BP920788
Clone id YMU001_000141_F03
Library
Length 581
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000141_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AAAGCCAAGCTCGCTTTATCTTTGCATAGCAAAACTCCGTACCTACTGCACCACTGTGGC
GCACTCCATAGCAACTTTAACAAGCATAGCCATGAACATGGCATTGCATAGTATCTTTAC
ATGCATGTTCACTTCTTTATGCTTGGATTCCTCCACTTGGAGTTCATCAAGCACATAGGT
TTGCTGTTTCTCCTGCCCTCCAGTACAACTTTCACATCTTTAGCCACATGCAATAGATCA
AATTCCTCATACCTTGAGTGGGAAGAATCGGTTTCCCATGTCGTGTCAACATCCGTAGAA
CTACAATCATCCGTTTCCACTTTTTCCTCCATCTCAAGCTTTGGGATTTCCTCTATCTTC
ATTGCTTTAACTTCATCTGTAAACCACACCTTTTGACCTATATCACTCACCGATGGAGCT
TGTACCAACCATACTAGATTTTGGTCGTGTATCTTCTACTCGGTCTGGAGCCACTTGCAC
TTCTTCCAGCAGTGGAGCTTCCCTAACTGACATCTTTGCCATATAAACTGCTCCACCTCT
TTGTAGCCACAGAAGCACCCTCGGTTCTTCTTGCCGACACG
■■Homology search results ■■ -
sp_hit_id Q2QI47
Definition sp|Q2QI47|USH2A_MOUSE Usherin OS=Mus musculus
Align length 46
Score (bit) 31.6
E-value 3.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920788|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_F03.
(581 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q2QI47|USH2A_MOUSE Usherin OS=Mus musculus GN=Ush2A PE=1 SV=1 32 3.0
sp|Q8NGX3|O10T2_HUMAN Olfactory receptor 10T2 OS=Homo sapiens GN... 30 6.7
sp|Q4QXT9|FA10_TROCA Coagulation factor X OS=Tropidechis carinat... 30 6.7
sp|Q7VQQ9|GCP_BLOFL Probable O-sialoglycoprotein endopeptidase O... 30 8.7

>sp|Q2QI47|USH2A_MOUSE Usherin OS=Mus musculus GN=Ush2A PE=1 SV=1
Length = 5193

Score = 31.6 bits (70), Expect = 3.0
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Frame = +3

Query: 111 VSLHACSLLYAWIPPL---GVHQAHRF---AVSPALQYNFHIFSHM 230
VS+ LL +W+PP GV Q +R V PAL +N FS+M
Sbjct: 4266 VSMSPLQLLISWLPPRHSNGVIQGYRLQRDGVLPALNFNASTFSYM 4311


>sp|Q8NGX3|O10T2_HUMAN Olfactory receptor 10T2 OS=Homo sapiens
GN=OR10T2 PE=2 SV=1
Length = 314

Score = 30.4 bits (67), Expect = 6.7
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +3

Query: 288 NIRRTTIIRFHFFLHLKLWDFLYL-----HCFNFICKPHLLTYI 404
N+ +IRF + LH ++ FL++ C+ F+ P LL ++
Sbjct: 43 NVTIMAVIRFSWTLHTPMYGFLFILSFSESCYTFVIIPQLLVHL 86


>sp|Q4QXT9|FA10_TROCA Coagulation factor X OS=Tropidechis carinatus
GN=F10 PE=2 SV=1
Length = 483

Score = 30.4 bits (67), Expect = 6.7
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -1

Query: 578 VGKKNRGCFCGY--KEVEQFIWQRCQLGKLHCWKKCKWLQTE 459
+G C GY K + ++Q C++ +CW CK +Q E
Sbjct: 105 IGSYTCTCLAGYEGKNCQYVLYQSCRVDNGNCWHFCKPVQNE 146


>sp|Q7VQQ9|GCP_BLOFL Probable O-sialoglycoprotein endopeptidase
OS=Blochmannia floridanus GN=gcp PE=3 SV=1
Length = 353

Score = 30.0 bits (66), Expect = 8.7
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3

Query: 123 ACSLLYAW-IPPLGVHQAHRFAVSPAL 200
ACSL YAW +P +GVH ++P L
Sbjct: 95 ACSLAYAWNVPVIGVHHMEAHLLTPML 121


tr_hit_id A6TT71
Definition tr|A6TT71|A6TT71_ALKMQ Positive regulator of sigma E, RseC/MucC OS=Alkaliphilus metalliredigens (strain QYMF)
Align length 53
Score (bit) 33.5
E-value 8.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920788|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_F03.
(581 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A6TT71|A6TT71_ALKMQ Positive regulator of sigma E, RseC/MucC ... 33 8.8
tr|B6MWP7|B6MWP7_BRAFL Putative uncharacterized protein OS=Branc... 33 8.8

>tr|A6TT71|A6TT71_ALKMQ Positive regulator of sigma E, RseC/MucC
OS=Alkaliphilus metalliredigens (strain QYMF)
GN=Amet_3251 PE=4 SV=1
Length = 142

Score = 33.5 bits (75), Expect = 8.8
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -3

Query: 231 ACG*RCESCTGGQEKQQTYV--LDELQVEESKHKEVNMHVKILCNAMFMAMLV 79
ACG C SC GG TYV +E+ + ++ ++NM K + A F+ +V
Sbjct: 24 ACGESCASCKGGCTPTATYVKATNEVGAQVGQYVKLNMENKKVLKAAFLVYMV 76


>tr|B6MWP7|B6MWP7_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_87693 PE=4 SV=1
Length = 563

Score = 33.5 bits (75), Expect = 8.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1

Query: 430 HTRFWSCIFYSVWSHLHFFQQWSFPN*HLCH 522
HT W +F WS H + ++ F N H+CH
Sbjct: 429 HTDAWLYLFDHAWSFKHLWDEFKFCNGHVCH 459