NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920830
Clone id YMU001_000142_C04
Library
Length 418
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000142_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGGCAATTACAGACAAGTCAACAGTTACAAGTAATCTGTAGCAACTAAAGTTACCCAGGA
AAAGTAATGATTTGAACGCACCCTCAGCATCAGACCATGAGCAGGCATGTCTCCTCCCTA
TGTGAATGTCTGCCACCAGTATGATTGATCATGTTTCTTTGATCACCCACTAAGCACCCA
CTACCGCAGGCTCAGCTGCAGAGGGAGCAGGAGCGGAGGCAGGAGAAGCATCATCATCAT
CATCATCTTCGTCACCCCAGCCAAGGACAACAGCAGGGGGGGGATCAGGGAACGGCGGAT
ACACTGCCGGCTTGCGGTTCTTGTCAGAAGGGTTGTGCTTCTTGGGACGAGTCTTATTAT
GGTGAGCCGTGCATTTCTTCTGAGGCCGCGATGAGCACTCTACAGGAAGGAATCCAGC
■■Homology search results ■■ -
sp_hit_id P11892
Definition sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pisum sativum
Align length 35
Score (bit) 55.1
E-value 1.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920830|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_C04.
         (418 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pi...    55   1e-07
sp|Q9FKP0|PSRP6_ARATH 50S ribosomal protein 6, chloroplastic OS=...    52   9e-07
sp|P82411|PSRP6_SPIOL 50S ribosomal protein 6, chloroplastic OS=...    47   3e-05
sp|P31041|CD28_MOUSE T-cell-specific surface glycoprotein CD28 O...    31   2.2  
sp|P31042|CD28_RAT T-cell-specific surface glycoprotein CD28 OS=...    29   6.4  

>sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pisum
           sativum GN=PSRP6 PE=3 SV=1
          Length = 104

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 25/35 (71%), Positives = 28/35 (80%)
 Frame = -1

Query: 415 GFLPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 311
           G L +ECSSRPQKK TAHH KTRP+K   SD+NRK
Sbjct: 34  GGLLIECSSRPQKKSTAHHMKTRPRKSRLSDRNRK 68


>sp|Q9FKP0|PSRP6_ARATH 50S ribosomal protein 6, chloroplastic
           OS=Arabidopsis thaliana GN=PSRP6 PE=3 SV=1
          Length = 106

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 23/31 (74%), Positives = 24/31 (77%)
 Frame = -1

Query: 403 VECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 311
           +ECSSRPQKK TAHH KTRPKK  P D  RK
Sbjct: 38  IECSSRPQKKSTAHHRKTRPKKTQPWDIKRK 68


>sp|P82411|PSRP6_SPIOL 50S ribosomal protein 6, chloroplastic
           OS=Spinacia oleracea GN=PSRP6 PE=1 SV=1
          Length = 116

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 20/26 (76%), Positives = 22/26 (84%)
 Frame = -1

Query: 415 GFLPVECSSRPQKKCTAHHNKTRPKK 338
           G + +ECSSRPQKK TAHH KTRPKK
Sbjct: 41  GVITIECSSRPQKKGTAHHMKTRPKK 66


>sp|P31041|CD28_MOUSE T-cell-specific surface glycoprotein CD28
           OS=Mus musculus GN=Cd28 PE=2 SV=1
          Length = 218

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 127 IHIGRRHACSWSDAEGAFKSLLFL-GNFSCYRLLVTVDLSVI 5
           IHI  +H C    +   F +L+ + G   CY LLVTV L VI
Sbjct: 134 IHIKEKHLCHTQSSPKLFWALVVVAGVLFCYGLLVTVALCVI 175


>sp|P31042|CD28_RAT T-cell-specific surface glycoprotein CD28
           OS=Rattus norvegicus GN=Cd28 PE=2 SV=1
          Length = 218

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 127 IHIGRRHACSWSDAEGAFKSLLFL-GNFSCYRLLVTVDLSVI 5
           IHI  +H C    +   F  L+ + G   CY LLVTV L +I
Sbjct: 134 IHIKEKHLCHAQTSPKLFWPLVVVAGVLLCYGLLVTVTLCII 175
tr_hit_id B8LPD4
Definition tr|B8LPD4|B8LPD4_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 33
Score (bit) 59.7
E-value 7.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920830|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_C04.
         (418 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LPD4|B8LPD4_PICSI Putative uncharacterized protein OS=Picea...    60   7e-08
tr|A9SG03|A9SG03_PHYPA Predicted protein OS=Physcomitrella paten...    58   3e-07
tr|B7FHD4|B7FHD4_MEDTR Putative uncharacterized protein OS=Medic...    55   1e-06
tr|A9PFZ3|A9PFZ3_POPTR Putative uncharacterized protein OS=Popul...    53   7e-06
tr|Q2R2R2|Q2R2R2_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    52   1e-05
tr|A3CC95|A3CC95_ORYSJ Putative uncharacterized protein OS=Oryza...    52   1e-05
tr|B6TUI7|B6TUI7_MAIZE Plastid-specific ribosomal protein 6 OS=Z...    49   1e-04
tr|B6SX84|B6SX84_MAIZE Plastid-specific ribosomal protein 6 OS=Z...    49   1e-04
tr|A7Q1S1|A7Q1S1_VITVI Chromosome chr7 scaffold_44, whole genome...    47   4e-04
tr|A4S2B2|A4S2B2_OSTLU Predicted protein OS=Ostreococcus lucimar...    40   0.044
tr|Q012C3|Q012C3_OSTTA Chromosome 09 contig 1, DNA sequence OS=O...    33   5.4  

>tr|B8LPD4|B8LPD4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 137

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 26/33 (78%), Positives = 28/33 (84%)
 Frame = -1

Query: 409 LPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 311
           L +ECSSRP+KK TAHH KTRPKKH P DKNRK
Sbjct: 50  LIIECSSRPRKKATAHHVKTRPKKHQPYDKNRK 82


>tr|A9SG03|A9SG03_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_164709 PE=4 SV=1
          Length = 315

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 26/36 (72%), Positives = 28/36 (77%)
 Frame = -1

Query: 418 AGFLPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 311
           A  L +ECSS PQKK TA HNKTRPKK NP DKNR+
Sbjct: 31  ASLLRIECSSHPQKKSTAGHNKTRPKKSNPYDKNRQ 66


>tr|B7FHD4|B7FHD4_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=4 SV=1
          Length = 104

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 25/35 (71%), Positives = 29/35 (82%)
 Frame = -1

Query: 415 GFLPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 311
           G L +ECSSRPQKK TAHH KTRP+K + SD+NRK
Sbjct: 33  GGLLIECSSRPQKKSTAHHMKTRPRKSSLSDRNRK 67


>tr|A9PFZ3|A9PFZ3_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 123

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 23/35 (65%), Positives = 26/35 (74%)
 Frame = -1

Query: 415 GFLPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 311
           G + +ECSSRPQKK TAHH KTRP+K  P D  RK
Sbjct: 42  GGMSIECSSRPQKKATAHHRKTRPRKSQPWDIKRK 76


>tr|Q2R2R2|Q2R2R2_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=Os11g0550800 PE=2 SV=2
          Length = 127

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 23/33 (69%), Positives = 25/33 (75%)
 Frame = -1

Query: 409 LPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 311
           L VECSSRPQKK T HH KTRPKK  P D+ R+
Sbjct: 39  LAVECSSRPQKKATKHHMKTRPKKSQPWDRKRR 71


>tr|A3CC95|A3CC95_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_032917 PE=4 SV=1
          Length = 374

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 23/33 (69%), Positives = 25/33 (75%)
 Frame = -1

Query: 409 LPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 311
           L VECSSRPQKK T HH KTRPKK  P D+ R+
Sbjct: 39  LAVECSSRPQKKATKHHMKTRPKKSQPWDRKRR 71


>tr|B6TUI7|B6TUI7_MAIZE Plastid-specific ribosomal protein 6 OS=Zea
           mays PE=2 SV=1
          Length = 123

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 23/33 (69%), Positives = 24/33 (72%)
 Frame = -1

Query: 409 LPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 311
           L VECSSRPQKK T HH KTRPKK  P D  R+
Sbjct: 45  LAVECSSRPQKKGTKHHMKTRPKKTQPWDIKRR 77


>tr|B6SX84|B6SX84_MAIZE Plastid-specific ribosomal protein 6 OS=Zea
           mays PE=2 SV=1
          Length = 121

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 23/33 (69%), Positives = 24/33 (72%)
 Frame = -1

Query: 409 LPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 311
           L VECSSRPQKK T HH KTRPKK  P D  R+
Sbjct: 43  LAVECSSRPQKKGTKHHMKTRPKKTQPWDIKRR 75


>tr|A7Q1S1|A7Q1S1_VITVI Chromosome chr7 scaffold_44, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028574001
           PE=4 SV=1
          Length = 108

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 21/35 (60%), Positives = 25/35 (71%)
 Frame = -1

Query: 415 GFLPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 311
           G   +ECSSRPQKK T+HH KTRP+K  P D  R+
Sbjct: 33  GAAVIECSSRPQKKGTSHHMKTRPRKTQPWDIKRR 67


>tr|A4S2B2|A4S2B2_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_33388 PE=4 SV=1
          Length = 56

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = -1

Query: 403 VECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 311
           V+ +   +KK T  H  TRPKKH PSD+NRK
Sbjct: 5   VKAARHVRKKATKGHTDTRPKKHRPSDRNRK 35