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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920828
Clone id YMU001_000142_C02
Library
Length 443
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000142_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAACTAATAAATACTTCATTTGAATTACTTGAAGACCAAAGGACATCATATCCAAACTGG
AGTAGGCAATTACAGACAAGTCAACAGTTACAAGTAATCTGTAGCAACTAAAGTTACCCA
GGAAAAGTAATGATTTGAACGCACCCTCAGCATCAGACCATGAGCAGGCATGTCTCCTCC
CTATGTGAATGTCTGCCACCAGTATGATTGATCATGTTTCTTTGATCACCCACTAAGCAC
CCACTACCGCAGGCTCAGCTGCAGAGGGAGCAGGAGCGGAGGCAGGAGAAGCATCATCAT
CATCATCATCTTCGTCACCCCAGCCAAGGACAACAGCAGGGGGGGGATCAGGGAACGGGG
GATACACTGCCGGCTTGCGGTTCTTGTCAGAAGGGTCGTGCTTCTTGGGACGAGTCTTAT
TATGGTGAGCCGTGCATTTCTTC
■■Homology search results ■■ -
sp_hit_id P11892
Definition sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pisum sativum
Align length 23
Score (bit) 36.6
E-value 0.048
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920828|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_C02.
         (443 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pi...    37   0.048
sp|Q9FKP0|PSRP6_ARATH 50S ribosomal protein 6, chloroplastic OS=...    36   0.082
sp|P31041|CD28_MOUSE T-cell-specific surface glycoprotein CD28 O...    31   2.6  
sp|P31042|CD28_RAT T-cell-specific surface glycoprotein CD28 OS=...    29   7.7  

>sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pisum
           sativum GN=PSRP6 PE=3 SV=1
          Length = 104

 Score = 36.6 bits (83), Expect = 0.048
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = -2

Query: 442 KKCTAHHNKTRPKKHDPSDKNRK 374
           KK TAHH KTRP+K   SD+NRK
Sbjct: 46  KKSTAHHMKTRPRKSRLSDRNRK 68


>sp|Q9FKP0|PSRP6_ARATH 50S ribosomal protein 6, chloroplastic
           OS=Arabidopsis thaliana GN=PSRP6 PE=3 SV=1
          Length = 106

 Score = 35.8 bits (81), Expect = 0.082
 Identities = 16/23 (69%), Positives = 16/23 (69%)
 Frame = -2

Query: 442 KKCTAHHNKTRPKKHDPSDKNRK 374
           KK TAHH KTRPKK  P D  RK
Sbjct: 46  KKSTAHHRKTRPKKTQPWDIKRK 68


>sp|P31041|CD28_MOUSE T-cell-specific surface glycoprotein CD28
           OS=Mus musculus GN=Cd28 PE=2 SV=1
          Length = 218

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 190 IHIGRRHACSWSDAEGAFKSLLFL-GNFSCYRLLVTVDLSVI 68
           IHI  +H C    +   F +L+ + G   CY LLVTV L VI
Sbjct: 134 IHIKEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVI 175


>sp|P31042|CD28_RAT T-cell-specific surface glycoprotein CD28
           OS=Rattus norvegicus GN=Cd28 PE=2 SV=1
          Length = 218

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 190 IHIGRRHACSWSDAEGAFKSLLFL-GNFSCYRLLVTVDLSVI 68
           IHI  +H C    +   F  L+ + G   CY LLVTV L +I
Sbjct: 134 IHIKEKHLCHAQTSPKLFWPLVVVAGVLLCYGLLVTVTLCII 175
tr_hit_id B8LPD4
Definition tr|B8LPD4|B8LPD4_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 23
Score (bit) 44.7
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920828|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_C02.
         (443 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LPD4|B8LPD4_PICSI Putative uncharacterized protein OS=Picea...    45   0.002
tr|A9SG03|A9SG03_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.098
tr|A4S2B2|A4S2B2_OSTLU Predicted protein OS=Ostreococcus lucimar...    38   0.22 
tr|B7FHD4|B7FHD4_MEDTR Putative uncharacterized protein OS=Medic...    37   0.37 
tr|A9PFZ3|A9PFZ3_POPTR Putative uncharacterized protein OS=Popul...    35   1.4  
tr|Q2R2R2|Q2R2R2_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    35   2.4  
tr|A3CC95|A3CC95_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.4  

>tr|B8LPD4|B8LPD4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 137

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 19/23 (82%), Positives = 19/23 (82%)
 Frame = -2

Query: 442 KKCTAHHNKTRPKKHDPSDKNRK 374
           KK TAHH KTRPKKH P DKNRK
Sbjct: 60  KKATAHHVKTRPKKHQPYDKNRK 82


>tr|A9SG03|A9SG03_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_164709 PE=4 SV=1
          Length = 315

 Score = 39.3 bits (90), Expect = 0.098
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = -2

Query: 442 KKCTAHHNKTRPKKHDPSDKNRK 374
           KK TA HNKTRPKK +P DKNR+
Sbjct: 44  KKSTAGHNKTRPKKSNPYDKNRQ 66


>tr|A4S2B2|A4S2B2_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_33388 PE=4 SV=1
          Length = 56

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 16/23 (69%), Positives = 17/23 (73%)
 Frame = -2

Query: 442 KKCTAHHNKTRPKKHDPSDKNRK 374
           KK T  H  TRPKKH PSD+NRK
Sbjct: 13  KKATKGHTDTRPKKHRPSDRNRK 35


>tr|B7FHD4|B7FHD4_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=4 SV=1
          Length = 104

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = -2

Query: 442 KKCTAHHNKTRPKKHDPSDKNRK 374
           KK TAHH KTRP+K   SD+NRK
Sbjct: 45  KKSTAHHMKTRPRKSSLSDRNRK 67


>tr|A9PFZ3|A9PFZ3_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 123

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = -2

Query: 442 KKCTAHHNKTRPKKHDPSDKNRK 374
           KK TAHH KTRP+K  P D  RK
Sbjct: 54  KKATAHHRKTRPRKSQPWDIKRK 76


>tr|Q2R2R2|Q2R2R2_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=Os11g0550800 PE=2 SV=2
          Length = 127

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -2

Query: 442 KKCTAHHNKTRPKKHDPSDKNRK 374
           KK T HH KTRPKK  P D+ R+
Sbjct: 49  KKATKHHMKTRPKKSQPWDRKRR 71


>tr|A3CC95|A3CC95_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_032917 PE=4 SV=1
          Length = 374

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -2

Query: 442 KKCTAHHNKTRPKKHDPSDKNRK 374
           KK T HH KTRPKK  P D+ R+
Sbjct: 49  KKATKHHMKTRPKKSQPWDRKRR 71