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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920834
Clone id YMU001_000142_C08
Library
Length 393
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000142_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CACTAATACACTTGTAGGATGTTCACATTTTGAAGAAACAGGGTGCCCTGTCCTAAAACA
GTCGACTTCCACCTCAAATACCTTATTGCTTTTCTGAGAGTCCCACTACTTGAAAAGCTT
ACTTTTAATGTGCTCCCCAAGGCATACAAAGGCACAGCATACCTTGTACACGTCTTTACA
TATGAACACAAAAGAGGTCAGATTCTTGTCTGCAGTACCAAGGATTAGAGTACGGTTTGC
CAATAGGCCACAGCAGGGTAGGATATGTGGATCTATACATACAGATCGTACCACACGTGG
ATATGTTGAAACACTACATTAAATAATCCAGCCAGGTGCCTCCCCCTGGCTCACCTATAT
AGGCCACTAGAAGGCTGCCCGACCCAGATATCC
■■Homology search results ■■ -
sp_hit_id Q08416
Definition sp|Q08416|YO044_YEAST Uncharacterized membrane protein YOR044W OS=Saccharomyces cerevisiae
Align length 49
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920834|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_C08.
         (393 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q08416|YO044_YEAST Uncharacterized membrane protein YOR044W O...    30   2.9  
sp|Q3Z259|BTUC_SHISS Vitamin B12 import system permease protein ...    30   2.9  
sp|Q7C1M5|BTUC_SHIFL Vitamin B12 import system permease protein ...    30   2.9  
sp|Q0T4S1|BTUC_SHIF8 Vitamin B12 import system permease protein ...    30   2.9  
sp|Q32FI8|BTUC_SHIDS Vitamin B12 import system permease protein ...    30   2.9  
sp|Q321G8|BTUC_SHIBS Vitamin B12 import system permease protein ...    30   2.9  
sp|Q8ZPS8|BTUC_SALTY Vitamin B12 import system permease protein ...    30   2.9  
sp|Q8Z6I5|BTUC_SALTI Vitamin B12 import system permease protein ...    30   2.9  
sp|A9N235|BTUC_SALPB Vitamin B12 import system permease protein ...    30   2.9  
sp|Q5PH87|BTUC_SALPA Vitamin B12 import system permease protein ...    30   2.9  
sp|Q57PU6|BTUC_SALCH Vitamin B12 import system permease protein ...    30   2.9  
sp|A9MFB6|BTUC_SALAR Vitamin B12 import system permease protein ...    30   2.9  
sp|Q1RB84|BTUC_ECOUT Vitamin B12 import system permease protein ...    30   2.9  
sp|P06609|BTUC_ECOLI Vitamin B12 import system permease protein ...    30   2.9  
sp|B1IPL6|BTUC_ECOLC Vitamin B12 import system permease protein ...    30   2.9  
sp|Q8FH26|BTUC_ECOL6 Vitamin B12 import system permease protein ...    30   2.9  
sp|Q0THB7|BTUC_ECOL5 Vitamin B12 import system permease protein ...    30   2.9  
sp|A1ABP7|BTUC_ECOK1 Vitamin B12 import system permease protein ...    30   2.9  
sp|A8A0Q3|BTUC_ECOHS Vitamin B12 import system permease protein ...    30   2.9  
sp|Q8X4L7|BTUC_ECO57 Vitamin B12 import system permease protein ...    30   2.9  
sp|A7ZMH9|BTUC_ECO24 Vitamin B12 import system permease protein ...    30   2.9  
sp|A8AHA4|BTUC_CITK8 Vitamin B12 import system permease protein ...    30   3.7  
sp|A1K7B5|PNP_AZOSB Polyribonucleotide nucleotidyltransferase OS...    30   4.9  
sp|O14122|CUL4_SCHPO Cullin-4 OS=Schizosaccharomyces pombe GN=cu...    30   4.9  
sp|Q8D2Y0|PNP_WIGBR Polyribonucleotide nucleotidyltransferase OS...    29   6.4  
sp|Q47D98|PNP_DECAR Polyribonucleotide nucleotidyltransferase OS...    29   6.4  
sp|Q6ABJ2|ATKA_PROAC Potassium-transporting ATPase A chain OS=Pr...    29   6.4  
sp|Q6DKG0|MAK10_RAT Protein MAK10 homolog OS=Rattus norvegicus G...    29   8.3  
sp|Q6PHQ8|MAK10_MOUSE Protein MAK10 homolog OS=Mus musculus GN=M...    29   8.3  
sp|A4WEX9|PNP_ENT38 Polyribonucleotide nucleotidyltransferase OS...    29   8.4  

>sp|Q08416|YO044_YEAST Uncharacterized membrane protein YOR044W
           OS=Saccharomyces cerevisiae GN=YOR044W PE=1 SV=1
          Length = 157

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 55  KTVDFHLKYLIAFLRVPLLEKLTFNVLPKAYKGTAYLVHVFTYEHKRGQ 201
           +++ +  +  IAFL +P L    F++    Y+   YL  +F Y+ K G+
Sbjct: 14  QSLQYICRTCIAFLLIPFLGLYAFDLFLYVYRMILYLSQMFNYKRKLGR 62


>sp|Q3Z259|BTUC_SHISS Vitamin B12 import system permease protein
           btuC OS=Shigella sonnei (strain Ss046) GN=btuC PE=3 SV=1
          Length = 326

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 339 APGWII*CSVSTYPRVVRSVCIDPHILPCCGLLANRTLILGTA 211
           A GW++  SV+    +     + PHIL  CGL  +R L+ G A
Sbjct: 238 ATGWMVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCA 280


>sp|Q7C1M5|BTUC_SHIFL Vitamin B12 import system permease protein
           btuC OS=Shigella flexneri GN=btuC PE=3 SV=1
          Length = 326

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 339 APGWII*CSVSTYPRVVRSVCIDPHILPCCGLLANRTLILGTA 211
           A GW++  SV+    +     + PHIL  CGL  +R L+ G A
Sbjct: 238 ATGWMVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCA 280


>sp|Q0T4S1|BTUC_SHIF8 Vitamin B12 import system permease protein
           btuC OS=Shigella flexneri serotype 5b (strain 8401)
           GN=btuC PE=3 SV=1
          Length = 326

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 339 APGWII*CSVSTYPRVVRSVCIDPHILPCCGLLANRTLILGTA 211
           A GW++  SV+    +     + PHIL  CGL  +R L+ G A
Sbjct: 238 ATGWMVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCA 280


>sp|Q32FI8|BTUC_SHIDS Vitamin B12 import system permease protein
           btuC OS=Shigella dysenteriae serotype 1 (strain Sd197)
           GN=btuC PE=3 SV=1
          Length = 326

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 339 APGWII*CSVSTYPRVVRSVCIDPHILPCCGLLANRTLILGTA 211
           A GW++  SV+    +     + PHIL  CGL  +R L+ G A
Sbjct: 238 ATGWMVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCA 280


>sp|Q321G8|BTUC_SHIBS Vitamin B12 import system permease protein
           btuC OS=Shigella boydii serotype 4 (strain Sb227)
           GN=btuC PE=3 SV=1
          Length = 326

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 339 APGWII*CSVSTYPRVVRSVCIDPHILPCCGLLANRTLILGTA 211
           A GW++  SV+    +     + PHIL  CGL  +R L+ G A
Sbjct: 238 ATGWMVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCA 280


>sp|Q8ZPS8|BTUC_SALTY Vitamin B12 import system permease protein
           btuC OS=Salmonella typhimurium GN=btuC PE=3 SV=1
          Length = 326

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 339 APGWII*CSVSTYPRVVRSVCIDPHILPCCGLLANRTLILGTA 211
           A GW++  SV+    +     + PHIL  CGL  +R L+ G A
Sbjct: 238 ATGWMVGVSVAMAGAIGFIGLVIPHILRLCGLTDHRVLLPGCA 280


>sp|Q8Z6I5|BTUC_SALTI Vitamin B12 import system permease protein
           btuC OS=Salmonella typhi GN=btuC PE=3 SV=1
          Length = 326

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 339 APGWII*CSVSTYPRVVRSVCIDPHILPCCGLLANRTLILGTA 211
           A GW++  SV+    +     + PHIL  CGL  +R L+ G A
Sbjct: 238 ATGWMVGVSVAMAGAIGFIGLVIPHILRLCGLTDHRVLLPGCA 280


>sp|A9N235|BTUC_SALPB Vitamin B12 import system permease protein
           btuC OS=Salmonella paratyphi B (strain ATCC BAA-1250 /
           SPB7) GN=btuC PE=3 SV=1
          Length = 326

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 339 APGWII*CSVSTYPRVVRSVCIDPHILPCCGLLANRTLILGTA 211
           A GW++  SV+    +     + PHIL  CGL  +R L+ G A
Sbjct: 238 ATGWMVGVSVAMAGAIGFIGLVIPHILRLCGLTDHRVLLPGCA 280


>sp|Q5PH87|BTUC_SALPA Vitamin B12 import system permease protein
           btuC OS=Salmonella paratyphi A GN=btuC PE=3 SV=1
          Length = 326

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 339 APGWII*CSVSTYPRVVRSVCIDPHILPCCGLLANRTLILGTA 211
           A GW++  SV+    +     + PHIL  CGL  +R L+ G A
Sbjct: 238 ATGWMVGVSVAMAGAIGFIGLVIPHILRLCGLTDHRVLLPGCA 280
tr_hit_id B3NAS3
Definition tr|B3NAS3|B3NAS3_DROER GG24451 OS=Drosophila erecta
Align length 111
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920834|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_C08.
         (393 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3NAS3|B3NAS3_DROER GG24451 OS=Drosophila erecta GN=GG24451 P...    35   1.4  
tr|Q9VQN3|Q9VQN3_DROME CG3332, isoform A OS=Drosophila melanogas...    34   4.1  
tr|Q8IQ02|Q8IQ02_DROME CG3332, isoform B OS=Drosophila melanogas...    34   4.1  
tr|Q29L36|Q29L36_DROPS GA17385 OS=Drosophila pseudoobscura pseud...    33   7.1  
tr|B4GSF2|B4GSF2_DROPE GL26524 OS=Drosophila persimilis GN=GL265...    33   7.1  
tr|A5C0E4|A5C0E4_VITVI Putative uncharacterized protein OS=Vitis...    33   9.2  

>tr|B3NAS3|B3NAS3_DROER GG24451 OS=Drosophila erecta GN=GG24451 PE=4
           SV=1
          Length = 779

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 29/111 (26%), Positives = 51/111 (45%)
 Frame = -1

Query: 339 APGWII*CSVSTYPRVVRSVCIDPHILPCCGLLANRTLILGTADKNLTSFVFICKDVYKV 160
           AP   +  +VS+   V+ ++ I P   P      +RT I+G   + L+ F+F C   Y +
Sbjct: 451 APSTAVLANVSS---VIANMTITPSPTPAAFSGCSRTTIMGALVQQLSPFLFPCTIEYSL 507

Query: 159 CCAFVCLGEHIKSKLFK*WDSQKSNKVFEVEVDCFRTGHPVSSKCEHPTSV 7
            CA +         LF+ W + KS  + +++     +  P ++K  H  SV
Sbjct: 508 ICAVI---------LFEMWKTVKS--IPDIDKSRKNSVKPAAAKPAHHFSV 547


>tr|Q9VQN3|Q9VQN3_DROME CG3332, isoform A OS=Drosophila melanogaster
           GN=CG3332 PE=2 SV=3
          Length = 797

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 26/102 (25%), Positives = 46/102 (45%)
 Frame = -1

Query: 312 VSTYPRVVRSVCIDPHILPCCGLLANRTLILGTADKNLTSFVFICKDVYKVCCAFVCLGE 133
           V+    V+ ++ I P   P      +RT I+G   + L+ F+F C   Y + CA +    
Sbjct: 475 VANVSSVIVNMTITPSPTPAAFSGCSRTTIMGALVQQLSPFLFPCTIEYSLICAVI---- 530

Query: 132 HIKSKLFK*WDSQKSNKVFEVEVDCFRTGHPVSSKCEHPTSV 7
                LF+ W + KS  + +++     +  P ++K  H  SV
Sbjct: 531 -----LFEMWKTVKS--IPDIDKTRKNSVKPAAAKPAHHFSV 565


>tr|Q8IQ02|Q8IQ02_DROME CG3332, isoform B OS=Drosophila melanogaster
           GN=CG3332 PE=2 SV=1
          Length = 629

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 26/102 (25%), Positives = 46/102 (45%)
 Frame = -1

Query: 312 VSTYPRVVRSVCIDPHILPCCGLLANRTLILGTADKNLTSFVFICKDVYKVCCAFVCLGE 133
           V+    V+ ++ I P   P      +RT I+G   + L+ F+F C   Y + CA +    
Sbjct: 307 VANVSSVIVNMTITPSPTPAAFSGCSRTTIMGALVQQLSPFLFPCTIEYSLICAVI---- 362

Query: 132 HIKSKLFK*WDSQKSNKVFEVEVDCFRTGHPVSSKCEHPTSV 7
                LF+ W + KS  + +++     +  P ++K  H  SV
Sbjct: 363 -----LFEMWKTVKS--IPDIDKTRKNSVKPAAAKPAHHFSV 397


>tr|Q29L36|Q29L36_DROPS GA17385 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA17385 PE=4 SV=2
          Length = 790

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 24/96 (25%), Positives = 43/96 (44%)
 Frame = -1

Query: 294 VVRSVCIDPHILPCCGLLANRTLILGTADKNLTSFVFICKDVYKVCCAFVCLGEHIKSKL 115
           ++ +V   P   P      +RT I+G   + L+ F+F C   Y + CA +         L
Sbjct: 474 IIANVTATPSSTPASFTGCSRTTIMGALVQQLSPFLFPCTIEYSLICAVI---------L 524

Query: 114 FK*WDSQKSNKVFEVEVDCFRTGHPVSSKCEHPTSV 7
           ++ W + KS  + +++     +  PV+ K  H  SV
Sbjct: 525 YEMWKTVKS--IPDIDKTRKNSVKPVAQKPAHHFSV 558


>tr|B4GSF2|B4GSF2_DROPE GL26524 OS=Drosophila persimilis GN=GL26524
           PE=4 SV=1
          Length = 790

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 24/96 (25%), Positives = 43/96 (44%)
 Frame = -1

Query: 294 VVRSVCIDPHILPCCGLLANRTLILGTADKNLTSFVFICKDVYKVCCAFVCLGEHIKSKL 115
           ++ +V   P   P      +RT I+G   + L+ F+F C   Y + CA +         L
Sbjct: 474 IIANVTATPSSTPASFTGCSRTTIMGALVQQLSPFLFPCTIEYSLICAVI---------L 524

Query: 114 FK*WDSQKSNKVFEVEVDCFRTGHPVSSKCEHPTSV 7
           ++ W + KS  + +++     +  PV+ K  H  SV
Sbjct: 525 YEMWKTVKS--IPDIDKTRKNSVKPVAQKPAHHFSV 558


>tr|A5C0E4|A5C0E4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_024761 PE=4 SV=1
          Length = 176

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 4/107 (3%)
 Frame = -1

Query: 309 STYPRVVRSV----CIDPHILPCCGLLANRTLILGTADKNLTSFVFICKDVYKVCCAFVC 142
           +T P V+ S+     ++  I   CG   +R+L+L T D +   F+F C     V   + C
Sbjct: 44  ATSPTVIESIGNLXTLEGFICATCGDARSRSLLLATTDYSRNXFIFNCXQXXAVXFHYXC 103

Query: 141 LGEHIKSKLFK*WDSQKSNKVFEVEVDCFRTGHPVSSKCEHPTSVLV 1
                  K    + S  S K+  +  +        S  C  P S ++
Sbjct: 104 SELTFPRKFMGNFHSPNSQKLXVIAENPSVEEVKGSENCSGPFSTVM 150