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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920833
Clone id YMU001_000142_C07
Library
Length 563
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000142_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAGCGGTCCTCAGAATAAGCAGCAGCCCAGGCAATGGGCTGTCTGCAGGCGGGAACTCAG
GCGGCTCTCTCGTCACAGTTGCTTTTCAAATACTAGTGGACCATGTTCCCACAGCTCGGT
TGTCACTTGGCTCGGTAGCAACTGTCAACAAGCTCATATGCAACACAGTCATTCGCATAA
AACGTGCTCTTGCATGTGATGCATAGCTCATGGCTTTGCACAATCCTTCTTCATGTCATG
CTTAGGAGTGCTGTCAGCTTCTACCTTTAATCAAAATCAAACGACTACCAAAGTACACCG
ACACTTCCACCAAAGTACACCGCCACTTTCTAACCGAAGGCTAAATCCACATACCTGCAT
TCAAGGCCCTCTCTAACCAAGTTGGACACCCTTAGATCTGCATTGTAGTTTCCCTTTCAA
GGTCCTCTTTAACCAAAAAAGCAGAACCCTCTGGTCTCTCAGTGTAGCTCCCCTAAAAGG
TAGTCGTAGACTAAAGTCATTAGCACACATCCTCATATCTGCATCACAAGCTCTCTCTCC
CCCCCTCCATGCATGAGTGGGGT
■■Homology search results ■■ -
sp_hit_id Q8RWU4
Definition sp|Q8RWU4|ATML1_ARATH Homeobox-leucine zipper protein MERISTEM L1 OS=Arabidopsis thaliana
Align length 43
Score (bit) 65.1
E-value 2.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920833|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_C07.
         (563 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8RWU4|ATML1_ARATH Homeobox-leucine zipper protein MERISTEM L...    65   2e-10
sp|Q93V99|PDF2_ARATH Homeobox-leucine zipper protein PROTODERMAL...    63   1e-09
sp|Q94C37|HDG2_ARATH Homeobox-leucine zipper protein HDG2 OS=Ara...    62   3e-09
sp|A3BPF2|ROC7_ORYSJ Homeobox-leucine zipper protein ROC7 OS=Ory...    59   1e-08
sp|A2YR02|ROC7_ORYSI Homeobox-leucine zipper protein ROC7 OS=Ory...    59   1e-08
sp|Q6ZAR0|ROC1_ORYSJ Homeobox-leucine zipper protein ROC1 OS=Ory...    59   1e-08
sp|Q0J9X2|ROC2_ORYSJ Homeobox-leucine zipper protein ROC2 OS=Ory...    58   3e-08
sp|Q6EPF0|ROC5_ORYSJ Homeobox-leucine zipper protein ROC5 OS=Ory...    53   9e-07
sp|Q9M2E8|HDG1_ARATH Homeobox-leucine zipper protein HDG1 OS=Ara...    52   2e-06
sp|Q0WV12|ANL2_ARATH Homeobox-leucine zipper protein ANTHOCYANIN...    51   4e-06
sp|Q69T58|ROC8_ORYSJ Homeobox-leucine zipper protein ROC8 OS=Ory...    50   6e-06
sp|Q9FX31|HDG11_ARATH Homeobox-leucine zipper protein HDG11 OS=A...    47   8e-05
sp|Q7Y0V7|ROC6_ORYSJ Homeobox-leucine zipper protein ROC6 OS=Ory...    45   2e-04
sp|Q7Y0V9|ROC4_ORYSJ Homeobox-leucine zipper protein ROC4 OS=Ory...    45   2e-04
sp|Q9LTK3|HDG7_ARATH Homeobox-leucine zipper protein HDG7 OS=Ara...    45   3e-04
sp|Q9ZV65|HDG3_ARATH Homeobox-leucine zipper protein HDG3 OS=Ara...    43   0.001
sp|Q336P2|ROC3_ORYSJ Homeobox-leucine zipper protein ROC3 OS=Ory...    40   0.008
sp|Q8L7H4|HDG4_ARATH Homeobox-leucine zipper protein HDG4 OS=Ara...    40   0.010
sp|Q9LMT8|HDG12_ARATH Homeobox-leucine zipper protein HDG12 OS=A...    40   0.010
sp|A2ZAI7|ROC3_ORYSI Homeobox-leucine zipper protein ROC3 OS=Ory...    39   0.014
sp|Q9FJS2|HDG5_ARATH Homeobox-leucine zipper protein HDG5 OS=Ara...    39   0.014
sp|Q9FFI0|HDG9_ARATH Homeobox-leucine zipper protein HDG9 OS=Ara...    35   0.20 
sp|Q9FVI6|FWA_ARATH Homeobox-leucine zipper protein HDG6 OS=Arab...    35   0.25 
sp|Q09818|YAC4_SCHPO Putative general negative regulator of tran...    32   2.8  
sp|O94933|SLIK3_HUMAN SLIT and NTRK-like protein 3 OS=Homo sapie...    31   3.7  
sp|O31087|XERC_SERMA Tyrosine recombinase xerC OS=Serratia marce...    30   6.3  
sp|Q9Z138|ROR2_MOUSE Tyrosine-protein kinase transmembrane recep...    30   6.3  

>sp|Q8RWU4|ATML1_ARATH Homeobox-leucine zipper protein MERISTEM L1
           OS=Arabidopsis thaliana GN=ATML1 PE=2 SV=1
          Length = 762

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 35/43 (81%), Positives = 37/43 (86%)
 Frame = +3

Query: 72  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIKRALACD 200
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK ALACD
Sbjct: 718 LTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIKAALACD 760


>sp|Q93V99|PDF2_ARATH Homeobox-leucine zipper protein PROTODERMAL
           FACTOR 2 OS=Arabidopsis thaliana GN=PDF2 PE=2 SV=1
          Length = 743

 Score = 62.8 bits (151), Expect = 1e-09
 Identities = 33/43 (76%), Positives = 37/43 (86%)
 Frame = +3

Query: 72  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIKRALACD 200
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK A++CD
Sbjct: 696 LTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIKAAVSCD 738


>sp|Q94C37|HDG2_ARATH Homeobox-leucine zipper protein HDG2
           OS=Arabidopsis thaliana GN=HDG2 PE=2 SV=1
          Length = 721

 Score = 61.6 bits (148), Expect = 3e-09
 Identities = 31/43 (72%), Positives = 37/43 (86%)
 Frame = +3

Query: 72  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIKRALACD 200
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK +++C+
Sbjct: 677 LTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASMSCE 719


>sp|A3BPF2|ROC7_ORYSJ Homeobox-leucine zipper protein ROC7 OS=Oryza
           sativa subsp. japonica GN=ROC7 PE=2 SV=1
          Length = 749

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 32/43 (74%), Positives = 35/43 (81%)
 Frame = +3

Query: 72  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIKRALACD 200
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK A+  D
Sbjct: 698 LTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAITGD 740


>sp|A2YR02|ROC7_ORYSI Homeobox-leucine zipper protein ROC7 OS=Oryza
           sativa subsp. indica GN=ROC7 PE=3 SV=1
          Length = 749

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 32/43 (74%), Positives = 35/43 (81%)
 Frame = +3

Query: 72  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIKRALACD 200
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK A+  D
Sbjct: 698 LTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAITGD 740


>sp|Q6ZAR0|ROC1_ORYSJ Homeobox-leucine zipper protein ROC1 OS=Oryza
           sativa subsp. japonica GN=ROC1 PE=2 SV=1
          Length = 784

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 32/44 (72%), Positives = 36/44 (81%)
 Frame = +3

Query: 72  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIKRALACDA 203
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK A+  D+
Sbjct: 738 LTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAVCRDS 781


>sp|Q0J9X2|ROC2_ORYSJ Homeobox-leucine zipper protein ROC2 OS=Oryza
           sativa subsp. japonica GN=ROC2 PE=2 SV=1
          Length = 784

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 31/41 (75%), Positives = 35/41 (85%)
 Frame = +3

Query: 72  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIKRALA 194
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK A++
Sbjct: 738 LTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAVS 778


>sp|Q6EPF0|ROC5_ORYSJ Homeobox-leucine zipper protein ROC5 OS=Oryza
           sativa subsp. japonica GN=ROC5 PE=2 SV=1
          Length = 804

 Score = 53.1 bits (126), Expect = 9e-07
 Identities = 27/44 (61%), Positives = 35/44 (79%)
 Frame = +3

Query: 72  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIKRALACDA 203
           +TVAFQILV++ PTA+L++ SV TVN LI  T+ +IK AL CDA
Sbjct: 761 LTVAFQILVNNQPTAKLTVESVETVNNLISCTIKKIKTALQCDA 804


>sp|Q9M2E8|HDG1_ARATH Homeobox-leucine zipper protein HDG1
           OS=Arabidopsis thaliana GN=HDG1 PE=2 SV=1
          Length = 808

 Score = 52.4 bits (124), Expect = 2e-06
 Identities = 27/44 (61%), Positives = 35/44 (79%)
 Frame = +3

Query: 72  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIKRALACDA 203
           +TVAFQILV+ +PTA+L++ SV TVN LI  TV +IK AL CD+
Sbjct: 764 LTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCDS 807


>sp|Q0WV12|ANL2_ARATH Homeobox-leucine zipper protein
           ANTHOCYANINLESS 2 OS=Arabidopsis thaliana GN=ANL2 PE=2
           SV=1
          Length = 802

 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 25/44 (56%), Positives = 36/44 (81%)
 Frame = +3

Query: 72  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIKRALACDA 203
           +TVAFQILV+++PTA+L++ SV TVN LI  TV +I+ AL C++
Sbjct: 759 LTVAFQILVNNLPTAKLTVESVETVNNLISCTVQKIRAALQCES 802
tr_hit_id A7PXH2
Definition tr|A7PXH2|A7PXH2_VITVI Chromosome chr12 scaffold_36, whole genome shotgun sequence OS=Vitis vinifera
Align length 43
Score (bit) 62.4
E-value 2.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920833|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_C07.
         (563 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PXH2|A7PXH2_VITVI Chromosome chr12 scaffold_36, whole genom...    62   2e-08
tr|A5C0J7|A5C0J7_VITVI Putative uncharacterized protein OS=Vitis...    62   2e-08
tr|Q8W0T5|Q8W0T5_SORBI OCL5 protein OS=Sorghum bicolor GN=S250_1...    62   3e-08
tr|B3H6Y4|B3H6Y4_ARATH Uncharacterized protein At1g05230.3 OS=Ar...    62   3e-08
tr|A7QUM2|A7QUM2_VITVI Chromosome chr10 scaffold_179, whole geno...    60   1e-07
tr|A5C6G2|A5C6G2_VITVI Putative uncharacterized protein OS=Vitis...    60   1e-07
tr|B8BBE5|B8BBE5_ORYSI Putative uncharacterized protein OS=Oryza...    59   1e-07
tr|B8BAL1|B8BAL1_ORYSI Putative uncharacterized protein OS=Oryza...    59   1e-07
tr|B8A225|B8A225_MAIZE Putative uncharacterized protein OS=Zea m...    59   1e-07
tr|B7ZWZ0|B7ZWZ0_MAIZE Putative uncharacterized protein OS=Zea m...    59   1e-07
tr|A3BQA7|A3BQA7_ORYSJ Putative uncharacterized protein OS=Oryza...    59   1e-07
tr|Q9LEE6|Q9LEE6_MAIZE OCL5 protein OS=Zea mays GN=ocl5 PE=2 SV=1      59   2e-07
tr|Q00RL2|Q00RL2_ORYSA OSIGBa0117N13.5 protein OS=Oryza sativa G...    58   3e-07
tr|B8AUT5|B8AUT5_ORYSI Putative uncharacterized protein OS=Oryza...    58   3e-07
tr|A3AXM5|A3AXM5_ORYSJ Putative uncharacterized protein OS=Oryza...    58   3e-07
tr|B7ZX75|B7ZX75_MAIZE Putative uncharacterized protein OS=Zea m...    58   4e-07
tr|B6UAR0|B6UAR0_MAIZE Putative uncharacterized protein OS=Zea m...    58   4e-07
tr|B4FYA9|B4FYA9_MAIZE Putative uncharacterized protein OS=Zea m...    58   4e-07
tr|Q9FR59|Q9FR59_PICAB Homeobox 1 OS=Picea abies GN=HB1 PE=2 SV=1      57   5e-07
tr|Q40988|Q40988_9ASPA Homeobox protein OS=Phalaenopsis sp. SM91...    57   5e-07
tr|B8AGG2|B8AGG2_ORYSI Putative uncharacterized protein OS=Oryza...    53   1e-05
tr|A3AA23|A3AA23_ORYSJ Putative uncharacterized protein OS=Oryza...    53   1e-05
tr|Q0H742|Q0H742_BRANA Baby boom interacting protein 2 (Fragment...    52   2e-05
tr|Q9XGD7|Q9XGD7_MAIZE OCL1 homeobox protein OS=Zea mays GN=ocl1...    52   2e-05
tr|Q4R0U0|Q4R0U0_MAIZE Homeobox protein OCL1 OS=Zea mays GN=OCL1...    52   2e-05
tr|Q66Q67|Q66Q67_GOSHI Homeodomain protein HOX3 OS=Gossypium hir...    52   3e-05
tr|B6SRL8|B6SRL8_MAIZE Putative uncharacterized protein OS=Zea m...    51   5e-05
tr|A7QJZ6|A7QJZ6_VITVI Chromosome undetermined scaffold_109, who...    51   5e-05
tr|A7PXZ1|A7PXZ1_VITVI Chromosome chr15 scaffold_37, whole genom...    51   5e-05
tr|A5BQ38|A5BQ38_VITVI Putative uncharacterized protein OS=Vitis...    51   5e-05

>tr|A7PXH2|A7PXH2_VITVI Chromosome chr12 scaffold_36, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026038001
           PE=3 SV=1
          Length = 725

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 32/43 (74%), Positives = 37/43 (86%)
 Frame = +3

Query: 72  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIKRALACD 200
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK A++C+
Sbjct: 681 LTVAFQILVDSVPTAKLSLGSVATVNNLIACTVDRIKAAVSCE 723


>tr|A5C0J7|A5C0J7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_013736 PE=3 SV=1
          Length = 754

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 32/43 (74%), Positives = 37/43 (86%)
 Frame = +3

Query: 72  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIKRALACD 200
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK A++C+
Sbjct: 710 LTVAFQILVDSVPTAKLSLGSVATVNNLIACTVDRIKAAVSCE 752


>tr|Q8W0T5|Q8W0T5_SORBI OCL5 protein OS=Sorghum bicolor
           GN=S250_18C08.9 PE=3 SV=1
          Length = 803

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 33/43 (76%), Positives = 36/43 (83%)
 Frame = +3

Query: 72  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIKRALACD 200
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK A+A D
Sbjct: 751 LTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAVAAD 793


>tr|B3H6Y4|B3H6Y4_ARATH Uncharacterized protein At1g05230.3
           OS=Arabidopsis thaliana GN=At1g05230 PE=4 SV=1
          Length = 719

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 31/43 (72%), Positives = 37/43 (86%)
 Frame = +3

Query: 72  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIKRALACD 200
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK +++C+
Sbjct: 675 LTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASMSCE 717


>tr|A7QUM2|A7QUM2_VITVI Chromosome chr10 scaffold_179, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00006904001
           PE=3 SV=1
          Length = 726

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 31/43 (72%), Positives = 36/43 (83%)
 Frame = +3

Query: 72  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIKRALACD 200
           +TVAFQILVD  PTA+LSLGSVATVN LI  TV RIK A++C+
Sbjct: 682 LTVAFQILVDSAPTAKLSLGSVATVNSLIKCTVERIKAAVSCE 724


>tr|A5C6G2|A5C6G2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_039239 PE=3 SV=1
          Length = 708

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 31/43 (72%), Positives = 36/43 (83%)
 Frame = +3

Query: 72  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIKRALACD 200
           +TVAFQILVD  PTA+LSLGSVATVN LI  TV RIK A++C+
Sbjct: 664 LTVAFQILVDSAPTAKLSLGSVATVNSLIKCTVERIKAAVSCE 706


>tr|B8BBE5|B8BBE5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_28071 PE=4 SV=1
          Length = 765

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 32/44 (72%), Positives = 36/44 (81%)
 Frame = +3

Query: 72  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIKRALACDA 203
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK A+  D+
Sbjct: 719 LTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAVCRDS 762


>tr|B8BAL1|B8BAL1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_27729 PE=4 SV=1
          Length = 785

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 32/43 (74%), Positives = 35/43 (81%)
 Frame = +3

Query: 72  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIKRALACD 200
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK A+  D
Sbjct: 734 LTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAITGD 776


>tr|B8A225|B8A225_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 298

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 31/41 (75%), Positives = 35/41 (85%)
 Frame = +3

Query: 72  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIKRALA 194
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK A++
Sbjct: 251 LTVAFQILVDSVPTAKLSLGSVATVNSLIARTVERIKAAVS 291


>tr|B7ZWZ0|B7ZWZ0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 672

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 31/41 (75%), Positives = 35/41 (85%)
 Frame = +3

Query: 72  VTVAFQILVDHVPTARLSLGSVATVNKLICNTVIRIKRALA 194
           +TVAFQILVD VPTA+LSLGSVATVN LI  TV RIK A++
Sbjct: 625 LTVAFQILVDSVPTAKLSLGSVATVNSLIARTVERIKAAVS 665