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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920847
Clone id YMU001_000142_D10
Library
Length 426
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000142_D10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCCTCCAGCTTTTGGGACAAGGCTAGTGGTACTGAATGGGGAAGAAAGGCATTGAAGGAT
TTTGTTGAAGAAAGGATGCGGAAGCTGAAAAGTGAGCTTAAGCCGGCCTTCACTTGGTGT
CAACCTAGGGCATCATTGCCAAATCACAAGGGAGTAGAGACATTCTTGAGGGGTCCTCTT
AGAAAAATTCACCTACCATGGCAATTTTACTGGTCTGAAGCATGCCCGGAACTTTGCACA
TAAGTACTTTGGATGGCACCATGATGGCTTTAGTGCCACAGGAAGGTGGGAGAGGACGGT
CTGCTTATTATGAGATTGTGAAGACACGCAGTGTCTTCGAGGAGATGGCAAAGAACTGGT
GGACTGGACAACAAGAGCTTGCAAGGCTTCAGGCAAGTTTACATGAATGTTTGGGCACCA
TATCCC
■■Homology search results ■■ -
sp_hit_id Q751K5
Definition sp|Q751K5|ALG3_ASHGO Dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl mannosyltransferase OS=Ashbya gossypii
Align length 36
Score (bit) 32.0
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920847|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_D10.
         (426 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q751K5|ALG3_ASHGO Dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl ...    32   1.0  
sp|Q8CHP6|PHC3_MOUSE Polyhomeotic-like protein 3 OS=Mus musculus...    31   1.8  
sp|P19171|CHIB_ARATH Basic endochitinase B OS=Arabidopsis thalia...    30   5.3  
sp|Q1LTZ4|SUCC_BAUCH Succinyl-CoA ligase [ADP-forming] subunit b...    29   6.8  
sp|A8K8P3|SFI1_HUMAN Protein SFI1 homolog OS=Homo sapiens GN=SFI...    29   8.8  
sp|Q9V5N8|STAN_DROME Protocadherin-like wing polarity protein st...    29   9.1  
sp|P16297|IL2RB_MOUSE Interleukin-2 receptor subunit beta OS=Mus...    29   9.1  
sp|Q8N8V2|GBP7_HUMAN Guanylate-binding protein 7 OS=Homo sapiens...    29   9.1  
sp|P33076|C2TA_HUMAN MHC class II transactivator OS=Homo sapiens...    29   9.1  

>sp|Q751K5|ALG3_ASHGO Dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl
           mannosyltransferase OS=Ashbya gossypii GN=ALG3 PE=3 SV=1
          Length = 432

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 203 NFTGLKHARNFAHKYFGWHHDGFSATGRWERTVCLL 310
           NF G+  AR+  +++  W+H    A   W R  CLL
Sbjct: 354 NFIGVLFARSLHYQFLAWYHWTLPALLHWARMPCLL 389


>sp|Q8CHP6|PHC3_MOUSE Polyhomeotic-like protein 3 OS=Mus musculus
           GN=Phc3 PE=1 SV=1
          Length = 981

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 390 EALQALVVQSTSSLPSPRRHCVSSQSHNKQTVLSHLPVALKPSWCHP 250
           + +Q + +QS S  P P +HC+   +H     LS  P   +P  C P
Sbjct: 329 QQIQPITLQSPSQDPPPSQHCIPLPNHG----LSPAPSNAQPQHCSP 371


>sp|P19171|CHIB_ARATH Basic endochitinase B OS=Arabidopsis thaliana
           GN=CHI-B PE=1 SV=3
          Length = 335

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 88  KSELKPAFTWCQPRASLPNHKGVETFLRGPLRKIHLPWQF 207
           K E  PA  +C+P A+ P   G   + RGP++   L W +
Sbjct: 171 KQEQNPASDYCEPSATWPCASGKRYYGRGPMQ---LSWNY 207


>sp|Q1LTZ4|SUCC_BAUCH Succinyl-CoA ligase [ADP-forming] subunit beta
           OS=Baumannia cicadellinicola subsp. Homalodisca
           coagulata GN=sucC PE=3 SV=1
          Length = 393

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 285 GGRGRSAYYEIVKTRSVFEEMAKNWW 362
           GGRG+S    IV+++   +E AK W+
Sbjct: 52  GGRGKSGGVRIVRSKEEIQEFAKQWF 77


>sp|A8K8P3|SFI1_HUMAN Protein SFI1 homolog OS=Homo sapiens GN=SFI1
           PE=1 SV=2
          Length = 1242

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 306 YYEIVKTRSVFEEMAKNWWTGQQE 377
           YYE    R VFEE  + WW  Q E
Sbjct: 115 YYEQRLLRKVFEEWKEEWWVFQHE 138


>sp|Q9V5N8|STAN_DROME Protocadherin-like wing polarity protein stan
            OS=Drosophila melanogaster GN=stan PE=1 SV=3
          Length = 3574

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 231  FRACFRPVKLPW*VNFSKRTPQECLYSLVI 142
            F    RP++LPW  +FS RT Q+  + L I
Sbjct: 1809 FNPLLRPIQLPWTTSFSLRTRQKEAFLLQI 1838


>sp|P16297|IL2RB_MOUSE Interleukin-2 receptor subunit beta OS=Mus
           musculus GN=Il2rb PE=2 SV=1
          Length = 539

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 390 EALQALVVQSTSS-LPSPRRHCVSSQSHNKQTVLSHLPVALKPSWC 256
           +A+Q L++Q  S+ LPSP  H  +S   N+     HLP AL+   C
Sbjct: 336 KAVQLLLLQKDSAPLPSPSGHSQASCFTNQGYFFFHLPNALEIESC 381


>sp|Q8N8V2|GBP7_HUMAN Guanylate-binding protein 7 OS=Homo sapiens
           GN=GBP7 PE=2 SV=1
          Length = 638

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 85  LKSELKPAFTWCQPRASLPNH 147
           +KSE K  + WC P  S PNH
Sbjct: 71  VKSETKGIWMWCVPHPSKPNH 91


>sp|P33076|C2TA_HUMAN MHC class II transactivator OS=Homo sapiens
           GN=CIITA PE=1 SV=2
          Length = 1130

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 117 PSEGRLKL--TFQLPHPFFNKILQCLSSPFSTTSLVP 13
           P+ G+++L  T Q+P PF +  L CL+ P      VP
Sbjct: 195 PASGQMRLEKTDQIPMPFSSSSLSCLNLPEGPIQFVP 231
tr_hit_id Q3UPW8
Definition tr|Q3UPW8|Q3UPW8_MOUSE Putative uncharacterized protein OS=Mus musculus
Align length 41
Score (bit) 34.7
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920847|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_D10.
         (426 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3UPW8|Q3UPW8_MOUSE Putative uncharacterized protein OS=Mus m...    35   2.5  
tr|A5IGF6|A5IGF6_LEGPC CMP-N-acetylneuraminic acid synthetase OS...    35   2.5  
tr|Q5ZXI0|Q5ZXI0_LEGPH CMP-N-acetylneuraminic acid synthetase OS...    34   3.2  
tr|Q5X6Z6|Q5X6Z6_LEGPA CMP-N-acetlyneuraminic acid synthetase OS...    34   3.2  
tr|Q5WYE8|Q5WYE8_LEGPL CMP-N-acetlyneuraminic acid synthetase OS...    34   3.2  
tr|Q9RDX4|Q9RDX4_LEGPN CMP-N-acetlyneuraminic acid synthetase OS...    34   3.2  
tr|A9TC42|A9TC42_PHYPA Predicted protein OS=Physcomitrella paten...    34   3.2  
tr|A3VH51|A3VH51_9RHOB Putative uncharacterized protein OS=Rhodo...    33   5.5  

>tr|Q3UPW8|Q3UPW8_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Mlxip PE=2 SV=1
          Length = 166

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 109 FTWCQPRASLPNHKGVETFLRGPLRKIHLPWQFYWSEACPE 231
           F+WC P   L  H      L+ PL  I+LPW+F   E  P+
Sbjct: 37  FSWCSPLPWLRGHSA----LKSPLGMIYLPWRFSCFEILPD 73


>tr|A5IGF6|A5IGF6_LEGPC CMP-N-acetylneuraminic acid synthetase
           OS=Legionella pneumophila (strain Corby) GN=neuA PE=4
           SV=1
          Length = 232

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 375 LVVQSTSSLPSPR--RHCVSSQSHNKQTVLSHLPVALKPSWC 256
           L++Q TS    P   RH V       ++V+S  P++LKPSWC
Sbjct: 103 LLLQPTSPFRKPETIRHAVEIHQATGKSVVSVSPISLKPSWC 144


>tr|Q5ZXI0|Q5ZXI0_LEGPH CMP-N-acetylneuraminic acid synthetase
           OS=Legionella pneumophila subsp. pneumophila (strain
           Philadelphia 1 / ATCC 33152 / DSM 7513) GN=neuA PE=4
           SV=1
          Length = 232

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 375 LVVQSTSSLPSPR--RHCVSSQSHNKQTVLSHLPVALKPSWC 256
           L++Q TS    P   RH V       ++V+S  P++LKPSWC
Sbjct: 103 LLLQPTSPFRKPETIRHAVEIHKVTGKSVVSVSPISLKPSWC 144


>tr|Q5X6Z6|Q5X6Z6_LEGPA CMP-N-acetlyneuraminic acid synthetase
           OS=Legionella pneumophila (strain Paris) GN=neuA PE=4
           SV=1
          Length = 232

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 375 LVVQSTSSLPSPR--RHCVSSQSHNKQTVLSHLPVALKPSWC 256
           L++Q TS    P   RH V       ++V+S  P++LKPSWC
Sbjct: 103 LLLQPTSPFRKPETIRHAVEIHKVTGKSVVSVSPISLKPSWC 144


>tr|Q5WYE8|Q5WYE8_LEGPL CMP-N-acetlyneuraminic acid synthetase
           OS=Legionella pneumophila (strain Lens) GN=neuA PE=4
           SV=1
          Length = 232

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 375 LVVQSTSSLPSPR--RHCVSSQSHNKQTVLSHLPVALKPSWC 256
           L++Q TS    P   RH V       ++V+S  P++LKPSWC
Sbjct: 103 LLLQPTSPFRKPETIRHAVEIHQVTGKSVVSVSPISLKPSWC 144


>tr|Q9RDX4|Q9RDX4_LEGPN CMP-N-acetlyneuraminic acid synthetase
           OS=Legionella pneumophila GN=neuA PE=4 SV=1
          Length = 232

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 375 LVVQSTSSLPSPR--RHCVSSQSHNKQTVLSHLPVALKPSWC 256
           L++Q TS    P   RH V       ++V+S  P++LKPSWC
Sbjct: 103 LLLQPTSPFRKPETIRHAVEIHKVTGKSVVSVSPISLKPSWC 144


>tr|A9TC42|A9TC42_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_169264 PE=4 SV=1
          Length = 1168

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/24 (62%), Positives = 15/24 (62%)
 Frame = +1

Query: 103 PAFTWCQPRASLPNHKGVETFLRG 174
           P F W QP A LP H  VE FLRG
Sbjct: 905 PEFCWNQPFAHLPRHPTVEAFLRG 928


>tr|A3VH51|A3VH51_9RHOB Putative uncharacterized protein
           OS=Rhodobacterales bacterium HTCC2654 GN=RB2654_15010
           PE=4 SV=1
          Length = 196

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = -1

Query: 405 HVNLPEALQALVVQSTSSLPSPRRHCVSSQSHNKQTVLSHLPVALKPSWCHPKYLCAKFR 226
           H+   +AL  ++ Q    L  P R C    SH+ Q +  HL + ++PS   P + CA+FR
Sbjct: 65  HIGAIQALGQVLGQQGRGLEPPCRRC---NSHDNQ-IFDHL-IQIQPSRSPPSFRCARFR 119

Query: 225 ACFRPVK 205
              + ++
Sbjct: 120 VSHQSLR 126