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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920810
Clone id YMU001_000142_A06
Library
Length 457
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000142_A06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTGAATCAAAGTTACATTTGTCTGTAATAGTAATACAAAAACCTCAGAAGGATGGAGACC
AAAGACACCGGCCCTGATTTTCTGCGCCACTTTCAGGGCCCAAAGTACATTGATGTTGCA
CACAGGAACGACTACTCTAAGCAACCAGCTACTGGTATCACTTCATCCCCTTTTACCTCT
TGTTGATAAACCCCCTTGAATATAATGGGCTGTACAGAGTGCTCTTCAAAGCTCACCCAT
TCATAAGTAGCAAGTGGGTCAGCCTAACCTTCTTCAGGTGGCTTAAACAAGCTACTAGAG
AACTTAATCAGCATCATCTTTGGTGGATCATCAATCTCGGGTAGTTTACACTTTATTTAC
ACTACTTATGTGGTGGACCTGTACAGGAATCCGAGCATCGAGGGGGCGGCACATGCATGC
CCTTACTCTGGCATTCATCCATGCTTGGTTTCTCTCA
■■Homology search results ■■ -
sp_hit_id Q3AMJ2
Definition sp|Q3AMJ2|PUR5_SYNSC Phosphoribosylformylglycinamidine cyclo-ligase OS=Synechococcus sp. (strain CC9605)
Align length 32
Score (bit) 29.6
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920810|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_A06.
         (457 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3AMJ2|PUR5_SYNSC Phosphoribosylformylglycinamidine cyclo-lig...    30   6.4  
sp|Q6UXL0|I20RB_HUMAN Interleukin-20 receptor beta chain OS=Homo...    29   8.4  

>sp|Q3AMJ2|PUR5_SYNSC Phosphoribosylformylglycinamidine cyclo-ligase
           OS=Synechococcus sp. (strain CC9605) GN=purM PE=3 SV=2
          Length = 345

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 246 SSKWVSLTFFRWLKQATRELNQHHLWWIINLG 341
           +S W   T FRWL++A   + +  LW   NLG
Sbjct: 267 ASSWTRPTLFRWLQEA-GNIPERDLWHTFNLG 297


>sp|Q6UXL0|I20RB_HUMAN Interleukin-20 receptor beta chain OS=Homo
           sapiens GN=IL20RB PE=1 SV=1
          Length = 311

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 195 LEYNGLYRVLFKAHPFISSKWVSLT 269
           +EY G Y  L+ +H +I S W SLT
Sbjct: 68  VEYQGEYESLYTSHIWIPSSWCSLT 92
tr_hit_id Q4K8D6
Definition tr|Q4K8D6|Q4K8D6_PSEF5 Acyltransferase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
Align length 35
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920810|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_A06.
         (457 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4K8D6|Q4K8D6_PSEF5 Acyltransferase OS=Pseudomonas fluorescen...    34   4.1  
tr|A7XI82|A7XI82_9SAUR NADH-ubiquinone oxidoreductase chain 2 (F...    33   5.4  
tr|Q3KFP8|Q3KFP8_PSEPF Phospholipid/glycerol acyltransferase OS=...    33   9.2  
tr|Q8TWY6|Q8TWY6_METKA Fe-S oxidoreductase OS=Methanopyrus kandl...    33   9.3  

>tr|Q4K8D6|Q4K8D6_PSEF5 Acyltransferase OS=Pseudomonas fluorescens
           (strain Pf-5 / ATCC BAA-477) GN=PFL_4409 PE=4 SV=1
          Length = 624

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 350 TLFTLLMWWTCTGIRASRGRHMHALTLAFIHAWFL 454
           T+F LL+WW   GI  S   H     L F HAW++
Sbjct: 304 TVFGLLLWWHSGGIPESATGHGWIEVLGFAHAWWV 338


>tr|A7XI82|A7XI82_9SAUR NADH-ubiquinone oxidoreductase chain 2
           (Fragment) OS=Uroplatus sikorae GN=ND2 PE=3 SV=1
          Length = 328

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 14  TFVCNSNTKTSE-GWRPKTPALIFCATFRAQSTLML 118
           T  C  NT T+E  WR KTP ++   TF   STLML
Sbjct: 283 TITCPPNTLTTEYKWRFKTPQMLTLTTFSIVSTLML 318


>tr|Q3KFP8|Q3KFP8_PSEPF Phospholipid/glycerol acyltransferase
           OS=Pseudomonas fluorescens (strain Pf0-1) GN=Pf01_1665
           PE=4 SV=1
          Length = 624

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +2

Query: 350 TLFTLLMWWTCTGIRASRGRHMHALTLAFIHAW 448
           T+F LL+WW   GI  S   H     L F HAW
Sbjct: 304 TVFGLLLWWHSGGIPESAVGHSWTEVLGFGHAW 336


>tr|Q8TWY6|Q8TWY6_METKA Fe-S oxidoreductase OS=Methanopyrus kandleri
           GN=MK0895 PE=4 SV=1
          Length = 457

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 23/68 (33%), Positives = 31/68 (45%)
 Frame = -3

Query: 278 PEEG*ADPLATYEWVSFEEHSVQPIIFKGVYQQEVKGDEVIPVAGCLE*SFLCATSMYFG 99
           PE+  + PL  Y+ V  +++S   + F            VI   GC      CA+S  FG
Sbjct: 162 PEDLDSLPLPAYDKVDLDQYSADSVRFV----------PVITSRGCPFRCLFCASSRIFG 211

Query: 98  P*KWRRKS 75
           P KWR KS
Sbjct: 212 P-KWRGKS 218