BP920848
Clone id YMU001_000142_D12
Library
Length 398
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000142_D12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ACAACAGTACTAACTTGGGCGGTATCTGTACGCCCATCAGTGTTTCCAGATGAAATCCTG
ATGGACAAACTGTGAGCATTCTCACAAGTCGGGATATCAACACTAAGGCTAGCCGATTTA
GCATCTTGCACCTCTGGTGTGCGATACTTCTCGACCTCTTGTTCTGCTTCCATAGCCACC
TGCCGTGCAATTTCCAGAGCATCCTCTCCATAACATCCTGAGGAGTCCACACCCTTTGCA
TCTTTCGGAGATACACAACCTCGTGGCTGTCTTTCAGAATCTTCACAATCTTCATCAACA
GAAACTAAGCCGGACTCGGAAGCTGTTTGGCACTGTCCAATCAATGAAGTGGCAATAGAA
TTTCCCACTAACATGTTTTCCTTTTCATCTCTTACAGT
■■Homology search results ■■ -
sp_hit_id A6ZW87
Definition sp|A6ZW87|ATG29_YEAS7 Autophagy-related protein 29 OS=Saccharomyces cerevisiae (strain YJM789)
Align length 59
Score (bit) 33.5
E-value 0.34
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920848|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_D12.
(398 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A6ZW87|ATG29_YEAS7 Autophagy-related protein 29 OS=Saccharomy... 33 0.34
sp|Q8CFK2|TF3B_MOUSE Transcription factor IIIB 90 kDa subunit OS... 32 0.98
sp|Q8R534|ADM1B_MOUSE Disintegrin and metalloproteinase domain-c... 32 0.98
sp|Q12226|AYT1_YEAST Trichothecene 3-O-acetyltransferase OS=Sacc... 32 1.3
sp|Q92994|TF3B_HUMAN Transcription factor IIIB 90 kDa subunit OS... 30 2.9
sp|Q23972|SMG_DROME Protein Smaug OS=Drosophila melanogaster GN=... 30 3.7
sp|P27926|HXK3_RAT Hexokinase-3 OS=Rattus norvegicus GN=Hk3 PE=2... 30 3.7
sp|Q3TRM8|HXK3_MOUSE Hexokinase-3 OS=Mus musculus GN=Hk3 PE=1 SV=2 30 3.7
sp|Q6TXD4|DNMBP_MOUSE Dynamin-binding protein OS=Mus musculus GN... 30 3.7
sp|Q868Z9|PPN_DROME Papilin OS=Drosophila melanogaster GN=Ppn PE... 30 4.9
sp|Q5RAD0|CO7_PONAB Complement component C7 OS=Pongo abelii GN=C... 30 4.9
sp|P10643|CO7_HUMAN Complement component C7 OS=Homo sapiens GN=C... 30 4.9
sp|Q9WZJ9|SYT_THEMA Threonyl-tRNA synthetase OS=Thermotoga marit... 29 6.4
sp|Q9CS84|NRX1A_MOUSE Neurexin-1-alpha OS=Mus musculus GN=Nrxn1 ... 29 6.4
sp|Q9ULB1|NRX1A_HUMAN Neurexin-1-alpha OS=Homo sapiens GN=NRXN1 ... 29 6.4
sp|A2SF35|CCME_METPP Cytochrome c-type biogenesis protein ccmE O... 29 6.4
sp|P32578|SIP1_YEAST Protein SIP1 OS=Saccharomyces cerevisiae GN... 29 8.3
sp|Q96AA8|JKIP2_HUMAN Janus kinase and microtubule-interacting p... 29 8.3
sp|Q9UPZ9|ICK_HUMAN Serine/threonine-protein kinase ICK OS=Homo ... 29 8.3
sp|Q68CZ1|FTM_HUMAN Protein fantom OS=Homo sapiens GN=RPGRIP1L P... 29 8.3

>sp|A6ZW87|ATG29_YEAS7 Autophagy-related protein 29 OS=Saccharomyces
cerevisiae (strain YJM789) GN=ATG29 PE=3 SV=1
Length = 209

Score = 33.5 bits (75), Expect = 0.34
Identities = 18/59 (30%), Positives = 34/59 (57%)
Frame = -1

Query: 182 QVAMEAEQEVEKYRTPEVQDAKSASLSVDIPTCENAHSLSIRISSGNTDGRTDTAQVST 6
Q+ +E ++++EKY +V + S + IPT +N + L++ S T+ R D+ +V T
Sbjct: 82 QLQLEKKRDLEKYSNDQVNEGMSDLIHKYIPTLQNDNLLNVSASPLTTE-RQDSEEVET 139


>sp|Q8CFK2|TF3B_MOUSE Transcription factor IIIB 90 kDa subunit
OS=Mus musculus GN=Brf1 PE=1 SV=1
Length = 676

Score = 32.0 bits (71), Expect = 0.98
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = -1

Query: 347 SLIGQCQTASESGLVSVDEDCEDSERQPRGCVSPKDAKGVDSSGCYGEDALEIARQVAME 168
SL+G TA+ G+ +C S P G PKD+ G G D LEI R + E
Sbjct: 409 SLLGPLPTAASLGISDSIRECISS---PSG--DPKDSSGDGELDLSGIDDLEIDRYILNE 463

Query: 167 AEQEVE 150
+E V+
Sbjct: 464 SEARVK 469


>sp|Q8R534|ADM1B_MOUSE Disintegrin and metalloproteinase
domain-containing protein 1b OS=Mus musculus GN=Adam1b
PE=2 SV=1
Length = 806

Score = 32.0 bits (71), Expect = 0.98
Identities = 20/69 (28%), Positives = 36/69 (52%)
Frame = -1

Query: 329 QTASESGLVSVDEDCEDSERQPRGCVSPKDAKGVDSSGCYGEDALEIARQVAMEAEQEVE 150
+TASE+G ++E + E++ + V P++AKG + YG++ E V E +E
Sbjct: 731 ETASEAGPSELEE-LPEGEKEEQEEVLPEEAKGEEEELEYGKEEAEEQGAVEEEGAEEAN 789

Query: 149 KYRTPEVQD 123
+ E +D
Sbjct: 790 EEAAAEKKD 798


>sp|Q12226|AYT1_YEAST Trichothecene 3-O-acetyltransferase
OS=Saccharomyces cerevisiae GN=AYT1 PE=1 SV=1
Length = 474

Score = 31.6 bits (70), Expect = 1.3
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1

Query: 79 FSQVGISTLRLADLASCTSGVRYFSTSCSASIATCRAISRA 201
FS + + LR+ + +CTSG ++ ST + +++SRA
Sbjct: 257 FSAISLQNLRILAMQTCTSGTKFVSTDDIVTAFIWKSVSRA 297


>sp|Q92994|TF3B_HUMAN Transcription factor IIIB 90 kDa subunit
OS=Homo sapiens GN=BRF1 PE=1 SV=1
Length = 677

Score = 30.4 bits (67), Expect = 2.9
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = -1

Query: 347 SLIGQCQTASESGLVSVDEDCEDSERQPRGCVSPKDAKGVDSSGCYGEDALEIARQVAME 168
SL+ TA+ G+ +C S+ PKDA G G D LEI R + E
Sbjct: 410 SLLDPLPTAASLGISDSIRECISSQSS-----DPKDASGDGELDLSGIDDLEIDRYILNE 464

Query: 167 AEQEVE 150
+E V+
Sbjct: 465 SEARVK 470


>sp|Q23972|SMG_DROME Protein Smaug OS=Drosophila melanogaster GN=smg
PE=1 SV=2
Length = 999

Score = 30.0 bits (66), Expect = 3.7
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -1

Query: 362 NSIATSLIGQCQTASESGLVSVDEDCEDS 276
NS+ T I C ++S S +++V+++C +S
Sbjct: 519 NSLTTQTISSCSSSSNSSVITVNDNCSNS 547


>sp|P27926|HXK3_RAT Hexokinase-3 OS=Rattus norvegicus GN=Hk3 PE=2
SV=1
Length = 924

Score = 30.0 bits (66), Expect = 3.7
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -1

Query: 236 KGVDSSGCYGEDALEIARQVAMEAEQEVEKYRTPEVQDAKSASLS--VDIPTCE 81
KG ++SGC G+D + + R+ A+ Q VE V D +S D P CE
Sbjct: 628 KGFNASGCEGQDVVYLLRE-AIRRRQAVELNVVAIVNDTVGTMMSCGYDDPCCE 680


>sp|Q3TRM8|HXK3_MOUSE Hexokinase-3 OS=Mus musculus GN=Hk3 PE=1 SV=2
Length = 922

Score = 30.0 bits (66), Expect = 3.7
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -1

Query: 236 KGVDSSGCYGEDALEIARQVAMEAEQEVEKYRTPEVQDAKSASLS--VDIPTCE 81
KG ++SGC G+D + + R+ A+ Q VE V D +S D P CE
Sbjct: 626 KGFNASGCEGQDVVYLLRE-AIRRRQAVELNVVAIVNDTVGTMMSCGYDDPRCE 678


>sp|Q6TXD4|DNMBP_MOUSE Dynamin-binding protein OS=Mus musculus
GN=Dnmbp PE=1 SV=2
Length = 1580

Score = 30.0 bits (66), Expect = 3.7
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -1

Query: 284 EDSERQPRGCVSPKDAKGVDSSGCYGEDALEIARQVAMEAEQEVEKYRTP 135
E++ QP+ PKD++ S G G+ +E ARQ E E+E Y P
Sbjct: 307 EETTAQPQESSFPKDSES--SVGKSGDSVVEEARQEPWECEEERPDYDLP 354


>sp|Q868Z9|PPN_DROME Papilin OS=Drosophila melanogaster GN=Ppn PE=1
SV=2
Length = 2898

Score = 29.6 bits (65), Expect = 4.9
Identities = 27/111 (24%), Positives = 44/111 (39%)
Frame = -1

Query: 350 TSLIGQCQTASESGLVSVDEDCEDSERQPRGCVSPKDAKGVDSSGCYGEDALEIARQVAM 171
+S + + T + S VS D D VS DS+ D+ +
Sbjct: 915 SSNVSESSTEASSSSVSDSNDSSDGSTDG---VSSTTENSSDSTSDATSDSTASSDSTDS 971

Query: 170 EAEQEVEKYRTPEVQDAKSASLSVDIPTCENAHSLSIRISSGNTDGRTDTA 18
++Q E TPE + S ++D + +A S S S +TDG + T+
Sbjct: 972 TSDQTTET--TPESSTDSTESSTLDASSTTDASSTSESSSESSTDGSSTTS 1020


tr_hit_id B8E2R9
Definition tr|B8E2R9|B8E2R9_9BACT ATP-dependent DNA helicase RecG OS=Dictyoglomus turgidum DSM 6724
Align length 83
Score (bit) 35.4
E-value 1.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920848|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_D12.
(398 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B8E2R9|B8E2R9_9BACT ATP-dependent DNA helicase RecG OS=Dictyo... 35 1.4
tr|Q9LK12|Q9LK12_ARATH Similarity to mismatch repair protein Mut... 34 4.1
tr|Q84LK0|Q84LK0_ARATH DNA mismatch repair protein OS=Arabidopsi... 34 4.1
tr|Q67IV4|Q67IV4_ORYSJ Putative uncharacterized protein OSJNBa00... 33 5.4
tr|Q0DAT5|Q0DAT5_ORYSJ Os06g0631300 protein OS=Oryza sativa subs... 33 5.4
tr|Q010R6|Q010R6_OSTTA Nucleolar protein involved in 40S ribosom... 33 5.4
tr|A9RVG3|A9RVG3_PHYPA Predicted protein OS=Physcomitrella paten... 33 5.4
tr|A2YFA4|A2YFA4_ORYSI Putative uncharacterized protein OS=Oryza... 33 5.4
tr|B6M1G0|B6M1G0_BRAFL Putative uncharacterized protein OS=Branc... 33 5.4
tr|B4PK67|B4PK67_DROYA GE20417 OS=Drosophila yakuba GN=GE20417 P... 33 5.4
tr|B4J3I7|B4J3I7_DROGR GH15352 OS=Drosophila grimshawi GN=GH1535... 33 5.4
tr|A1XQX9|A1XQX9_DANRE Neurexin 3a alpha soluble form OS=Danio r... 33 7.0
tr|A1XQX8|A1XQX8_DANRE Neurexin 3a alpha OS=Danio rerio GN=nrxn3... 33 7.0
tr|Q9XH73|Q9XH73_PRUAR Homeobox leucine zipper protein OS=Prunus... 33 7.0
tr|Q6I5J6|Q6I5J6_ORYSJ Os05g0466200 protein OS=Oryza sativa subs... 33 7.0
tr|B8AZ19|B8AZ19_ORYSI Putative uncharacterized protein OS=Oryza... 33 7.0
tr|A3B4W2|A3B4W2_ORYSJ Putative uncharacterized protein OS=Oryza... 33 7.0
tr|Q9GQQ9|Q9GQQ9_SITOR Endopolygalacturonase OS=Sitophilus oryza... 33 7.0
tr|B4QJP8|B4QJP8_DROSI GD14944 OS=Drosophila simulans GN=GD14944... 33 7.0
tr|A1XQY2|A1XQY2_DANRE Neurexin 3b alpha soluble form OS=Danio r... 33 9.2
tr|A1XQY1|A1XQY1_DANRE Neurexin 3b alpha OS=Danio rerio GN=nrxn3... 33 9.2
tr|Q7PSY9|Q7PSY9_ANOGA AGAP005288-PA OS=Anopheles gambiae GN=AGA... 33 9.2
tr|B0W980|B0W980_CULQU Putative uncharacterized protein OS=Culex... 33 9.2

>tr|B8E2R9|B8E2R9_9BACT ATP-dependent DNA helicase RecG
OS=Dictyoglomus turgidum DSM 6724 GN=Dtur_1140 PE=4 SV=1
Length = 779

Score = 35.4 bits (80), Expect = 1.4
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = -2

Query: 328 KQLPSPA*FLLMKIVKILKDSHEVVYLRKMQRVWTPQDVMERMLWKLHGRWLWKQNKR-S 152
KQ P F K++ ++KD + Y + Q V +D++ER + W+++ + +
Sbjct: 41 KQFPLWNGFWTQKVLDLIKDYSKRTYEERAQAVVRIKDIIERAIEFYTDENFWEKSVQFA 100

Query: 151 RSIAHQRCKMLNRLALVLISRLV 83
+ + R K+LNRL + I L+
Sbjct: 101 KGVGPHRAKLLNRLEIHTIYDLI 123


>tr|Q9LK12|Q9LK12_ARATH Similarity to mismatch repair protein MutS
OS=Arabidopsis thaliana PE=3 SV=1
Length = 1016

Score = 33.9 bits (76), Expect = 4.1
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -1

Query: 389 DEKENMLVGNSIATSLIGQCQTASESGLVSVDEDCEDSERQPRGCVSPKDAKGVDSSGCY 210
D K + V S S++ Q A+ LV +DE C +E C++ + +D+SGC
Sbjct: 717 DGKSSFQVEMSEIRSIVSQ---ATSRSLVLIDEICRGTETAKGTCIAGSVVESLDTSGCL 773

Query: 209 G 207
G
Sbjct: 774 G 774


>tr|Q84LK0|Q84LK0_ARATH DNA mismatch repair protein OS=Arabidopsis
thaliana GN=MSH1 PE=2 SV=1
Length = 1118

Score = 33.9 bits (76), Expect = 4.1
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -1

Query: 389 DEKENMLVGNSIATSLIGQCQTASESGLVSVDEDCEDSERQPRGCVSPKDAKGVDSSGCY 210
D K + V S S++ Q A+ LV +DE C +E C++ + +D+SGC
Sbjct: 819 DGKSSFQVEMSEIRSIVSQ---ATSRSLVLIDEICRGTETAKGTCIAGSVVESLDTSGCL 875

Query: 209 G 207
G
Sbjct: 876 G 876


>tr|Q67IV4|Q67IV4_ORYSJ Putative uncharacterized protein
OSJNBa0048L03.35 OS=Oryza sativa subsp. japonica
GN=OSJNBa0048L03.35 PE=4 SV=1
Length = 529

Score = 33.5 bits (75), Expect = 5.4
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = -1

Query: 203 DALEIARQVAMEAEQEVEKYRTPEVQDAKSASLSVDIPTCENAHSLSIRISSGNTDGRTD 24
DALE+AR VA+E E+EV YR P S D P E + + D ++
Sbjct: 33 DALEVARLVAIEVEREVIDYRGPFCGSPDINSRRSDSPDLEARRQPEPPMDEPDNDNKSS 92

Query: 23 T 21
T
Sbjct: 93 T 93


>tr|Q0DAT5|Q0DAT5_ORYSJ Os06g0631300 protein OS=Oryza sativa subsp.
japonica GN=Os06g0631300 PE=4 SV=1
Length = 900

Score = 33.5 bits (75), Expect = 5.4
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = -1

Query: 203 DALEIARQVAMEAEQEVEKYRTPEVQDAKSASLSVDIPTCENAHSLSIRISSGNTDGRTD 24
DALE+AR VA+E E+EV YR P S D P E + + D ++
Sbjct: 404 DALEVARLVAIEVEREVIDYRGPFCGSPDINSRRSDSPDLEARRQPEPPMDEPDNDNKSS 463

Query: 23 T 21
T
Sbjct: 464 T 464


>tr|Q010R6|Q010R6_OSTTA Nucleolar protein involved in 40S ribosome
biogenesis (ISS) OS=Ostreococcus tauri GN=Ot10g00090
PE=4 SV=1
Length = 954

Score = 33.5 bits (75), Expect = 5.4
Identities = 21/69 (30%), Positives = 28/69 (40%)
Frame = -1

Query: 296 DEDCEDSERQPRGCVSPKDAKGVDSSGCYGEDALEIARQVAMEAEQEVEKYRTPEVQDAK 117
D+D ED + D D +G E EIA A + +K TP +
Sbjct: 440 DKDTEDEDEDDEDAEDEDDVVENDHAGVLRELEEEIAGNAASREGKNPDKKETPRHEAKS 499

Query: 116 SASLSVDIP 90
S S+ VDIP
Sbjct: 500 SESMRVDIP 508


>tr|A9RVG3|A9RVG3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_161278 PE=4 SV=1
Length = 1651

Score = 33.5 bits (75), Expect = 5.4
Identities = 27/60 (45%), Positives = 31/60 (51%)
Frame = -1

Query: 251 SPKDAKGVDSSGCYGEDALEIARQVAMEAEQEVEKYRTPEVQDAKSASLSVDIPTCENAH 72
S DA + G ED LE+ARQ A E EQ +EKY P S+SLS D EN H
Sbjct: 891 SESDAHRIADLGFPEEDVLEVARQAADEVEQ-MEKYGKP-----VSSSLS-DRDAHENRH 943


>tr|A2YFA4|A2YFA4_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_23793 PE=4 SV=1
Length = 900

Score = 33.5 bits (75), Expect = 5.4
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = -1

Query: 203 DALEIARQVAMEAEQEVEKYRTPEVQDAKSASLSVDIPTCENAHSLSIRISSGNTDGRTD 24
DALE+AR VA+E E+EV YR P S D P E + + D ++
Sbjct: 404 DALEVARLVAIEVEREVIDYRGPFCGSPDINSRRSDSPDLEARRQPEPPMDEPDNDNKSS 463

Query: 23 T 21
T
Sbjct: 464 T 464


>tr|B6M1G0|B6M1G0_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_121538 PE=4 SV=1
Length = 1465

Score = 33.5 bits (75), Expect = 5.4
Identities = 26/108 (24%), Positives = 45/108 (41%)
Frame = -1

Query: 353 ATSLIGQCQTASESGLVSVDEDCEDSERQPRGCVSPKDAKGVDSSGCYGEDALEIARQVA 174
+TSL T+ + GLV DEDC+DS+ + + S E +++
Sbjct: 1207 STSLQRGAGTSQKRGLVDTDEDCQDSDVSGSNKRTRRQKVLQSSDDSQDEKVQVTSKRPR 1266

Query: 173 MEAEQEVEKYRTPEVQDAKSASLSVDIPTCENAHSLSIRISSGNTDGR 30
+ E+ +V+ AK+ + V P E + I++ S D R
Sbjct: 1267 KAVIESSEESSASDVKSAKTKAKEVKKP--ERTSTSQIKVISATKDNR 1312


>tr|B4PK67|B4PK67_DROYA GE20417 OS=Drosophila yakuba GN=GE20417 PE=4
SV=1
Length = 473

Score = 33.5 bits (75), Expect = 5.4
Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 4/134 (2%)
Frame = -1

Query: 398 TVRDEKENMLVGNSIATSLIGQCQTASESGLVSVDEDCEDSERQPRGCVSPKDAKGVDS- 222
T E E + T + + + +V+ DED D ++Q KDA+ D+
Sbjct: 203 TAEAEGEKQEESEKVDTKEESEVEGTKDDEVVNGDEDVADDDKQSENDKDDKDAESEDAK 262

Query: 221 --SGCYGEDALE-IARQVAMEAEQEVEKYRTPEVQDAKSASLSVDIPTCENAHSLSIRIS 51
ED + +A + E ++V+ EV +A + S D+ E + + S +
Sbjct: 263 DDKDAKSEDVKDKLAENESTETSEDVDTTEKSEV-EATNEEKSEDVDAAEKSEAESTKDD 321

Query: 50 SGNTDGRTDTAQVS 9
T++++V+
Sbjct: 322 DDEKAEETESSKVN 335