BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920803|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_H02.
         (362 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q10429|CND3_SCHPO Condensin complex subunit 3 OS=Schizosaccha...    33   0.45 
sp|Q5WFW9|CINA_BACSK Putative competence-damage inducible protei...    30   4.9  
sp|P42333|BCRB_BACLI Bacitracin transport permease protein BCRB ...    30   4.9  
sp|P17487|HM12_CAEEL Homeobox protein ceh-12 OS=Caenorhabditis e...    29   6.4  

>sp|Q10429|CND3_SCHPO Condensin complex subunit 3
           OS=Schizosaccharomyces pombe GN=cnd3 PE=1 SV=1
          Length = 875

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
 Frame = +2

Query: 86  WFPHYPFSLHYSSFREGTYFSNSL-HL*GI--------VLIRVWYMLYSIVSWVTTISLY 238
           +FP Y F  H + +R  T F ++L  L  I        V + + ++   ++ W     LY
Sbjct: 665 FFPVYAFGAHENQWRIATIFCDALLSLLEIYRDLDEDDVQLSIGHIAQQMLDWTDNEKLY 724

Query: 239 LTLSFKGDPGLILNSSVQLHLNRLL 313
              +  GD  + LN +V LHL  ++
Sbjct: 725 ERKTQTGDDYIALNHNVHLHLANMI 749


>sp|Q5WFW9|CINA_BACSK Putative competence-damage inducible protein
           OS=Bacillus clausii (strain KSM-K16) GN=cinA PE=3 SV=1
          Length = 417

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 161 GAASLRSTYPHERKNSARRM-DNVETMIGKRVQS 63
           G   LR T  H  KN A R+ D  ET+I KRV S
Sbjct: 216 GEVKLRLTVKHADKNEAARLLDETETLIRKRVGS 249


>sp|P42333|BCRB_BACLI Bacitracin transport permease protein BCRB
           OS=Bacillus licheniformis GN=bcrB PE=3 SV=1
          Length = 208

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 170 IVLIRVWYMLYSIVSWVTTISLYLTLSFKGDPGLIL 277
           +VL+ +W M+ ++++WV T+   L   F+G    +L
Sbjct: 69  LVLLLIWIMMLTLIAWVLTLLFGLIGQFEGLSSAVL 104


>sp|P17487|HM12_CAEEL Homeobox protein ceh-12 OS=Caenorhabditis
           elegans GN=ceh-12 PE=2 SV=2
          Length = 180

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 280 FISPTAPQSTARPRRSYTSIRYPYVPL 360
           F S T+P ST  P  +YTS+  P +PL
Sbjct: 64  FSSSTSPTSTVTPLSAYTSLVQPVLPL 90

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920803|Adiantum capillus-veneris mRNA, clone:
YMU001_000141_H02.
         (362 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0B5M7|A0B5M7_METTP Metal-binding protein-like OS=Methanosaet...    39   0.100
tr|Q1QQF7|Q1QQF7_NITHX Cyclic nucleotide-binding protein OS=Nitr...    33   5.5  

>tr|A0B5M7|A0B5M7_METTP Metal-binding protein-like OS=Methanosaeta
           thermophila (strain DSM 6194 / PT) GN=Mthe_0203 PE=4
           SV=1
          Length = 205

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 10/52 (19%)
 Frame = -2

Query: 145 EVRTLTKGRIVQGEWIMWKP*LERGCRA*PLSICCP----------RMVDDY 20
           ++R ++ G +V GEW+ WK     GCRA    +CCP          RM++DY
Sbjct: 24  DIRLISTGIVVVGEWVRWK--CRYGCRAYGKHLCCPPYAPSPEETKRMLEDY 73


>tr|Q1QQF7|Q1QQF7_NITHX Cyclic nucleotide-binding protein
           OS=Nitrobacter hamburgensis (strain X14 / DSM 10229)
           GN=Nham_0652 PE=4 SV=1
          Length = 222

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 25/73 (34%), Positives = 37/73 (50%)
 Frame = +2

Query: 107 SLHYSSFREGTYFSNSLHL*GIVLIRVWYMLYSIVSWVTTISLYLTLSFKGDPGLILNSS 286
           SL  S F   TY   ++     + +RV+ ML ++V  +T ISL+  L F    GL   + 
Sbjct: 15  SLAASFFVVATYTMRTM-----IPLRVFGMLANLVLMITAISLHNVLQFGLHAGLFCLNG 69

Query: 287 VQLHLNRLLVHDV 325
            +LH   LLV +V
Sbjct: 70  YRLHQMLLLVREV 82