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NBDC - LSDB Archive
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BP920829
Clone id YMU001_000142_C03
Library
Length 301
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000142_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGCAGGTACTCCCCTCTTTGTCGCTTCCGATTGTGGTGATGACCAATGCTGTCTCTGCT
GTGATATCTTTTCTTATTGTAAGAAGCAATAGGCTCTCCTTGAAACCTTCCGTACCCATC
CCTACTGCAGTCAGAATGAAACAAATTGTTGTGCAATCCCTCGTTAATGTTGGATGTGCA
TGCAAAGCTATTGTCCCTTCGTATAATCAACTCCTGCTTTTCATCGAGGCATTCACCGTT
ATCCTCTACCTGCATGCAGTCAGACTTTGATGGATTGAAACCAGAGTCACCACATCCCTT
T
■■Homology search results ■■ -
sp_hit_id Q9TU53
Definition sp|Q9TU53|CUBN_CANFA Cubilin OS=Canis familiaris
Align length 79
Score (bit) 34.7
E-value 0.15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920829|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_C03.
         (301 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9TU53|CUBN_CANFA Cubilin OS=Canis familiaris GN=CUBN PE=1 SV=1     35   0.15 
sp|Q62806|ZN148_RAT Zinc finger protein 148 OS=Rattus norvegicus...    32   0.76 
sp|Q61624|ZN148_MOUSE Zinc finger protein 148 OS=Mus musculus GN...    32   0.76 
sp|Q6NV12|S20AA_DANRE Sodium-dependent phosphate transporter 1-A...    32   0.99 
sp|O60494|CUBN_HUMAN Cubilin OS=Homo sapiens GN=CUBN PE=1 SV=3         32   1.3  
sp|Q9DG67|RA54B_CHICK DNA repair and recombination protein RAD54...    31   2.2  
sp|Q55DP9|MYBP_DICDI Myb-like protein P OS=Dictyostelium discoid...    31   2.2  
sp|B4JUG8|JUPIT_DROGR Microtubule-associated protein Jupiter OS=...    31   2.2  
sp|Q54P47|NDRC_DICDI Probable serine/threonine-protein kinase nd...    30   3.8  
sp|A4QTE3|MKAR_MAGGR 3-ketoacyl-CoA reductase OS=Magnaporthe gri...    30   4.9  
sp|B4M5L0|JUPIT_DROVI Microtubule-associated protein Jupiter OS=...    29   6.4  
sp|Q5U231|ZFR_XENTR Zinc finger RNA-binding protein OS=Xenopus t...    29   8.4  

>sp|Q9TU53|CUBN_CANFA Cubilin OS=Canis familiaris GN=CUBN PE=1 SV=1
          Length = 3620

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
 Frame = -2

Query: 297 GCGDSGFNPSKSDCMQVED--------NGECLDEKQELIIRRDNSFA---CTSNINEGLH 151
           G   +G+ P+   C Q+ D        NG+C++     + + ++ +A   CT NINE L 
Sbjct: 378 GYTGNGYGPN--GCAQLSDTCLSHPCLNGQCIETVSGYLCKCESGWAGINCTENINECLS 435

Query: 150 NNLFHSDCSRDGYGRFQGE 94
           N  F+     DG   F  E
Sbjct: 436 NPCFNGGTCVDGVNAFSCE 454


>sp|Q62806|ZN148_RAT Zinc finger protein 148 OS=Rattus norvegicus
           GN=Znf148 PE=2 SV=1
          Length = 794

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = +2

Query: 116 PSLLQSE*NKLLCNPSLMLDVHAKLLSLRIINSCFSSRHSPLSSTCMQSDFDGLKPESPH 295
           PSL     N+ L NP     +  ++ +   INS  S  +SPL +T  +S F  +  +S H
Sbjct: 626 PSLNFVTDNQTLPNPPAFSSIDKQVYAAMPINSFRSGMNSPLRTTPDKSHFGLIVGDSQH 685

Query: 296 PF 301
           PF
Sbjct: 686 PF 687


>sp|Q61624|ZN148_MOUSE Zinc finger protein 148 OS=Mus musculus
           GN=Znf148 PE=1 SV=2
          Length = 794

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = +2

Query: 116 PSLLQSE*NKLLCNPSLMLDVHAKLLSLRIINSCFSSRHSPLSSTCMQSDFDGLKPESPH 295
           PSL     N+ L NP     +  ++ +   INS  S  +SPL +T  +S F  +  +S H
Sbjct: 626 PSLNFVTDNQTLPNPPAFSSIDKQVYAAMPINSFRSGMNSPLRTTPDKSHFGLIVGDSQH 685

Query: 296 PF 301
           PF
Sbjct: 686 PF 687


>sp|Q6NV12|S20AA_DANRE Sodium-dependent phosphate transporter 1-A
           OS=Danio rerio GN=slc20a1a PE=2 SV=1
          Length = 652

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 23/80 (28%), Positives = 35/80 (43%)
 Frame = -2

Query: 288 DSGFNPSKSDCMQVEDNGECLDEKQELIIRRDNSFACTSNINEGLHNNLFHSDCSRDGYG 109
           DSG        + +   GEC+ E  E  IRR+NS+   +    G+H +L      +DG G
Sbjct: 365 DSGIYKDLLHKLHLAKVGECIGEPVEKPIRRNNSYTSYTMAIYGIHGSL------KDGEG 418

Query: 108 RFQGEPIASYNKKRYHSRDS 49
             +        + RY S +S
Sbjct: 419 GSRTGLDGEKRRSRYDSYNS 438


>sp|O60494|CUBN_HUMAN Cubilin OS=Homo sapiens GN=CUBN PE=1 SV=3
          Length = 3623

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
 Frame = -2

Query: 297 GCGDSGFNPSKSDCMQVED--------NGECLDEKQELIIRRDNSFA---CTSNINEGLH 151
           G   +G+ P+   C+Q+ +        NG+C+D       + D+ +    CT NINE L 
Sbjct: 381 GYTGNGYGPN--GCVQLSNICLSHPCLNGQCIDTVSGYFCKCDSGWTGVNCTENINECLS 438

Query: 150 NNLFHSDCSRDGYGRFQGE 94
           N   +     DG   F  E
Sbjct: 439 NPCLNGGTCVDGVDSFSCE 457


>sp|Q9DG67|RA54B_CHICK DNA repair and recombination protein RAD54B
           OS=Gallus gallus GN=RAD54B PE=2 SV=1
          Length = 918

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 140 NKLLCNPS-LMLDVHAKLLSLRIINSCFSSR 229
           N + C P+ L L+++ KLLS R+I+SC   R
Sbjct: 552 NIIFCQPTALQLELYRKLLSSRVISSCLQGR 582


>sp|Q55DP9|MYBP_DICDI Myb-like protein P OS=Dictyostelium discoideum
           GN=mybP PE=3 SV=1
          Length = 1448

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
 Frame = -2

Query: 282 GFNPSKSDCMQVEDNGECLDEKQELIIRRDNSFACTSNINEGLHNNLFHSDCSRD--GYG 109
           G+N  K+D  +  DN    D  +       N+   ++NIN  ++NN+ +++ +RD     
Sbjct: 38  GYNNRKNDDNRY-DNDNRNDNYRNYNNNNMNNNNNSNNINNNINNNINNNNINRDYNDNN 96

Query: 108 RFQGEPIASYNKKRYHSRDSIGHHHNRKRQR 16
           R       + N    +SRD++     R+R+R
Sbjct: 97  RNDNNNNNNNNNNNNNSRDTVAPGRERERER 127


>sp|B4JUG8|JUPIT_DROGR Microtubule-associated protein Jupiter
           OS=Drosophila grimshawi GN=Jupiter PE=3 SV=1
          Length = 207

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
 Frame = -2

Query: 207 IIRRDNSFACTSNINEGLHNNLFHSDCSR------DGYGRFQGEPIASYNKKRYHSRDSI 46
           I   D   A  +N+ +G H   F  D  R      D Y R  GEP       + H + SI
Sbjct: 53  IFSADKDAAQKNNVRQGAHRFYFIGDAPRRGQKPVDSYSRLFGEPARPITPGKNHMKSSI 112

Query: 45  --GHHHNRKRQ 19
             G + N  +Q
Sbjct: 113 PFGQNTNAAQQ 123


>sp|Q54P47|NDRC_DICDI Probable serine/threonine-protein kinase ndrC
            OS=Dictyostelium discoideum GN=ndrC PE=3 SV=1
          Length = 1335

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
 Frame = -2

Query: 279  FNPSKSDCMQVEDNGECLDEKQELIIRRDNSFA--CTSNINEGLHNNLFHSDCSRDGYGR 106
            F   KS  + +  + E     Q L     N+++   ++N N  LHNN  H      GY  
Sbjct: 1094 FTYRKSSALSLSMSSEIA---QSLNYNNGNTYSNYTSNNNNNNLHNNQIHEKNGNSGYNH 1150

Query: 105  FQGEPIASYNKKRY------HSRDSIGHHHNRKRQRGEYLQ 1
            F  + I   N+ +        S  SIG     K+ R + LQ
Sbjct: 1151 FHFDSIEQQNQYQLSLLSPNSSDKSIGMIQYIKKFRYQQLQ 1191


>sp|A4QTE3|MKAR_MAGGR 3-ketoacyl-CoA reductase OS=Magnaporthe grisea
           GN=MGG_05096 PE=3 SV=1
          Length = 331

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 20/79 (25%), Positives = 35/79 (44%)
 Frame = +1

Query: 52  VSAVISFLIVRSNRLSLKPSVPIPTAVRMKQIVVQSLVNVGCACKAIVPSYNQLLLFIEA 231
           V  V+S+LIV +     +PS  +PT    +  V  +L  +GCA + +  +Y         
Sbjct: 234 VHLVLSYLIVSAMSKVRRPSAMVPTP---RAFVRSALGKIGCATQNVAYTYTP------- 283

Query: 232 FTVILYLHAVRL*WIETRV 288
                + HA+   W+E  +
Sbjct: 284 ----WWSHAIMQWWVENTI 298
tr_hit_id Q69P53
Definition tr|Q69P53|Q69P53_ORYSJ Putative uncharacterized protein OJ1740_D06.28 OS=Oryza sativa subsp. japonica
Align length 43
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920829|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_C03.
         (301 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q69P53|Q69P53_ORYSJ Putative uncharacterized protein OJ1740_D...    33   5.4  
tr|A8BS34|A8BS34_GIALA Actin OS=Giardia lamblia ATCC 50803 GN=GL...    33   7.0  
tr|B0RES2|B0RES2_CLAMS Putative oligopeptide ABC transporter int...    33   9.1  
tr|A5CMG8|A5CMG8_CLAM3 Putative peptide ABC transporter, permeas...    33   9.1  
tr|Q8IJM3|Q8IJM3_PLAF7 Putative uncharacterized protein OS=Plasm...    33   9.1  
tr|Q2WBY6|Q2WBY6_PLADU Notch protein (Fragment) OS=Platynereis d...    33   9.1  

>tr|Q69P53|Q69P53_ORYSJ Putative uncharacterized protein
           OJ1740_D06.28 OS=Oryza sativa subsp. japonica
           GN=OJ1740_D06.28 PE=4 SV=1
          Length = 172

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 138 HSDCS-RDGYGRFQGEPIASYNKKRYHSRDSIGHHHNRKRQRG 13
           HSD S R G G+F   P+  Y  +   + ++  HHH R+ QRG
Sbjct: 43  HSDVSVRHGNGKF---PVGDYTTRPASADENFPHHHQREMQRG 82


>tr|A8BS34|A8BS34_GIALA Actin OS=Giardia lamblia ATCC 50803
           GN=GL50803_15113 PE=3 SV=1
          Length = 467

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 149 LCNPSLMLDVHAKLLSLRIINSCFSSRHSPLSSTCMQSDFDGLKPE 286
           LC PS +   H +LL   I+  CF + H P+    MQ D+ G++ E
Sbjct: 270 LCGPSFVA-FHKQLLLSEIVQFCFQASHKPMD---MQLDYRGMQKE 311


>tr|B0RES2|B0RES2_CLAMS Putative oligopeptide ABC transporter
           integral membrane protein OS=Clavibacter michiganensis
           subsp. sepedonicus (strain ATCC 33113 / JCM 9667)
           GN=CMS0799 PE=3 SV=1
          Length = 341

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 21/72 (29%), Positives = 43/72 (59%)
 Frame = +1

Query: 4   QVLPSLSLPIVVMTNAVSAVISFLIVRSNRLSLKPSVPIPTAVRMKQIVVQSLVNVGCAC 183
           ++LPS++LP++V+T A++A I    +RS+ + +  S  + TA  +K +  + +V      
Sbjct: 178 ELLPSVALPVIVLTLAMAAYI-VRTMRSSTIDVMASEFVTTA-ELKGLTTRQVVWRHAVP 235

Query: 184 KAIVPSYNQLLL 219
            A++P+ N + L
Sbjct: 236 SALLPTLNVVAL 247


>tr|A5CMG8|A5CMG8_CLAM3 Putative peptide ABC transporter, permease
           component OS=Clavibacter michiganensis subsp.
           michiganensis (strain NCPPB 382) GN=CMM_0232 PE=3 SV=1
          Length = 339

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 21/72 (29%), Positives = 43/72 (59%)
 Frame = +1

Query: 4   QVLPSLSLPIVVMTNAVSAVISFLIVRSNRLSLKPSVPIPTAVRMKQIVVQSLVNVGCAC 183
           ++LPS++LP++V+T A++A I    +RS+ + +  S  + TA  +K +  + +V      
Sbjct: 178 ELLPSVALPVIVLTLAMAAYI-VRTMRSSTIDVMASEFVTTA-ELKGLTTRQVVWRHAVP 235

Query: 184 KAIVPSYNQLLL 219
            A++P+ N + L
Sbjct: 236 SALLPTLNVVAL 247


>tr|Q8IJM3|Q8IJM3_PLAF7 Putative uncharacterized protein
           OS=Plasmodium falciparum (isolate 3D7) GN=PF10_0171 PE=4
           SV=1
          Length = 971

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
 Frame = -2

Query: 267 KSDCMQVEDNGEC-----LDEKQELIIRRDNSFACTSNINEGLHNNLFHSDCSRDGYGRF 103
           K DC+ +++NG C     +D+   +    DN++   +NI++  +NN+ ++D       ++
Sbjct: 167 KQDCIDIKENGNCDDNNNIDDNNNI---DDNNYIDDNNIDDDDNNNVDNADNHHGKENKY 223

Query: 102 QGEPIASYNKKRYHSRDSIGHHHN 31
           + +     N    H  D +  H N
Sbjct: 224 KKK-----NSTISHDNDKMDEHAN 242


>tr|Q2WBY6|Q2WBY6_PLADU Notch protein (Fragment) OS=Platynereis
           dumerilii GN=notch PE=2 SV=1
          Length = 2030

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
 Frame = -2

Query: 246 EDNGECLDEKQELIIRRDNSF---ACTSNINEGLHNNLFHSDCSRDGYGRFQGEPIASYN 76
           ++ G CLD+    + R    +    C SNINE   +   H     DG  RF  E    Y 
Sbjct: 632 QNGGTCLDQINSFLCRCPRGYYDYMCASNINECESSPCMHGGRCIDGINRFDCECPIGYE 691

Query: 75  KKRYHSRDSI 46
             R  S +++
Sbjct: 692 GYRCQSEENL 701