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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920793
Clone id YMU001_000141_F09
Library
Length 515
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000141_F09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGTCCATTGACAAAAATCCACAGACTGACATTTCCCACAATTCTAAGAAGAACAAGATCT
CTTCAGTACCAATTGTCCAACGGGAAGCCTATGATCAATTGAAAAATTCCCTTTGGAAGG
CTGCAGGCATTTAAAGTCAAAATAGCCACTTGTGGGCAGGCGTCATTGCAAACAAACAGG
GGTACTTACAGTACTACTAATTGGCTCCACCAGTTAAACTTGCACAGAGCCATAAAGAGA
ATACGGCGATAACTCATAGAAGTGTAAGGACTCAGGCCTTCCAACGTTCTAGCTCATTCG
TGTGAATACATTGCAAAGCATGAGATGAGAATCAAGAACAGCCCCATCCCACATTGTCCA
GACTGCCTGGTAAACCTAACTGCACACATGGCATGGCAAACACAGCATCCCAAGCTGGAA
CGAATTGAACAAGTTATGTACTGGCCAGACTTTCAAAAAAGAGATGCATGAAAAACCTGT
GCCACAAAGCCATGCCACTTTATGGCCTGAATATG
■■Homology search results ■■ -
sp_hit_id Q9FUG4
Definition sp|Q9FUG4|XPB2_ARATH DNA repair helicase XPB2 OS=Arabidopsis thaliana
Align length 23
Score (bit) 33.1
E-value 0.75
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920793|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_F09.
         (502 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FUG4|XPB2_ARATH DNA repair helicase XPB2 OS=Arabidopsis tha...    33   0.75 
sp|Q38861|XPB1_ARATH DNA repair helicase XPB1 OS=Arabidopsis tha...    33   0.75 
sp|Q02870|ERCC3_DROME DNA excision repair protein haywire OS=Dro...    30   4.9  
sp|P19685|SODF_COXBU Superoxide dismutase [Fe] OS=Coxiella burne...    30   6.4  
sp|Q5XGZ8|NOC3L_XENLA Nucleolar complex protein 3 homolog OS=Xen...    30   8.2  

>sp|Q9FUG4|XPB2_ARATH DNA repair helicase XPB2 OS=Arabidopsis
           thaliana GN=XPB2 PE=2 SV=1
          Length = 766

 Score = 33.1 bits (74), Expect = 0.75
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -2

Query: 285 VGRPESLHFYELSPYSLYGSVQV 217
           V RPES+H Y L+P+SLY +V V
Sbjct: 97  VCRPESMHEYNLTPHSLYAAVSV 119


>sp|Q38861|XPB1_ARATH DNA repair helicase XPB1 OS=Arabidopsis
           thaliana GN=XPB1 PE=2 SV=3
          Length = 767

 Score = 33.1 bits (74), Expect = 0.75
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -2

Query: 285 VGRPESLHFYELSPYSLYGSVQV 217
           V RPES+H Y L+P+SLY +V V
Sbjct: 97  VCRPESMHEYNLTPHSLYAAVSV 119


>sp|Q02870|ERCC3_DROME DNA excision repair protein haywire
           OS=Drosophila melanogaster GN=hay PE=2 SV=2
          Length = 798

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -2

Query: 285 VGRPESLHFYELSPYSLYGSVQV 217
           V RPE +H Y+L+ YSLY +V V
Sbjct: 117 VCRPEHIHEYKLTAYSLYAAVSV 139


>sp|P19685|SODF_COXBU Superoxide dismutase [Fe] OS=Coxiella burnetii
           GN=sodB PE=3 SV=1
          Length = 193

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 392 HGKHSIPSWNELNKLCTGQTFKKEMHEKPVPQS 490
           HGKH     N+LNKL  G  F+KE  E+ + +S
Sbjct: 28  HGKHHRAYVNKLNKLIEGTPFEKEPLEEIIRKS 60


>sp|Q5XGZ8|NOC3L_XENLA Nucleolar complex protein 3 homolog
           OS=Xenopus laevis GN=noc3l PE=2 SV=1
          Length = 795

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = -3

Query: 239 LFMALCKFNWWSQLVVL*VPLFVCNDACPQVAILTLNA 126
           L ++L  FN+ + ++VL VPL   ND C Q++ L++ A
Sbjct: 347 LMVSLSHFNFHNNIIVLVVPL--VNDKCRQISELSMEA 382
tr_hit_id B8C0Y9
Definition tr|B8C0Y9|B8C0Y9_THAPS Predicted protein (Fragment) OS=Thalassiosira pseudonana CCMP1335
Align length 51
Score (bit) 36.6
E-value 0.69
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920793|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_F09.
         (502 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8C0Y9|B8C0Y9_THAPS Predicted protein (Fragment) OS=Thalassio...    37   0.69 
tr|Q822P5|Q822P5_CHLCV Putative uncharacterized protein OS=Chlam...    35   1.5  
tr|B7G0F2|B7G0F2_PHATR Predicted protein OS=Phaeodactylum tricor...    35   1.5  
tr|A9CRJ7|A9CRJ7_9MICR DNA repair helicase OS=Enterocytozoon bie...    35   2.0  
tr|Q1CZV0|Q1CZV0_MYXXD Putative uncharacterized protein OS=Myxoc...    34   3.4  
tr|O00835|O00835_DICDI RepB (Transcription factor IIH subunit) O...    33   5.8  
tr|Q0JK78|Q0JK78_ORYSJ Os01g0691600 protein OS=Oryza sativa subs...    33   7.6  
tr|B8LKF2|B8LKF2_PICSI Putative uncharacterized protein OS=Picea...    33   7.6  
tr|B8A801|B8A801_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.6  
tr|A9T7C2|A9T7C2_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.6  
tr|A7QNL0|A7QNL0_VITVI Chromosome chr2 scaffold_132, whole genom...    33   7.6  
tr|A2ZWS0|A2ZWS0_ORYSJ Putative uncharacterized protein OS=Oryza...    33   7.6  
tr|Q4SMF0|Q4SMF0_TETNG Chromosome 8 SCAF14552, whole genome shot...    33   9.7  
tr|B4KUY5|B4KUY5_DROMO GI12171 OS=Drosophila mojavensis GN=GI121...    33   9.7  
tr|Q5CW21|Q5CW21_CRYPV RAD25, helicase involved in DNA repair OS...    33   9.9  
tr|Q5CER1|Q5CER1_CRYHO Putative uncharacterized protein (Fragmen...    33   9.9  
tr|B3RTG7|B3RTG7_TRIAD Putative uncharacterized protein (Fragmen...    33   9.9  

>tr|B8C0Y9|B8C0Y9_THAPS Predicted protein (Fragment)
           OS=Thalassiosira pseudonana CCMP1335 GN=THAPSDRAFT_33970
           PE=4 SV=1
          Length = 625

 Score = 36.6 bits (83), Expect = 0.69
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = -2

Query: 360 WTMWDGAVL-----DSHLMLCNVFTRMS*NVGRPESLHFYELSPYSLYGSV 223
           WT  DG +      D +    +    +S  V RPE LH Y+L+PYSLY +V
Sbjct: 17  WTCPDGTIYLEAFHDLYTKAYDFLVAISEPVARPEYLHEYKLTPYSLYAAV 67


>tr|Q822P5|Q822P5_CHLCV Putative uncharacterized protein
           OS=Chlamydophila caviae GN=CCA_00634 PE=4 SV=1
          Length = 416

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +1

Query: 289 LAHSCEYIAKHEMRIKNSPIPHCPDCLVNLTAHMAWQTQHPKLERIEQVMYW 444
           L  +CE I   E+  +N  + +CP CL+N   H+    ++P  ER+E  +YW
Sbjct: 157 LQQACEGIQLPEL--ENILLKNCPLCLINKFIHLG-PREYPDAERMEPTVYW 205


>tr|B7G0F2|B7G0F2_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_20574 PE=4 SV=1
          Length = 720

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = -2

Query: 360 WTMWDGAVL-----DSHLMLCNVFTRMS*NVGRPESLHFYELSPYSLYGSV 223
           WT  DG +      D ++   +    ++  V RPE LH Y+L+PYSLY +V
Sbjct: 6   WTCPDGNIYLEAFHDLYVSAYDFLVAIAEPVARPEFLHQYKLTPYSLYAAV 56


>tr|A9CRJ7|A9CRJ7_9MICR DNA repair helicase OS=Enterocytozoon
           bieneusi H348 GN=EBI_23223 PE=4 SV=1
          Length = 609

 Score = 35.0 bits (79), Expect = 2.0
 Identities = 17/65 (26%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
 Frame = -2

Query: 363 VWTMWDGAVL-----DSHLMLCNVFTRMS*NVGRPESLHFYELSPYSLYGSVQV*L-VEP 202
           +W  +DG ++     ++     N    ++  + RPE++H Y+++PYSL+ +  V L  + 
Sbjct: 10  LWINYDGLIILEMFRENSQQATNFLIAIAEPISRPENIHEYQITPYSLFAAASVGLTTDQ 69

Query: 201 ISSTV 187
           I++T+
Sbjct: 70  ITNTL 74


>tr|Q1CZV0|Q1CZV0_MYXXD Putative uncharacterized protein
           OS=Myxococcus xanthus (strain DK 1622) GN=MXAN_5936 PE=4
           SV=1
          Length = 282

 Score = 34.3 bits (77), Expect = 3.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 322 EMRIKNSPIPHCPDCLVNLTAHMAWQTQHPKLERIEQVMYWPDFQK 459
           E  ++ + +PH    L +LT    W  + P  E +E+++ WP F K
Sbjct: 78  EQHLQATELPHWYPKLTDLTPRSVWFDERPDAETVERLLGWPVFVK 123


>tr|O00835|O00835_DICDI RepB (Transcription factor IIH subunit)
           OS=Dictyostelium discoideum GN=repB PE=4 SV=1
          Length = 800

 Score = 33.5 bits (75), Expect = 5.8
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = -2

Query: 285 VGRPESLHFYELSPYSLYGSVQV 217
           V RP+++H Y+L+PYSLY +V V
Sbjct: 112 VCRPQNIHEYQLTPYSLYAAVSV 134


>tr|Q0JK78|Q0JK78_ORYSJ Os01g0691600 protein OS=Oryza sativa subsp.
           japonica GN=Os01g0691600 PE=4 SV=1
          Length = 580

 Score = 33.1 bits (74), Expect = 7.6
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -2

Query: 285 VGRPESLHFYELSPYSLYGSVQV 217
           V RPES+H Y L+P+SLY +V V
Sbjct: 97  VCRPESMHEYNLTPHSLYAAVSV 119


>tr|B8LKF2|B8LKF2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 772

 Score = 33.1 bits (74), Expect = 7.6
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -2

Query: 285 VGRPESLHFYELSPYSLYGSVQV 217
           V RPES+H Y L+P+SLY +V V
Sbjct: 96  VCRPESMHEYNLTPHSLYAAVSV 118


>tr|B8A801|B8A801_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_03346 PE=4 SV=1
          Length = 766

 Score = 33.1 bits (74), Expect = 7.6
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -2

Query: 285 VGRPESLHFYELSPYSLYGSVQV 217
           V RPES+H Y L+P+SLY +V V
Sbjct: 97  VCRPESMHEYNLTPHSLYAAVSV 119


>tr|A9T7C2|A9T7C2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_168477 PE=4 SV=1
          Length = 734

 Score = 33.1 bits (74), Expect = 7.6
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -2

Query: 285 VGRPESLHFYELSPYSLYGSVQV 217
           V RPES+H Y L+P+SLY +V V
Sbjct: 62  VCRPESMHEYNLTPHSLYAAVSV 84