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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920837
Clone id YMU001_000142_C11
Library
Length 340
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000142_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATGACTCATGGGGAGCTTTGACCTGTCTGCTAGAAACATCTACAGACTCTGAAGCATGAG
CTAGACGATCAGGCTTCCCTGTCTGAGCCCCATCTGACATGGATGACAAATCATCTACAG
ATGATGTTCCAAAAAGAGAGGAATCGGTGCTGCTCTGAACTCTATCCTGCCAGTCTTTTG
GCTTAAAATCAGCTGTGGCATGGTCTGCATCACTTTTTCCTCTCTCATTATCATGCCTCA
TTTCTCCATAATCCTCAGCCACTCTACAGTCTGAAGTACTGCTCCTCTGCTTTTTTGAGT
CTGAAAACTTTTCTTTAACCAAGCCATCCTGTAATCTGAG
■■Homology search results ■■ -
sp_hit_id O60711
Definition sp|O60711|LPXN_HUMAN Leupaxin OS=Homo sapiens
Align length 88
Score (bit) 32.0
E-value 0.98
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920837|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_C11.
         (340 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O60711|LPXN_HUMAN Leupaxin OS=Homo sapiens GN=LPXN PE=1 SV=1        32   0.98 
sp|Q5REK1|ZN136_PONAB Zinc finger protein 136 OS=Pongo abelii GN...    31   2.2  
sp|P52737|ZN136_HUMAN Zinc finger protein 136 OS=Homo sapiens GN...    31   2.2  
sp|Q12K62|OSTA_SHEDO LPS-assembly protein OS=Shewanella denitrif...    30   4.9  
sp|P21138|SERA_ENTHI Serine-rich 25 kDa antigen protein OS=Entam...    29   6.4  
sp|Q99N69|LPXN_MOUSE Leupaxin OS=Mus musculus GN=Lpxn PE=1 SV=2        29   8.3  
sp|O53133|FLPA_METMA Fibrillarin-like rRNA/tRNA 2'-O-methyltrans...    29   8.3  

>sp|O60711|LPXN_HUMAN Leupaxin OS=Homo sapiens GN=LPXN PE=1 SV=1
          Length = 386

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 23/88 (26%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
 Frame = +1

Query: 52  KHELDDQASLSEPHLTWMTNHLQMMFQKERNRCCSELYPASLLA*NQLWHGLHHFFLSH- 228
           K E+          L +  N    +F      C + +    L A NQ WH   HFF SH 
Sbjct: 182 KEEIGSSPFFERSGLAYCPNDYHQLFSPRCAYCAAPILDKVLTAMNQTWHP-EHFFCSHC 240

Query: 229 ---YHASFLHNPQPLYSLKYCSSAFLSL 303
              + A   H         YC   FL++
Sbjct: 241 GEVFGAEGFHEKD---KKPYCRKDFLAM 265


>sp|Q5REK1|ZN136_PONAB Zinc finger protein 136 OS=Pongo abelii
           GN=ZNF136 PE=2 SV=1
          Length = 540

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +1

Query: 187 NQLWHGL--HHFFLSHYHASFLHNPQPLYSLKYCSSAFLSLK 306
           NQ W     HH F +H     +H  + LY  K C   F SLK
Sbjct: 143 NQCWKPFSSHHSFRTH---EIIHTGEKLYDCKECGKTFFSLK 181


>sp|P52737|ZN136_HUMAN Zinc finger protein 136 OS=Homo sapiens
           GN=ZNF136 PE=2 SV=1
          Length = 540

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +1

Query: 187 NQLWHGL--HHFFLSHYHASFLHNPQPLYSLKYCSSAFLSLK 306
           NQ W     HH F +H     +H  + LY  K C   F SLK
Sbjct: 143 NQCWKPFSSHHSFRTH---EIIHTGEKLYDCKECGKTFFSLK 181


>sp|Q12K62|OSTA_SHEDO LPS-assembly protein OS=Shewanella
           denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
           GN=imp PE=3 SV=1
          Length = 766

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -1

Query: 271 DCRVAEDY---GEMRHDNERGKSDADHATADFKPKD 173
           D R+ +D+   G ++HD E GK+     T D++P +
Sbjct: 594 DARLYQDWFISGAVQHDTEHGKNKKSEVTLDYRPSN 629


>sp|P21138|SERA_ENTHI Serine-rich 25 kDa antigen protein
           OS=Entamoeba histolytica PE=1 SV=1
          Length = 233

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 27/111 (24%), Positives = 40/111 (36%), Gaps = 13/111 (11%)
 Frame = -1

Query: 337 RLQDGLVKEKFSDSKKQRSSTSDCRVAEDYGEMRHDN-------------ERGKSDADHA 197
           +L++   KEK S +K + SS  D    ED      DN             E   SD   A
Sbjct: 42  KLEEAEEKEKSSSAKPESSSNEDNEDDEDEKASSSDNSESSSSDKPDNKPEASSSDKPEA 101

Query: 196 TADFKPKDWQDRVQXXXXXXXXXXXSVDDLSSMSDGAQTGKPDRLAHASES 44
           ++  KP +  +              S D   +  + + + KPD    AS S
Sbjct: 102 SSSDKPDNKPEASSSDKPDNKPEASSSDKPDNKPEASSSDKPDNKPEASSS 152


>sp|Q99N69|LPXN_MOUSE Leupaxin OS=Mus musculus GN=Lpxn PE=1 SV=2
          Length = 386

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
 Frame = +1

Query: 52  KHELDDQASLSEPHLTWMTNHLQMMFQKERNRCCSELYPASLLA*NQLWHGLHHFFLSH- 228
           K EL          L + +     +F      C + +    L A N+ WH   HFF SH 
Sbjct: 182 KEELGSSPFFERSGLAYCSKDYHRLFSPRCAYCAAPITDKVLTAMNKTWHP-EHFFCSHC 240

Query: 229 ---YHASFLHNPQPLYSLKYCSSAFLSL 303
              + A   H         YC   FL++
Sbjct: 241 GEVFGAEGFHEKD---KKPYCRKDFLAM 265


>sp|O53133|FLPA_METMA Fibrillarin-like rRNA/tRNA
           2'-O-methyltransferase OS=Methanosarcina mazei GN=flpA
           PE=3 SV=2
          Length = 227

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 88  AQTGKPDRLAHASESVDVSSRQVKAPHES 2
           A  GKPD  AH  E VDV  + V  P+++
Sbjct: 124 ADAGKPDSYAHIVEPVDVIFQDVAQPNQA 152
tr_hit_id A5L1N7
Definition tr|A5L1N7|A5L1N7_9GAMM Ribonuclease E OS=Vibrionales bacterium SWAT-3
Align length 105
Score (bit) 33.5
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920837|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_C11.
         (340 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5L1N7|A5L1N7_9GAMM Ribonuclease E OS=Vibrionales bacterium S...    33   5.5  

>tr|A5L1N7|A5L1N7_9GAMM Ribonuclease E OS=Vibrionales bacterium
           SWAT-3 GN=VSWAT3_16048 PE=4 SV=1
          Length = 1053

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 27/105 (25%), Positives = 47/105 (44%)
 Frame = -1

Query: 316 KEKFSDSKKQRSSTSDCRVAEDYGEMRHDNERGKSDADHATADFKPKDWQDRVQXXXXXX 137
           + K  D +KQR   +  ++AE+  ++  D + GKSDA  A  + K    ++R Q      
Sbjct: 664 RNKQRDEQKQREEQAPSKLAEEGLQLAADAQAGKSDAPKAKPEAKAAKIKERRQ---RRK 720

Query: 136 XXXXXSVDDLSSMSDGAQTGKPDRLAHASESVDVSSRQVKAPHES 2
                 V D  + +D A+    ++ A +     VS  Q  A ++S
Sbjct: 721 LNKQVRVKDQQAQADAAENSTKEQKAPS-----VSKEQAAAKNKS 760