BP920814
Clone id YMU001_000142_A10
Library
Length 448
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000142_A10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTTTTTTTTTTTTTGTGTCAAAAACCCATCCAGAGAAACAAGTAAAGACGAGCACTACAA
CAGCCTTTGGAGGCTTCTATATTCACATAGCTTCTTGATCAGGGCATCAAGTAAATTAGC
CTGAAAACCCGCAAGAACCTACTGACTTCTACAAAGAAAACCTGCAACTGCAAAATTGGT
GCCCTCAGATGGCAGTCTAGACTCCTAGTATTCCATACAAGTATCTGGTATGAGAATGTG
CATGGATATACAAAACTTGGTAGATGCCCATAATCGATAGCATCCGCAAGCCCACATATA
GGTCGACAGAAAATGGTTAGTAAGATTAGTTGTCATAGAGCTATTGTCAGCTCCACATCT
TCAATAATATAGATGAAAATCCTTCAGCAATCAGGTAGGCCCACGTGTAAAAATATGTTC
AGAAACATGTGGGTCACCCACAATTACT
■■Homology search results ■■ -
sp_hit_id O93512
Definition sp|O93512|GFRA4_CHICK GDNF family receptor alpha-4 OS=Gallus gallus
Align length 50
Score (bit) 28.9
E-value 9.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920814|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_A10.
(434 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O93512|GFRA4_CHICK GDNF family receptor alpha-4 OS=Gallus gal... 29 9.6

>sp|O93512|GFRA4_CHICK GDNF family receptor alpha-4 OS=Gallus gallus
GN=GFRA4 PE=2 SV=1
Length = 431

Score = 28.9 bits (63), Expect = 9.6
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -2

Query: 346 RCGADNSSMTTNLTNHFLSTYMWACGCYRLWASTKFCISMHILIPDTCME 197
+ G D + + LS+ ++ C C R K C+S++ I T ME
Sbjct: 57 KLGPDAKNQCRSTVTALLSSQLYGCKCKRGMKKEKHCLSVYWSIHHTLME 106


tr_hit_id A4HB33
Definition tr|A4HB33|A4HB33_LEIBR Putative uncharacterized protein OS=Leishmania braziliensis
Align length 58
Score (bit) 35.8
E-value 1.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920814|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_A10.
(434 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A4HB33|A4HB33_LEIBR Putative uncharacterized protein OS=Leish... 36 1.1
tr|A0E8V4|A0E8V4_PARTE Chromosome undetermined scaffold_83, whol... 33 7.1
tr|Q3I6S4|Q3I6S4_9ARAC NADH-ubiquinone oxidoreductase chain 1 (F... 33 9.3
tr|Q3I6Q1|Q3I6Q1_9ARAC NADH-ubiquinone oxidoreductase chain 1 (F... 33 9.3

>tr|A4HB33|A4HB33_LEIBR Putative uncharacterized protein
OS=Leishmania braziliensis GN=LbrM20_V2.2720 PE=4 SV=1
Length = 252

Score = 35.8 bits (81), Expect = 1.1
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -2

Query: 373 LKDFHLYY*RCGADNSSMTTNLTNHFLSTYMWACGCYRLWASTKF--CISMHILIPDT 206
LK H+YY +D S + N H L T W C ++ STKF C+ H + P++
Sbjct: 134 LKTRHVYY--ANSDESQVQWNPPTHELDTVYWYCSRCQVMISTKFRECLLCHSIRPES 189


>tr|A0E8V4|A0E8V4_PARTE Chromosome undetermined scaffold_83, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00024452001 PE=4 SV=1
Length = 426

Score = 33.1 bits (74), Expect = 7.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1

Query: 106 PENPQEPTDFYKENLQLQNWCPQMAV*TPSIPYKYL 213
P EPT+F++ + +Q W P + T +PY Y+
Sbjct: 319 PTEINEPTEFFQGEIYIQAWAPASSTETRLVPYDYV 354


>tr|Q3I6S4|Q3I6S4_9ARAC NADH-ubiquinone oxidoreductase chain 1
(Fragment) OS=Alopecosa kochi GN=NADH1 PE=3 SV=1
Length = 184

Score = 32.7 bits (73), Expect = 9.3
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = -3

Query: 264 IDYGHLPSFVYPCTFSYQILV--WNTRSLDCHLRAPILQLQVFFVEVSRFLRVFRLIYLM 91
I + L F+ T Y IL+ W+T S CHL + Q+ EVS F+ +F L+ L+
Sbjct: 94 IKHNLLMFFILSSTSVYFILLIGWSTNSKYCHLGSIRSVAQMISYEVSFFMIIFFLV-LI 152

Query: 90 P*SRSYVNIEASKGCCSARLYLF 22
S S+ +E S+ A +Y F
Sbjct: 153 SQSYSFTQMEESQ----AFMYFF 171


>tr|Q3I6Q1|Q3I6Q1_9ARAC NADH-ubiquinone oxidoreductase chain 1
(Fragment) OS=Lycosa bicolor GN=NADH1 PE=3 SV=1
Length = 184

Score = 32.7 bits (73), Expect = 9.3
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = -3

Query: 276 LADAIDYGH--LPSFVYPCTFSYQILV--WNTRSLDCHLRAPILQLQVFFVEVSRFLRVF 109
L+ ID H L F+ T Y IL+ W+T S CHL + Q+ EVS F+ +
Sbjct: 88 LSSLIDIKHNLLMFFILSSTSVYFILLIGWSTNSKYCHLGSIRSVAQMISYEVSFFMIIL 147

Query: 108 RLIYLMP*SRSYVNIEASK 52
L+ L+ S S+ +E S+
Sbjct: 148 FLV-LLSQSYSFTQVEESQ 165