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NBDC - LSDB Archive
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BP920802
Clone id YMU001_000141_G11
Library
Length 501
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000141_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGATGATGCTGCAAAGTGCCCCTATGCTCAAGGCCAATATCAACCACGTACAAATGCACC
TACCGCAAATGCAATCTCGGGCCTCGAGATCAGTATCTCGTATATGAGACTCCCGAATGT
TGATGCAATCTTGGAAATATCTGCCAATCTGATTATCTCAATCAAATCTGGCTCAGAGCT
CTACTCATGGCAATCACTCTGACACTCGAACTCCGATCCTTGGAATCCATCCTCGTGTCC
ATCTCATGTTACATGCGCACCAAGAGCATCTGTCTGTTCTGAACCCTGGGTGGGAAGAGC
AATGCCTAGTTCCAACTTACATGCATCAGTCTCTGGCCTAAGCATATCCATGAATGATTG
AATCACGGTTGAATCCTCAACGCTCAAGCCATCCATATCTGTCATCGCATCCACGAATGA
CATGCCCTGGTGCACAACTGGCTTAACATGCTCACAAACTAGAGTATCATGCAACCTATC
CGGAAAGGAGATATGCGTACT
■■Homology search results ■■ -
sp_hit_id Q80VP1
Definition sp|Q80VP1|EPN1_MOUSE Epsin-1 OS=Mus musculus
Align length 33
Score (bit) 32.0
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920802|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_G11.
         (501 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q80VP1|EPN1_MOUSE Epsin-1 OS=Mus musculus GN=Epn1 PE=1 SV=3         32   1.6  
sp|Q9YN02|RPOA_PRRS1 Replicase polyprotein 1ab OS=Porcine reprod...    31   3.7  
sp|Q8B912|RPOA_PRRSB Replicase polyprotein 1ab OS=Porcine reprod...    30   4.8  
sp|P06199|ACM2_PIG Muscarinic acetylcholine receptor M2 OS=Sus s...    30   4.8  
sp|Q6EGH7|COX1_ZYGTR Cytochrome c oxidase subunit 1 OS=Zygogeomy...    30   6.3  
sp|O78749|COX1_SHEEP Cytochrome c oxidase subunit 1 OS=Ovis arie...    30   6.3  
sp|Q96062|COX1_RHIUN Cytochrome c oxidase subunit 1 OS=Rhinocero...    30   6.3  
sp|P05503|COX1_RAT Cytochrome c oxidase subunit 1 OS=Rattus norv...    30   6.3  
sp|O79429|COX1_RABIT Cytochrome c oxidase subunit 1 OS=Oryctolag...    30   6.3  
sp|O79876|COX1_PIG Cytochrome c oxidase subunit 1 OS=Sus scrofa ...    30   6.3  
sp|Q00527|COX1_PHOVI Cytochrome c oxidase subunit 1 OS=Phoca vit...    30   6.3  
sp|Q9ZXY2|COX1_PAPHA Cytochrome c oxidase subunit 1 OS=Papio ham...    30   6.3  
sp|Q6EGI0|COX1_PAPBU Cytochrome c oxidase subunit 1 OS=Pappogeom...    30   6.3  
sp|Q6EGI3|COX1_ORTHI Cytochrome c oxidase subunit 1 OS=Orthogeom...    30   6.3  
sp|Q6EGI2|COX1_ORTGR Cytochrome c oxidase subunit 1 OS=Orthogeom...    30   6.3  
sp|P00397|COX1_MOUSE Cytochrome c oxidase subunit 1 OS=Mus muscu...    30   6.3  
sp|Q38PS0|COX1_MAMPR Cytochrome c oxidase subunit 1 OS=Mammuthus...    30   6.3  
sp|P92661|COX1_MACRO Cytochrome c oxidase subunit 1 OS=Macropus ...    30   6.3  
sp|Q9TA27|COX1_LOXAF Cytochrome c oxidase subunit 1 OS=Loxodonta...    30   6.3  
sp|Q8LX30|COX1_LEMCA Cytochrome c oxidase subunit 1 OS=Lemur cat...    30   6.3  
sp|P48659|COX1_HORSE Cytochrome c oxidase subunit 1 OS=Equus cab...    30   6.3  
sp|Q9ZZY9|COX1_HIPAM Cytochrome c oxidase subunit 1 OS=Hippopota...    30   6.3  
sp|P38595|COX1_HALGR Cytochrome c oxidase subunit 1 OS=Halichoer...    30   6.3  
sp|Q6EGH8|COX1_GEOTE Cytochrome c oxidase subunit 1 OS=Geomys te...    30   6.3  
sp|Q6EGH9|COX1_GEOBE Cytochrome c oxidase subunit 1 OS=Geomys br...    30   6.3  
sp|P48888|COX1_FELCA Cytochrome c oxidase subunit 1 OS=Felis sil...    30   6.3  
sp|P92477|COX1_EQUAS Cytochrome c oxidase subunit 1 OS=Equus asi...    30   6.3  
sp|Q2I3H2|COX1_ELEMA Cytochrome c oxidase subunit 1 OS=Elephas m...    30   6.3  
sp|Q8W9N4|COX1_DUGDU Cytochrome c oxidase subunit 1 OS=Dugong du...    30   6.3  
sp|P41310|COX1_DIDMA Cytochrome c oxidase subunit 1 OS=Didelphis...    30   6.3  

>sp|Q80VP1|EPN1_MOUSE Epsin-1 OS=Mus musculus GN=Epn1 PE=1 SV=3
          Length = 575

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 212 SDPWN-PSSCPSHVTCAPRASVCSEPWVGRAMP 307
           SDPW  P+S P   T  P A+  S+PW G A+P
Sbjct: 273 SDPWGGPASVP---TAVPVAAAASDPWGGPAVP 302


>sp|Q9YN02|RPOA_PRRS1 Replicase polyprotein 1ab OS=Porcine
            reproductive and respiratory syndrome virus (strain
            16244B) GN=rep PE=3 SV=2
          Length = 3966

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 230  SSCPSHVTCAPRASVCSEPWVGRA--MPSSNLHASVSG 337
            + CP+    AP+A  C++ W GRA  + SS +   V G
Sbjct: 1877 ADCPNWQGAAPKAQFCADGWTGRAYWLTSSGVEPGVIG 1914


>sp|Q8B912|RPOA_PRRSB Replicase polyprotein 1ab OS=Porcine
            reproductive and respiratory syndrome virus (strain HB-1)
            GN=rep PE=2 SV=2
          Length = 3963

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 230  SSCPSHVTCAPRASVCSEPWVGRA--MPSSNLHASVSG 337
            + CP+    AP+A  C + W GRA  + SS +   V G
Sbjct: 1877 ADCPNWQGAAPKAQFCEDGWTGRAYWLTSSGVEPGVIG 1914


>sp|P06199|ACM2_PIG Muscarinic acetylcholine receptor M2 OS=Sus
           scrofa GN=CHRM2 PE=2 SV=1
          Length = 466

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +2

Query: 257 APRASVCSEPWVGRAMPSSNLHASVSGLSISM-ND*ITVESSTLKPSISVIASTNDMPWC 433
           APR +V      G    SSN   SVS ++ +M +D IT + +T+  S+      N    C
Sbjct: 265 APRDAVTENCVQGEEKESSNDSTSVSAVASNMRDDEITQDENTVSTSLGHSKDENSKQTC 324

Query: 434 TTGLTCSQTRVSC 472
              +T +Q   SC
Sbjct: 325 IKIVTKTQKSDSC 337


>sp|Q6EGH7|COX1_ZYGTR Cytochrome c oxidase subunit 1 OS=Zygogeomys
           trichopus GN=MT-CO1 PE=3 SV=1
          Length = 516

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 140 SANLIISIKSGSELYSWQSL*HSNSDPWNPS 232
           SA +II+I +G +++SW +  H  +  W+P+
Sbjct: 307 SATMIIAIPTGVKVFSWLATLHGGNIKWSPA 337


>sp|O78749|COX1_SHEEP Cytochrome c oxidase subunit 1 OS=Ovis aries
           GN=MT-CO1 PE=3 SV=1
          Length = 514

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 140 SANLIISIKSGSELYSWQSL*HSNSDPWNPS 232
           SA +II+I +G +++SW +  H  +  W+P+
Sbjct: 307 SATMIIAIPTGVKVFSWLATLHGGNIKWSPA 337


>sp|Q96062|COX1_RHIUN Cytochrome c oxidase subunit 1 OS=Rhinoceros
           unicornis GN=MT-CO1 PE=3 SV=1
          Length = 514

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 140 SANLIISIKSGSELYSWQSL*HSNSDPWNPS 232
           SA +II+I +G +++SW +  H  +  W+P+
Sbjct: 307 SATMIIAIPTGVKVFSWLATLHGGNIKWSPA 337


>sp|P05503|COX1_RAT Cytochrome c oxidase subunit 1 OS=Rattus
           norvegicus GN=Mtco1 PE=2 SV=2
          Length = 514

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 140 SANLIISIKSGSELYSWQSL*HSNSDPWNPS 232
           SA +II+I +G +++SW +  H  +  W+P+
Sbjct: 307 SATMIIAIPTGVKVFSWLATLHGGNIKWSPA 337


>sp|O79429|COX1_RABIT Cytochrome c oxidase subunit 1 OS=Oryctolagus
           cuniculus GN=MT-CO1 PE=3 SV=1
          Length = 513

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 140 SANLIISIKSGSELYSWQSL*HSNSDPWNPS 232
           SA +II+I +G +++SW +  H  +  W+P+
Sbjct: 307 SATMIIAIPTGVKVFSWLATLHGGNIKWSPA 337


>sp|O79876|COX1_PIG Cytochrome c oxidase subunit 1 OS=Sus scrofa
           GN=MT-CO1 PE=3 SV=2
          Length = 514

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 140 SANLIISIKSGSELYSWQSL*HSNSDPWNPS 232
           SA +II+I +G +++SW +  H  +  W+P+
Sbjct: 307 SATMIIAIPTGVKVFSWLATLHGGNIKWSPA 337
tr_hit_id B0UUU8
Definition tr|B0UUU8|B0UUU8_HAES2 YadA domain protein OS=Haemophilus somnus (strain 2336)
Align length 122
Score (bit) 38.1
E-value 0.24
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920802|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_G11.
         (501 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0UUU8|B0UUU8_HAES2 YadA domain protein OS=Haemophilus somnus...    38   0.24 
tr|A6EQY5|A6EQY5_9BACT Isochorismate synthase entC OS=unidentifi...    35   1.5  
tr|B3MU64|B3MU64_DROAN GF21041 OS=Drosophila ananassae GN=GF2104...    35   2.6  
tr|B8M966|B8M966_9EURO Putative uncharacterized protein OS=Talar...    35   2.6  
tr|A9RD81|A9RD81_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.4  
tr|A8XRY2|A8XRY2_CAEBR Putative uncharacterized protein OS=Caeno...    33   5.7  
tr|Q6QJ62|Q6QJ62_9NEOP Cytochrome c oxidase subunit 1 (Fragment)...    33   7.4  
tr|Q6QJ60|Q6QJ60_9NEOP Cytochrome c oxidase subunit 1 (Fragment)...    33   7.4  
tr|Q56U02|Q56U02_9HYME Cytochrome c oxidase subunit 1 (Fragment)...    33   7.4  
tr|Q56U01|Q56U01_9HYME Cytochrome c oxidase subunit 1 (Fragment)...    33   7.4  
tr|A4HM87|A4HM87_LEIBR Proteophosphoglycan ppg4 OS=Leishmania br...    33   7.4  
tr|A5BAF2|A5BAF2_VITVI Putative uncharacterized protein OS=Vitis...    33   7.6  
tr|A0DL07|A0DL07_PARTE Chromosome undetermined scaffold_55, whol...    28   9.7  
tr|A0CF96|A0CF96_PARTE Chromosome undetermined scaffold_174, who...    28   9.7  
tr|Q957G1|Q957G1_9NEOP Cytochrome c oxidase subunit 1 (Fragment)...    33   9.7  
tr|Q94PG8|Q94PG8_9NEOP Cytochrome c oxidase subunit 1 (Fragment)...    33   9.7  
tr|Q8HGD2|Q8HGD2_9NEOP Cytochrome c oxidase subunit 1 (Fragment)...    33   9.7  
tr|Q6TKG3|Q6TKG3_9NEOP Cytochrome c oxidase subunit 1 (Fragment)...    33   9.7  
tr|Q6TKG1|Q6TKG1_9NEOP Cytochrome c oxidase subunit 1 (Fragment)...    33   9.7  
tr|Q6RV25|Q6RV25_9NEOP Cytochrome c oxidase subunit 1 (Fragment)...    33   9.7  
tr|Q6RV23|Q6RV23_9NEOP Cytochrome c oxidase subunit 1 (Fragment)...    33   9.7  
tr|Q6QJ66|Q6QJ66_9NEOP Cytochrome c oxidase subunit 1 (Fragment)...    33   9.7  
tr|Q6QJ64|Q6QJ64_9NEOP Cytochrome c oxidase subunit 1 (Fragment)...    33   9.7  
tr|A5C071|A5C071_VITVI Putative uncharacterized protein OS=Vitis...    33   9.9  
tr|A5BYL9|A5BYL9_VITVI Putative uncharacterized protein OS=Vitis...    33   9.9  
tr|A5BJP3|A5BJP3_VITVI Putative uncharacterized protein (Fragmen...    33   9.9  
tr|A5AUE7|A5AUE7_VITVI Putative uncharacterized protein OS=Vitis...    33   9.9  
tr|A7EUS9|A7EUS9_SCLS1 Putative uncharacterized protein OS=Scler...    33   9.9  

>tr|B0UUU8|B0UUU8_HAES2 YadA domain protein OS=Haemophilus somnus
            (strain 2336) GN=HSM_1571 PE=4 SV=1
          Length = 3923

 Score = 38.1 bits (87), Expect = 0.24
 Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
 Frame = -1

Query: 459  VCEHVKPVVHQGMSFVDAMTDMDGLSV--------EDSTVIQSFMDMLRPETDACKLELG 304
            V E  K +  Q     D M  ++GL          ED T +Q+ ++  + + +  K ELG
Sbjct: 3535 VSEKAKALSEQAKKATDWMLVINGLEQAMNAMPEGEDKTKLQTQLEENKKQLEKAKEELG 3594

Query: 303  IALPTQGSEQTDALGAHVT*DGHEDGFQGSEFECQSDCHE*SSEPDLIEIIRLADISKIA 124
             A       QT+   A+   D +E  ++G  +E  +D  +  S+ DL  +  +AD+  +A
Sbjct: 3595 KAKTALTEAQTELTKAN---DAYEKNYEG--YEKVADLVKPDSQADLTNVATIADVQAVA 3649

Query: 123  ST 118
             +
Sbjct: 3650 KS 3651


>tr|A6EQY5|A6EQY5_9BACT Isochorismate synthase entC OS=unidentified
           eubacterium SCB49 GN=SCB49_10762 PE=4 SV=1
          Length = 356

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = -1

Query: 498 THISFPDRLHDTLVCEHVKPVVHQGMSFVDAMTDMDGLSVEDSTVIQSFMDMLRPETDAC 319
           TH  F    + T V +  KP  HQ  S V   TD+ G+  ++   ++ F++ L P    C
Sbjct: 209 THAIFDSLKNITPVLKMSKPYTHQAGSIVHLRTDVTGIVKKNKAKLEKFINALHPTPAVC 268

Query: 318 KLEL 307
            + +
Sbjct: 269 GMPM 272


>tr|B3MU64|B3MU64_DROAN GF21041 OS=Drosophila ananassae GN=GF21041
           PE=4 SV=1
          Length = 929

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 97  DTDLEARDCICGRCICTW 44
           D D+E  DC CG+C+C W
Sbjct: 689 DCDMERADCFCGQCVCKW 706


>tr|B8M966|B8M966_9EURO Putative uncharacterized protein
            OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_111970 PE=4
            SV=1
          Length = 740

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 18/166 (10%)
 Frame = +2

Query: 50   TNAPTANAISGLEI-SISYMRLPNVDAILEISANLIISIKSGSELYSWQSL*HSNSDPWN 226
            ++ P+A++ISG    S S    P+       S     S  S S   S +S   S      
Sbjct: 561  SSTPSASSISGTSTPSTSTSSTPSTLRAAATSTTFTTSSTSTSSRTSARSSSTSTGLLNT 620

Query: 227  PSSCPSHVTCAPRASVCSEPWVGR--AMPSSNLHASVSGLSISMND*ITVESSTLK---- 388
            PS   +  +  P  S  S+   G    +PS N  +SVS  S+ +    T   +T+     
Sbjct: 621  PSGSLTSSSSTPTTSTTSKTSTGAIDTLPSPNSTSSVSSASVGVTSSATAPGNTVSTPIL 680

Query: 389  ----------PSISVIASTNDMPWCTTGLT-CSQTRVSCNLSGKEI 493
                      PS  +   T  +P  TTG +  + +R+S ++SG+ +
Sbjct: 681  NPGTISGTRTPSPIISGVTETVPATTTGFSHGASSRISQSISGRSL 726


>tr|A9RD81|A9RD81_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_64366 PE=4 SV=1
          Length = 301

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
 Frame = +2

Query: 266 ASVCSEPWVGRAMP---SSNLHASVSGLSISMND*ITVESSTLKPSISVIASTNDMPWCT 436
           +S+C +P  GR++P   S N  AS S  S++ +D +  ESS L+ +  V +S N +  C 
Sbjct: 218 SSLCVKPLTGRSLPPRLSGNSMASDS--SVTPDDILPRESSCLRSAGPVQSSKNSLICCL 275

Query: 437 TGLTCSQTRVSCNLSGK 487
            G   S   ++     K
Sbjct: 276 KGYASSANNLNATYQNK 292


>tr|A8XRY2|A8XRY2_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG17937 PE=4 SV=2
          Length = 330

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
 Frame = +3

Query: 111 SRMLMQSWKYLPI*LSQ-----SNLAQSSTHGN--HSDTRTPILGIHPR 236
           S  L QSWKY P   S+     SN +++S  GN  HSD  T I  IH R
Sbjct: 126 SGWLYQSWKYFPDMRSELRTYLSNSSENSNFGNLPHSDAETHITCIHTR 174


>tr|Q6QJ62|Q6QJ62_9NEOP Cytochrome c oxidase subunit 1 (Fragment)
           OS=Paraphlegopteryx morsei GN=COI PE=3 SV=1
          Length = 523

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +2

Query: 140 SANLIISIKSGSELYSWQSL*HSNSDPWNPS 232
           SA +II+I +G +++SW +  H NS  +NPS
Sbjct: 316 SATMIIAIPTGIKIFSWLATLHGNSINYNPS 346


>tr|Q6QJ60|Q6QJ60_9NEOP Cytochrome c oxidase subunit 1 (Fragment)
           OS=Paraphlegopteryx morsei GN=COI PE=3 SV=1
          Length = 523

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +2

Query: 140 SANLIISIKSGSELYSWQSL*HSNSDPWNPS 232
           SA +II+I +G +++SW +  H NS  +NPS
Sbjct: 316 SATMIIAIPTGIKIFSWLATLHGNSINYNPS 346


>tr|Q56U02|Q56U02_9HYME Cytochrome c oxidase subunit 1 (Fragment)
           OS=Mesochorus sp. SK-CA-2004b PE=3 SV=1
          Length = 261

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 140 SANLIISIKSGSELYSWQSL*HSNSDPWNPSS 235
           SA +II+I +G +++SW +  H     WNPS+
Sbjct: 54  SATMIIAIPTGIKVFSWLATIHGTKIKWNPSN 85


>tr|Q56U01|Q56U01_9HYME Cytochrome c oxidase subunit 1 (Fragment)
           OS=Mesochorus sp. SK-CA-2004a PE=3 SV=1
          Length = 261

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 140 SANLIISIKSGSELYSWQSL*HSNSDPWNPSS 235
           SA +II+I +G +++SW +  H     WNPS+
Sbjct: 54  SATMIIAIPTGIKVFSWLATIHGTKIKWNPSN 85