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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920813
Clone id YMU001_000142_A09
Library
Length 536
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000142_A09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TAGATATTACCTGCAGGTACTCTCCAGATATGGCAGCAAAAGAAGGACCATCGACTTTAG
AATTTGAGGGACACGATCAAGTTGATTTGAAACATTTGAAACGGCTTAGCACCAATAATC
ATAGTATCGGAGTCTATTGATGGGAAGATAGAAACATCAAAGATCTTCTATGAACTTCTC
ATGCCAAATCAGGACAATTAACACTCATGAAGATCATCTGTATCTTCATAACAAAGACAA
GGATTCAGTAGATCTACCAACCTACCTATTTAGGGATTGTCATAACAATAACTTTGTTAT
GATGAGTCCTGAGGAGGTAAAACAAACCAAATACCAAGGGTATTCCATAAGAGATTGGAT
ATTGGGCCAAGGACCAGAAACTATTCCAAGAGAGAGGAACTCCACAAGAGATATTTTGGG
AGCAATGTGAAAAAACCCAACCTACCTCATCACAAAGAATACCACGTGACACTAAAGCTA
GTCTAGATCTACATGAGTCACTATTTCCAACAGATTGGTTTGAAGGACCCGGGACA
■■Homology search results ■■ -
sp_hit_id Q21MH2
Definition sp|Q21MH2|MRAY_SACD2 Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)
Align length 38
Score (bit) 32.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920813|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_A09.
         (536 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q21MH2|MRAY_SACD2 Phospho-N-acetylmuramoyl-pentapeptide-trans...    32   1.9  
sp|Q8AA39|SYFB_BACTN Phenylalanyl-tRNA synthetase beta chain OS=...    31   3.3  
sp|Q6FKD4|PHO85_CANGA Negative regulator of the PHO system OS=Ca...    31   3.3  
sp|Q64T65|SYFB_BACFR Phenylalanyl-tRNA synthetase beta chain OS=...    30   5.7  
sp|Q5LC76|SYFB_BACFN Phenylalanyl-tRNA synthetase beta chain OS=...    30   5.7  
sp|Q0ACQ9|CH60_ALHEH 60 kDa chaperonin OS=Alkalilimnicola ehrlic...    30   5.7  
sp|Q5XIC1|GMPPA_RAT Mannose-1-phosphate guanyltransferase alpha ...    30   7.4  
sp|B0CM52|GMPPA_PAPAN Mannose-1-phosphate guanyltransferase alph...    30   7.4  
sp|Q922H4|GMPPA_MOUSE Mannose-1-phosphate guanyltransferase alph...    30   7.4  
sp|Q96IJ6|GMPPA_HUMAN Mannose-1-phosphate guanyltransferase alph...    30   7.4  

>sp|Q21MH2|MRAY_SACD2
           Phospho-N-acetylmuramoyl-pentapeptide-transferase
           OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 /
           DSM 17024) GN=mraY PE=3 SV=1
          Length = 360

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -2

Query: 445 VGWV--FSHCSQNISCGVPLSWNSFW-SLAQYPISYGI 341
           VGWV  +    Q  S G+P  W  FW SLA + ++YG+
Sbjct: 111 VGWVDDYRKVVQKNSKGLPAKWKYFWQSLAGFTVAYGL 148


>sp|Q8AA39|SYFB_BACTN Phenylalanyl-tRNA synthetase beta chain
           OS=Bacteroides thetaiotaomicron GN=pheT PE=3 SV=1
          Length = 820

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 16/68 (23%), Positives = 33/68 (48%)
 Frame = +2

Query: 167 SMNFSCQIRTINTHEDHLYLHNKDKDSVDLPTYLFRDCHNNNFVMMSPEEVKQTKYQGYS 346
           S + +C  +T+         HN ++ + DL  + F +C+  +    +PE+V  T  + Y 
Sbjct: 555 SADLNCMRQTLLFGGLESIAHNANRKNADLKFFEFGNCYYFDADKKNPEKVLATYSEDYH 614

Query: 347 IRDWILGQ 370
           +  W+ G+
Sbjct: 615 LGLWVTGK 622


>sp|Q6FKD4|PHO85_CANGA Negative regulator of the PHO system
           OS=Candida glabrata GN=PHO85 PE=3 SV=1
          Length = 302

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +3

Query: 381 LFQERGTPQEIFWE---QCEKTQPTSSQRIPRDTKASL 485
           +F + GTP E  W       K  P   QR+P+D KA L
Sbjct: 220 IFDKMGTPNETTWPGVTSLPKYNPNFQQRLPKDLKAEL 257


>sp|Q64T65|SYFB_BACFR Phenylalanyl-tRNA synthetase beta chain
           OS=Bacteroides fragilis GN=pheT PE=3 SV=1
          Length = 820

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 15/68 (22%), Positives = 33/68 (48%)
 Frame = +2

Query: 167 SMNFSCQIRTINTHEDHLYLHNKDKDSVDLPTYLFRDCHNNNFVMMSPEEVKQTKYQGYS 346
           S + +C  +T+         HN ++ + DL  + F +C++ +    +PE+V     + Y 
Sbjct: 555 SADLNCMRQTLLFGGLESIAHNANRKNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYH 614

Query: 347 IRDWILGQ 370
           +  W+ G+
Sbjct: 615 LGLWVTGK 622


>sp|Q5LC76|SYFB_BACFN Phenylalanyl-tRNA synthetase beta chain
           OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)
           GN=pheT PE=3 SV=1
          Length = 820

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 15/68 (22%), Positives = 33/68 (48%)
 Frame = +2

Query: 167 SMNFSCQIRTINTHEDHLYLHNKDKDSVDLPTYLFRDCHNNNFVMMSPEEVKQTKYQGYS 346
           S + +C  +T+         HN ++ + DL  + F +C++ +    +PE+V     + Y 
Sbjct: 555 SADLNCMRQTLLFGGLESIAHNANRKNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYH 614

Query: 347 IRDWILGQ 370
           +  W+ G+
Sbjct: 615 LGLWVTGK 622


>sp|Q0ACQ9|CH60_ALHEH 60 kDa chaperonin OS=Alkalilimnicola ehrlichei
           (strain MLHE-1) GN=groL PE=3 SV=1
          Length = 553

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +1

Query: 46  DHRL*NLRDTIKLI*NI*NGLAPIIIVSESIDGK 147
           D ++ N+RD + L+ N+     P++I+SE I+G+
Sbjct: 225 DKKISNIRDLLPLLENVAKANKPLLIISEDIEGE 258


>sp|Q5XIC1|GMPPA_RAT Mannose-1-phosphate guanyltransferase alpha
           OS=Rattus norvegicus GN=Gmppa PE=2 SV=1
          Length = 420

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +2

Query: 134 LLMGR*KHQRSSMNFSCQIRTINTHEDHLYLHNKDKDSVDLPTYLFRDCHNNNFVMMSPE 313
           LL+G   ++  S+N+ C +    THE    LH  +K     P+    D  N    + SPE
Sbjct: 138 LLLGTTANRTQSLNYGCIVENPQTHE---VLHYVEK-----PSTFISDIINCGIYLFSPE 189

Query: 314 EVK 322
            +K
Sbjct: 190 ALK 192


>sp|B0CM52|GMPPA_PAPAN Mannose-1-phosphate guanyltransferase alpha
           OS=Papio anubis GN=GMPPA PE=3 SV=1
          Length = 420

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +2

Query: 134 LLMGR*KHQRSSMNFSCQIRTINTHEDHLYLHNKDKDSVDLPTYLFRDCHNNNFVMMSPE 313
           LL+G   ++  S+N+ C +    THE    LH  +K     P+    D  N    + SPE
Sbjct: 138 LLLGTTANRTQSLNYGCIVENPQTHE---VLHYVEK-----PSTFISDIINCGIYLFSPE 189

Query: 314 EVK 322
            +K
Sbjct: 190 ALK 192


>sp|Q922H4|GMPPA_MOUSE Mannose-1-phosphate guanyltransferase alpha
           OS=Mus musculus GN=Gmppa PE=2 SV=1
          Length = 420

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +2

Query: 134 LLMGR*KHQRSSMNFSCQIRTINTHEDHLYLHNKDKDSVDLPTYLFRDCHNNNFVMMSPE 313
           LL+G   ++  S+N+ C +    THE    LH  +K     P+    D  N    + SPE
Sbjct: 138 LLLGTTANRTQSLNYGCIVENPQTHE---VLHYVEK-----PSTFISDIINCGIYLFSPE 189

Query: 314 EVK 322
            +K
Sbjct: 190 ALK 192


>sp|Q96IJ6|GMPPA_HUMAN Mannose-1-phosphate guanyltransferase alpha
           OS=Homo sapiens GN=GMPPA PE=1 SV=1
          Length = 420

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +2

Query: 134 LLMGR*KHQRSSMNFSCQIRTINTHEDHLYLHNKDKDSVDLPTYLFRDCHNNNFVMMSPE 313
           LL+G   ++  S+N+ C +    THE    LH  +K     P+    D  N    + SPE
Sbjct: 138 LLLGTTANRTQSLNYGCIVENPQTHE---VLHYVEK-----PSTFISDIINCGIYLFSPE 189

Query: 314 EVK 322
            +K
Sbjct: 190 ALK 192
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920813|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_A09.
         (536 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******