GN=RpIII128 PE=1 SV=2
          Length = 1137

 Score =  199 bits (507), Expect = 3e-51
 Identities = 95/143 (66%), Positives = 119/143 (83%)
 Frame = -1

Query: 441 IRPDMLSQGLEHAISSGNWTVKRFRMERKGVTQVVSRLSFIAALGHMTRISSQFEKTRKV 262
           +R   ++ GLE AISSGNWT+KRF+MER GVTQV+SRLS+I+ALG MTR++SQFEKTRKV
Sbjct: 413 MRAAQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKV 472

Query: 261 SGPRALQPSQWGMLCPCDTPEGEACGLTKNLALMTHVTTDEEEGPLINLCTTLGVEELSM 82
           SGPR+LQPSQWGMLCP DTPEGEACGL KNLALMTH+TT+ EE P++ +    GVE++  
Sbjct: 473 SGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVEDIRE 532

Query: 81  LSGDEINSFKVYLVIFNGLILGV 13
           +SG+ IN+  V+LV  NG +LG+
Sbjct: 533 VSGNPINNPNVFLVFINGNVLGL 555


>sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC2
           OS=Schizosaccharomyces pombe GN=rpc2 PE=2 SV=1
          Length = 1165

 Score =  199 bits (505), Expect = 6e-51
 Identities = 94/147 (63%), Positives = 119/147 (80%)
 Frame = -1

Query: 441 IRPDMLSQGLEHAISSGNWTVKRFRMERKGVTQVVSRLSFIAALGHMTRISSQFEKTRKV 262
           +  D ++QG+  A+S+GNW++KRF+MER GVT V+SRLS+I+ALG MTRI+SQFEKTRKV
Sbjct: 435 VHSDHITQGMVRALSTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRITSQFEKTRKV 494

Query: 261 SGPRALQPSQWGMLCPCDTPEGEACGLTKNLALMTHVTTDEEEGPLINLCTTLGVEELSM 82
           SGPR+LQ SQ+GMLC  DTPEGEACGL KNLALMTH+TTDEEE P+I L    G+E++ +
Sbjct: 495 SGPRSLQASQFGMLCTSDTPEGEACGLVKNLALMTHITTDEEEEPIIKLAYAFGIEDIHV 554

Query: 81  LSGDEINSFKVYLVIFNGLILGVRRRP 1
           +SG E++S   YLV  NG ILG+ R P
Sbjct: 555 ISGRELHSHGTYLVYLNGAILGISRYP 581


>sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC2
           OS=Saccharomyces cerevisiae GN=RET1 PE=1 SV=2
          Length = 1149

 Score =  184 bits (468), Expect = 1e-46
 Identities = 91/148 (61%), Positives = 118/148 (79%), Gaps = 1/148 (0%)
 Frame = -1

Query: 441 IRPDMLSQGLEHAISSGNWTVKRFRMERKGVTQVVSRLSFIAALGHMTRISSQFEKTRKV 262
           +  + ++ GL  AIS+GNW++KRF+MER GVT V+SRLS+I+ALG MTRISSQFEK+RKV
Sbjct: 424 VHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKV 483

Query: 261 SGPRALQPSQWGMLCPCDTPEGEACGLTKNLALMTHVTTDEEEGPLINLCTTLGVEELSM 82
           SGPRALQPSQ+GMLC  DTPEGEACGL KNLALMTH+TTD+EE P+  LC  LGVE++++
Sbjct: 484 SGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDITL 543

Query: 81  LSGDEIN-SFKVYLVIFNGLILGVRRRP 1
           +    ++ ++ VYL   NG ++G  R P
Sbjct: 544 IDSASLHLNYGVYL---NGTLIGSIRFP 568


>sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc2
           OS=Dictyostelium discoideum GN=polr3b PE=3 SV=1
          Length = 1608

 Score =  138 bits (348), Expect = 9e-33
 Identities = 63/86 (73%), Positives = 74/86 (86%)
 Frame = -1

Query: 444 VIRPDMLSQGLEHAISSGNWTVKRFRMERKGVTQVVSRLSFIAALGHMTRISSQFEKTRK 265
           +IR D ++ G  HAISSG W +KRFRMER GV+QV+SRLS+I+ +G MTRI SQFEKTRK
Sbjct: 421 LIRTDTITNGFTHAISSGQWNLKRFRMERSGVSQVLSRLSYISCMGMMTRIQSQFEKTRK 480

Query: 264 VSGPRALQPSQWGMLCPCDTPEGEAC 187
           V+GPR+LQPSQWGMLCP DTPEGEAC
Sbjct: 481 VAGPRSLQPSQWGMLCPSDTPEGEAC 506



 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 33/63 (52%), Positives = 47/63 (74%)
 Frame = -1

Query: 189  CGLTKNLALMTHVTTDEEEGPLINLCTTLGVEELSMLSGDEINSFKVYLVIFNGLILGVR 10
            CGL KN ALM+HVTTD+ EGPL+ L   LGV+++ +++G+E+NS   YLV+ NG I+G+ 
Sbjct: 970  CGLVKNFALMSHVTTDDSEGPLLRLAYNLGVQDILLVTGEELNSRNAYLVLLNGQIIGIH 1029

Query: 9    RRP 1
              P
Sbjct: 1030 NSP 1032


>sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2
           OS=Encephalitozoon cuniculi GN=RPB2 PE=3 SV=1
          Length = 1141

 Score =  119 bits (298), Expect = 6e-27
 Identities = 53/148 (35%), Positives = 93/148 (62%), Gaps = 1/148 (0%)
 Frame = -1

Query: 441 IRPDMLSQGLEHAISSGNWTVKRFRME-RKGVTQVVSRLSFIAALGHMTRISSQFEKTRK 265
           ++  +++QG  +A+++GNW  +   M+ R GV QV++R +F++ L H+ R+++  EK  K
Sbjct: 407 LKASIITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGK 466

Query: 264 VSGPRALQPSQWGMLCPCDTPEGEACGLTKNLALMTHVTTDEEEGPLINLCTTLGVEELS 85
           ++ PR L  + WGM+CP +TPEG+ACGL KNL+LM +++     GPL+      GVE L 
Sbjct: 467 LAAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLEECGVESLE 526

Query: 84  MLSGDEINSFKVYLVIFNGLILGVRRRP 1
            +S  ++++     +  NG+ +G+   P
Sbjct: 527 EISTSQLDA--ATKIFVNGVWVGIHSDP 552


>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2
           OS=Arabidopsis thaliana GN=RPB135 PE=2 SV=2
          Length = 1188

 Score =  113 bits (282), Expect = 4e-25
 Identities = 55/148 (37%), Positives = 90/148 (60%), Gaps = 1/148 (0%)
 Frame = -1

Query: 441 IRPDMLSQGLEHAISSGNWTVKRFRMERKGVTQVVSRLSFIAALGHMTRISSQFEKTRKV 262
           I+   ++ GL++++++GNW        R GV+QV++RL++ + L H+ R++S   +  K+
Sbjct: 440 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 499

Query: 261 SGPRALQPSQWGMLCPCDTPEGEACGLTKNLALMTHVTTDEEEGPLINLCTTLGVEELSM 82
           + PR L  SQWGM+CP +TPEG+ACGL KNLALM ++T      P++      G E    
Sbjct: 500 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 559

Query: 81  LSGDEI-NSFKVYLVIFNGLILGVRRRP 1
           +S   I  + K+++   NG+ +GV R P
Sbjct: 560 ISPSVIPQATKIFV---NGMWVGVHRDP 584


>sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2
           OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1
          Length = 1191

 Score =  110 bits (276), Expect = 2e-24
 Identities = 54/148 (36%), Positives = 89/148 (60%), Gaps = 1/148 (0%)
 Frame = -1

Query: 441 IRPDMLSQGLEHAISSGNWTVKRFRMERKGVTQVVSRLSFIAALGHMTRISSQFEKTRKV 262
           I+   ++ GL++++++GNW        R GV+QV++RL++ + L H+ R++S   +  K+
Sbjct: 439 IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 498

Query: 261 SGPRALQPSQWGMLCPCDTPEGEACGLTKNLALMTHVTTDEEEGPLINLCTTLGVEELSM 82
           + PR L  SQWGM+CP +TPEG+ACGL KNLALM ++T      P++      G E    
Sbjct: 499 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 558

Query: 81  LSGDEI-NSFKVYLVIFNGLILGVRRRP 1
           +S   I  + K+++   NG  +G+ R P
Sbjct: 559 ISPAVIPQATKIFV---NGTWVGIHRDP 583


>sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2
           OS=Schizosaccharomyces pombe GN=rpb2 PE=2 SV=2
          Length = 1210

 Score =  109 bits (273), Expect = 5e-24
 Identities = 55/149 (36%), Positives = 93/149 (62%), Gaps = 2/149 (1%)
 Frame = -1

Query: 441 IRPDMLSQGLEHAISSGNW-TVKRFRMERKGVTQVVSRLSFIAALGHMTRISSQFEKTRK 265
           ++ ++++ GL +++++GNW   KR  + R GV+QV++R +F + L H+ R ++   +  K
Sbjct: 434 VKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNTPIGRDGK 493

Query: 264 VSGPRALQPSQWGMLCPCDTPEGEACGLTKNLALMTHVTTDEEEGPLINLCTTLGVEELS 85
           ++ PR L  + WGM+CP +TPEG+ACGL KNL+LM++V+      P+I      G+E L 
Sbjct: 494 LAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEEWGLETLE 553

Query: 84  MLS-GDEINSFKVYLVIFNGLILGVRRRP 1
             +     N+ KV++   NG+ LGV R P
Sbjct: 554 DYNPSASPNATKVFV---NGVWLGVHRDP 579
tr_hit_id A9RNX6
Definition tr|A9RNX6|A9RNX6_PHYPA DNA-directed RNA polymerase OS=Physcomitrella patens subsp. patens
Align length 148
Score (bit) 263.0
E-value 2.0e-69
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920785|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_E09.
         (444 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RNX6|A9RNX6_PHYPA DNA-directed RNA polymerase OS=Physcomitr...   263   2e-69
tr|Q84R88|Q84R88_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...   233   4e-60
tr|Q10JZ3|Q10JZ3_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...   233   4e-60
tr|Q10JZ2|Q10JZ2_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...   233   4e-60
tr|A7QMF0|A7QMF0_VITVI DNA-directed RNA polymerase OS=Vitis vini...   228   1e-58
tr|Q01FH9|Q01FH9_OSTTA DNA-directed RNA polymerase OS=Ostreococc...   218   2e-55
tr|A4RS40|A4RS40_OSTLU DNA-directed RNA polymerase OS=Ostreococc...   217   2e-55
tr|B6NJE2|B6NJE2_BRAFL Putative uncharacterized protein OS=Branc...   214   2e-54
tr|B2GUR3|B2GUR3_XENTR LOC100158643 protein OS=Xenopus tropicali...   213   3e-54
tr|B8BQM2|B8BQM2_THAPS DNA directed RNA polymerase III, second l...   212   6e-54
tr|A9V2W9|A9V2W9_MONBE DNA-directed RNA polymerase OS=Monosiga b...   212   8e-54
tr|A8IY03|A8IY03_CHLRE DNA-directed RNA polymerase OS=Chlamydomo...   211   1e-53
tr|Q4S7G7|Q4S7G7_TETNG DNA-directed RNA polymerase (Fragment) OS...   211   2e-53
tr|A2BG99|A2BG99_DANRE DNA-directed RNA polymerase OS=Danio reri...   210   2e-53
tr|Q7Z3R8|Q7Z3R8_HUMAN DNA-directed RNA polymerase OS=Homo sapie...   210   2e-53
tr|B3KV73|B3KV73_HUMAN cDNA FLJ16205 fis, clone CTONG2019400, hi...   210   2e-53
tr|B3KRQ8|B3KRQ8_HUMAN cDNA FLJ34712 fis, clone MESAN2003852, hi...   210   2e-53
tr|A8K6H0|A8K6H0_HUMAN DNA-directed RNA polymerase OS=Homo sapie...   210   2e-53
tr|B6KDI3|B6KDI3_TOXGO DNA-directed RNA polymerase III subunit, ...   209   4e-53
tr|B7FVD4|B7FVD4_PHATR Predicted protein OS=Phaeodactylum tricor...   207   2e-52
tr|A8NJT3|A8NJT3_COPC7 DNA-directed RNA polymerase OS=Coprinopsi...   207   3e-52
tr|B0WCT6|B0WCT6_CULQU Putative uncharacterized protein OS=Culex...   206   5e-52
tr|Q9FKF1|Q9FKF1_ARATH DNA-directed RNA polymerase OS=Arabidopsi...   206   6e-52
tr|Q7Q416|Q7Q416_ANOGA DNA-directed RNA polymerase (Fragment) OS...   205   8e-52
tr|B7Q0E7|B7Q0E7_IXOSC RNA polymerase III, putative (Fragment) O...   204   2e-51
tr|A8PVW9|A8PVW9_MALGO DNA-directed RNA polymerase OS=Malassezia...   202   7e-51
tr|Q28ZV6|Q28ZV6_DROPS DNA-directed RNA polymerase OS=Drosophila...   201   2e-50
tr|B4GGQ4|B4GGQ4_DROPE GL17093 OS=Drosophila persimilis GN=GL170...   201   2e-50
tr|B3MH37|B3MH37_DROAN GF12287 OS=Drosophila ananassae GN=GF1228...   201   2e-50
tr|B4KPU7|B4KPU7_DROMO GI20961 OS=Drosophila mojavensis GN=GI209...   200   3e-50

>tr|A9RNX6|A9RNX6_PHYPA DNA-directed RNA polymerase
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_176819 PE=3 SV=1
          Length = 1135

 Score =  263 bits (673), Expect = 2e-69
 Identities = 127/148 (85%), Positives = 137/148 (92%)
 Frame = -1

Query: 444 VIRPDMLSQGLEHAISSGNWTVKRFRMERKGVTQVVSRLSFIAALGHMTRISSQFEKTRK 265
           +IRPD L+ GLEHAISSGNW VKRF+M+RKGVTQVVSRLSFIAALGHMTRISSQFEKTRK
Sbjct: 392 LIRPDTLTNGLEHAISSGNWAVKRFKMDRKGVTQVVSRLSFIAALGHMTRISSQFEKTRK 451

Query: 264 VSGPRALQPSQWGMLCPCDTPEGEACGLTKNLALMTHVTTDEEEGPLINLCTTLGVEELS 85
           VSGPRALQPSQWGMLCPCDTPEGEACGL KNL+LMTHVTTDEEE PLI LCTTLGVE+LS
Sbjct: 452 VSGPRALQPSQWGMLCPCDTPEGEACGLVKNLSLMTHVTTDEEEAPLIELCTTLGVEDLS 511

Query: 84  MLSGDEINSFKVYLVIFNGLILGVRRRP 1
           +LSG+E++S K YLV FNG ILGV RRP
Sbjct: 512 LLSGEELHSPKTYLVFFNGTILGVHRRP 539


>tr|Q84R88|Q84R88_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa
           subsp. japonica GN=OSJNBb0041J20.7 PE=3 SV=1
          Length = 1174

 Score =  233 bits (594), Expect = 4e-60
 Identities = 108/147 (73%), Positives = 134/147 (91%)
 Frame = -1

Query: 441 IRPDMLSQGLEHAISSGNWTVKRFRMERKGVTQVVSRLSFIAALGHMTRISSQFEKTRKV 262
           I+ ++++ GLE AIS+GNW +KRFRM RKGV+QV+SRLS++A+LG+MTRI+ QFEKTRK 
Sbjct: 433 IKENIITHGLERAISTGNWDIKRFRMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKT 492

Query: 261 SGPRALQPSQWGMLCPCDTPEGEACGLTKNLALMTHVTTDEEEGPLINLCTTLGVEELSM 82
           SGPRALQPSQWGMLCPCDTPEGEACGLTKNLAL+THVTTD+EEGPL+NLC +LGVE+LS+
Sbjct: 493 SGPRALQPSQWGMLCPCDTPEGEACGLTKNLALLTHVTTDQEEGPLMNLCYSLGVEDLSL 552

Query: 81  LSGDEINSFKVYLVIFNGLILGVRRRP 1
           LSG+EI++   +LV+FNGLILG  R+P
Sbjct: 553 LSGEEIHASGSFLVMFNGLILGKHRQP 579


>tr|Q10JZ3|Q10JZ3_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa
           subsp. japonica GN=Os03g0403100 PE=3 SV=1
          Length = 1155

 Score =  233 bits (594), Expect = 4e-60
 Identities = 108/147 (73%), Positives = 134/147 (91%)
 Frame = -1

Query: 441 IRPDMLSQGLEHAISSGNWTVKRFRMERKGVTQVVSRLSFIAALGHMTRISSQFEKTRKV 262
           I+ ++++ GLE AIS+GNW +KRFRM RKGV+QV+SRLS++A+LG+MTRI+ QFEKTRK 
Sbjct: 414 IKENIITHGLERAISTGNWDIKRFRMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKT 473

Query: 261 SGPRALQPSQWGMLCPCDTPEGEACGLTKNLALMTHVTTDEEEGPLINLCTTLGVEELSM 82
           SGPRALQPSQWGMLCPCDTPEGEACGLTKNLAL+THVTTD+EEGPL+NLC +LGVE+LS+
Sbjct: 474 SGPRALQPSQWGMLCPCDTPEGEACGLTKNLALLTHVTTDQEEGPLMNLCYSLGVEDLSL 533

Query: 81  LSGDEINSFKVYLVIFNGLILGVRRRP 1
           LSG+EI++   +LV+FNGLILG  R+P
Sbjct: 534 LSGEEIHASGSFLVMFNGLILGKHRQP 560


>tr|Q10JZ2|Q10JZ2_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa
           subsp. japonica GN=LOC_Os03g28960 PE=3 SV=1
          Length = 1039

 Score =  233 bits (594), Expect = 4e-60
 Identities = 108/147 (73%), Positives = 134/147 (91%)
 Frame = -1

Query: 441 IRPDMLSQGLEHAISSGNWTVKRFRMERKGVTQVVSRLSFIAALGHMTRISSQFEKTRKV 262
           I+ ++++ GLE AIS+GNW +KRFRM RKGV+QV+SRLS++A+LG+MTRI+ QFEKTRK 
Sbjct: 414 IKENIITHGLERAISTGNWDIKRFRMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKT 473

Query: 261 SGPRALQPSQWGMLCPCDTPEGEACGLTKNLALMTHVTTDEEEGPLINLCTTLGVEELSM 82
           SGPRALQPSQWGMLCPCDTPEGEACGLTKNLAL+THVTTD+EEGPL+NLC +LGVE+LS+
Sbjct: 474 SGPRALQPSQWGMLCPCDTPEGEACGLTKNLALLTHVTTDQEEGPLMNLCYSLGVEDLSL 533

Query: 81  LSGDEINSFKVYLVIFNGLILGVRRRP 1
           LSG+EI++   +LV+FNGLILG  R+P
Sbjct: 534 LSGEEIHASGSFLVMFNGLILGKHRQP 560


>tr|A7QMF0|A7QMF0_VITVI DNA-directed RNA polymerase OS=Vitis
           vinifera GN=GSVIVT00002040001 PE=3 SV=1
          Length = 1146

 Score =  228 bits (580), Expect = 1e-58
 Identities = 106/144 (73%), Positives = 127/144 (88%)
 Frame = -1

Query: 432 DMLSQGLEHAISSGNWTVKRFRMERKGVTQVVSRLSFIAALGHMTRISSQFEKTRKVSGP 253
           D ++ GLE  +S+GNW VKRFRM RKG++QVV+RLS+I +LGHMT+IS QFEK+RKVSGP
Sbjct: 402 DSITVGLERTLSTGNWDVKRFRMHRKGMSQVVARLSYIGSLGHMTKISPQFEKSRKVSGP 461

Query: 252 RALQPSQWGMLCPCDTPEGEACGLTKNLALMTHVTTDEEEGPLINLCTTLGVEELSMLSG 73
           RALQPSQWGMLCPCDTPEGEACGL KNLALMTHVTTDEEE PLI+LC +LGVE+L +LSG
Sbjct: 462 RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLISLCYSLGVEDLELLSG 521

Query: 72  DEINSFKVYLVIFNGLILGVRRRP 1
           +E+++   +L+IFNGLILG  RRP
Sbjct: 522 EELHTPNSFLIIFNGLILGKHRRP 545


>tr|Q01FH9|Q01FH9_OSTTA DNA-directed RNA polymerase OS=Ostreococcus
           tauri GN=Ot01g06000 PE=3 SV=1
          Length = 2569

 Score =  218 bits (554), Expect = 2e-55
 Identities = 110/147 (74%), Positives = 123/147 (83%)
 Frame = -1

Query: 441 IRPDMLSQGLEHAISSGNWTVKRFRMERKGVTQVVSRLSFIAALGHMTRISSQFEKTRKV 262
           IR D LS GLEHAISSGNWTVKRFRMERKGVTQV+SRLSFI+ALG MTRI+SQFEKTRKV
Sbjct: 446 IRQDTLSNGLEHAISSGNWTVKRFRMERKGVTQVLSRLSFISALGMMTRITSQFEKTRKV 505

Query: 261 SGPRALQPSQWGMLCPCDTPEGEACGLTKNLALMTHVTTDEEEGPLINLCTTLGVEELSM 82
           SGPRALQPSQWGMLCP DTPEGE+CGL KNLALMTHVTTD+EE PL  L   LGVE L+ 
Sbjct: 506 SGPRALQPSQWGMLCPSDTPEGESCGLVKNLALMTHVTTDDEEEPLRRLAHALGVEPLTW 565

Query: 81  LSGDEINSFKVYLVIFNGLILGVRRRP 1
           L+  E++S +   V+ NG +LGV  +P
Sbjct: 566 LNAGEMHSPQGAHVLMNGSLLGVHAQP 592


>tr|A4RS40|A4RS40_OSTLU DNA-directed RNA polymerase OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_39835 PE=3 SV=1
          Length = 1146

 Score =  217 bits (553), Expect = 2e-55
 Identities = 110/147 (74%), Positives = 122/147 (82%)
 Frame = -1

Query: 441 IRPDMLSQGLEHAISSGNWTVKRFRMERKGVTQVVSRLSFIAALGHMTRISSQFEKTRKV 262
           IR D LS GLEHAISSGNWTVKRFRMERKGVTQV+SRLSFI+ALG MTRI+SQFEKTRKV
Sbjct: 416 IRQDTLSNGLEHAISSGNWTVKRFRMERKGVTQVLSRLSFISALGMMTRITSQFEKTRKV 475

Query: 261 SGPRALQPSQWGMLCPCDTPEGEACGLTKNLALMTHVTTDEEEGPLINLCTTLGVEELSM 82
           SGPRALQPSQWGMLCP DTPEGE+CGL KNLALMTHVTTD+EE PL  L   LGVE L+ 
Sbjct: 476 SGPRALQPSQWGMLCPSDTPEGESCGLVKNLALMTHVTTDDEEEPLRRLAHALGVEPLTW 535

Query: 81  LSGDEINSFKVYLVIFNGLILGVRRRP 1
           L+  E++S     V+ NG +LGV  +P
Sbjct: 536 LNAGEMHSPSGAHVLMNGSLLGVHAQP 562


>tr|B6NJE2|B6NJE2_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_282817 PE=4 SV=1
          Length = 1137

 Score =  214 bits (544), Expect = 2e-54
 Identities = 104/143 (72%), Positives = 122/143 (85%)
 Frame = -1

Query: 441 IRPDMLSQGLEHAISSGNWTVKRFRMERKGVTQVVSRLSFIAALGHMTRISSQFEKTRKV 262
           +R D ++ GL +AIS+GNWTVKRF+M+R GVTQV+SRLSFI+ALG MTRISSQFEKTRKV
Sbjct: 396 MRQDQITNGLVNAISTGNWTVKRFKMDRAGVTQVLSRLSFISALGMMTRISSQFEKTRKV 455

Query: 261 SGPRALQPSQWGMLCPCDTPEGEACGLTKNLALMTHVTTDEEEGPLINLCTTLGVEELSM 82
           SGPR+LQPSQWGMLCP DTPEGEACGL KNLALMTH+TTD EE P+  L   LGVE++ +
Sbjct: 456 SGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDSEEQPIQRLAFNLGVEDVHL 515

Query: 81  LSGDEINSFKVYLVIFNGLILGV 13
           LSG+E+NS   YLV+ NG ILGV
Sbjct: 516 LSGEELNSQDSYLVMLNGNILGV 538


>tr|B2GUR3|B2GUR3_XENTR LOC100158643 protein OS=Xenopus tropicalis
           GN=LOC100158643 PE=2 SV=1
          Length = 1134

 Score =  213 bits (543), Expect = 3e-54
 Identities = 101/145 (69%), Positives = 125/145 (86%)
 Frame = -1

Query: 441 IRPDMLSQGLEHAISSGNWTVKRFRMERKGVTQVVSRLSFIAALGHMTRISSQFEKTRKV 262
           +R D ++ G+ +AISSGNW++KRF+M+R+GVTQV+SRLS+IAALG MTRISSQFEKTRKV
Sbjct: 407 MRQDQITNGMVNAISSGNWSLKRFKMDRQGVTQVLSRLSYIAALGMMTRISSQFEKTRKV 466

Query: 261 SGPRALQPSQWGMLCPCDTPEGEACGLTKNLALMTHVTTDEEEGPLINLCTTLGVEELSM 82
           SGPR+LQPSQWGMLCP DTPEGEACGL KNLALMTH+TTD E+GP+I L   LGVE++++
Sbjct: 467 SGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAANLGVEDVNL 526

Query: 81  LSGDEINSFKVYLVIFNGLILGVRR 7
           L G+E++   V+LV  NG ILGV R
Sbjct: 527 LCGEELSYANVFLVFLNGNILGVIR 551


>tr|B8BQM2|B8BQM2_THAPS DNA directed RNA polymerase III, second
           largest subunit OS=Thalassiosira pseudonana CCMP1335
           GN=RPC2 PE=4 SV=1
          Length = 1108

 Score =  212 bits (540), Expect = 6e-54
 Identities = 100/147 (68%), Positives = 122/147 (82%)
 Frame = -1

Query: 441 IRPDMLSQGLEHAISSGNWTVKRFRMERKGVTQVVSRLSFIAALGHMTRISSQFEKTRKV 262
           IRPD ++ G+  AISSGNW +KRFRM+R GVTQV+SRLS+I+ALG MTR++SQFEKTRKV
Sbjct: 373 IRPDSIAYGMMSAISSGNWVLKRFRMDRAGVTQVLSRLSYISALGMMTRVNSQFEKTRKV 432

Query: 261 SGPRALQPSQWGMLCPCDTPEGEACGLTKNLALMTHVTTDEEEGPLINLCTTLGVEELSM 82
           SGPR+LQPSQWGMLCP DTPEGEACGL KNLAL+ H+TTDEE   +  LC   GVE++++
Sbjct: 433 SGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLAHITTDEESEAIERLCRDCGVEDVTL 492

Query: 81  LSGDEINSFKVYLVIFNGLILGVRRRP 1
           LSG EI+S   +LV+ NGLI+GV  RP
Sbjct: 493 LSGHEIHSRNAFLVLLNGLIVGVHTRP 519