BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920799|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_G06.
         (230 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P68340|VHS_HHV2H Virion host shutoff protein OS=Human herpesv...    29   6.5  
sp|P68339|VHS_HHV2G Virion host shutoff protein OS=Human herpesv...    29   6.5  
sp|O39988|VHS_HHV23 Virion host shutoff protein OS=Human herpesv...    29   6.5  
sp|Q61826|MADCA_MOUSE Mucosal addressin cell adhesion molecule 1...    29   6.5  
sp|A7MB16|EIF3B_BOVIN Eukaryotic translation initiation factor 3...    29   8.5  

>sp|P68340|VHS_HHV2H Virion host shutoff protein OS=Human
           herpesvirus 2 (strain HG52) GN=UL41 PE=3 SV=1
          Length = 492

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -3

Query: 216 CCSIYRCS---YTHASRVVFCSKNCGLVWDITTGERIRGFSCRGNLEDF*RVECPLVERL 46
           C ++Y  +   Y H +        C +V DI+TG  I    CR  L+ F ++  P    L
Sbjct: 199 CANLYHTNTVAYVHTTDTDLLLMGCDIVLDISTG-YIPTIHCRDLLQYF-KMSYPQFLAL 256

Query: 45  FMRC 34
           F+RC
Sbjct: 257 FVRC 260


>sp|P68339|VHS_HHV2G Virion host shutoff protein OS=Human
           herpesvirus 2 (strain G) GN=UL41 PE=3 SV=1
          Length = 492

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -3

Query: 216 CCSIYRCS---YTHASRVVFCSKNCGLVWDITTGERIRGFSCRGNLEDF*RVECPLVERL 46
           C ++Y  +   Y H +        C +V DI+TG  I    CR  L+ F ++  P    L
Sbjct: 199 CANLYHTNTVAYVHTTDTDLLLMGCDIVLDISTG-YIPTIHCRDLLQYF-KMSYPQFLAL 256

Query: 45  FMRC 34
           F+RC
Sbjct: 257 FVRC 260


>sp|O39988|VHS_HHV23 Virion host shutoff protein OS=Human
           herpesvirus 2 (strain 333) GN=UL41 PE=3 SV=1
          Length = 492

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -3

Query: 216 CCSIYRCS---YTHASRVVFCSKNCGLVWDITTGERIRGFSCRGNLEDF*RVECPLVERL 46
           C ++Y  +   Y H +        C +V DI+TG  I    CR  L+ F ++  P    L
Sbjct: 199 CANLYHTNTVAYVHTTDTDLLLMGCDIVLDISTG-YIPTIHCRDLLQYF-KMSYPQFLAL 256

Query: 45  FMRC 34
           F+RC
Sbjct: 257 FVRC 260


>sp|Q61826|MADCA_MOUSE Mucosal addressin cell adhesion molecule 1
           OS=Mus musculus GN=Madcam1 PE=1 SV=2
          Length = 405

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 170 SSAARIAAWSGTSLLGKESVVFPVEGIWRIFEEWSAPSWSDCS 42
           +S++ +  W G+ +LG  ++VF    +W+ +     P  S C+
Sbjct: 361 NSSSTVVLWIGSLVLGLLALVFLAYRLWKCYRPGPRPDTSSCT 403


>sp|A7MB16|EIF3B_BOVIN Eukaryotic translation initiation factor 3
           subunit B OS=Bos taurus GN=EIF3B PE=2 SV=1
          Length = 786

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 147 LVWDITTGERIRGFSCRGN 91
           ++WDI TG++ RGF C  +
Sbjct: 377 IIWDILTGQKKRGFHCESS 395

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920799|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_G06.
         (230 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q00TQ8|Q00TQ8_OSTTA Peptidyl-prolyl cis-trans isomerase OS=Os...    34   3.2  

>tr|Q00TQ8|Q00TQ8_OSTTA Peptidyl-prolyl cis-trans isomerase
           OS=Ostreococcus tauri GN=Ot17g00310 PE=3 SV=1
          Length = 1124

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -3

Query: 213 CSIYRCSYTHASRVVF--CSKNCGLVWDITTGERIRGFSCRGNLED 82
           CS+ RC Y H   ++   C      V+D  TG+R+R +  RGNL+D
Sbjct: 561 CSV-RCGYLHEDGLIAVGCGDKHVRVFDTMTGKRVRTYVPRGNLDD 605