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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920851
Clone id YMU001_000142_E03
Library
Length 405
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000142_E03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGAGGCAGGAAGCAGCAAATCATTAGAAGTACCTCTAAAACCTTACTTTTTTGTGCCTCC
TCCTTTACCTTCATCTCAACCTACCTTTCTCCATCCTCCCCCTCCATTGCAGCCGTCAGT
TGGTGCTCCTCTTCTGCAGCCATTCCCTCCACCTGTGCCATCACCATCTCTGACACCAAA
TTCCGTGTAGCCAAGTAAGCCAGTTATTAGTAGGGAAGGAGTCCGTGATGCTCTCTTCCG
ACTTGTGCAGAATGATACATTCATCGACATGGTCTTTGAGGAGATGTTGAAGGCACAAAG
GCTACCAGCCTAGTTTAAGGTGTCACTCGTACGTTTGGTGCGGGCTTCGCTCAGTTTTGA
CGCTTTCATGTATATTGGTACCTTGCTAAGCTGTATACTTCTATG
■■Homology search results ■■ -
sp_hit_id Q9SJF3
Definition sp|Q9SJF3|DCP1_ARATH mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana
Align length 32
Score (bit) 32.7
E-value 0.57
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920851|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_E03.
         (405 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SJF3|DCP1_ARATH mRNA-decapping enzyme-like protein OS=Arabi...    33   0.57 
sp|Q22811|HM21_CAEEL Homeobox protein ceh-21 OS=Caenorhabditis e...    32   0.74 
sp|P20236|GBRA3_RAT Gamma-aminobutyric acid receptor subunit alp...    32   1.3  
sp|Q9H098|F107B_HUMAN Protein FAM107B OS=Homo sapiens GN=FAM107B...    30   4.8  
sp|B1YHD4|T23O_EXIS2 Tryptophan 2,3-dioxygenase OS=Exiguobacteri...    29   6.3  
sp|Q5U4F3|F107B_RAT Protein FAM107B OS=Rattus norvegicus GN=Fam1...    29   6.3  
sp|Q3TGF2|F107B_MOUSE Protein FAM107B OS=Mus musculus GN=Fam107b...    29   6.3  
sp|Q86X51|YX003_HUMAN Uncharacterized protein LOC340602 OS=Homo ...    29   8.2  
sp|P20525|YVAP_VACCC Uncharacterized 9.9 kDa protein OS=Vaccinia...    29   8.2  

>sp|Q9SJF3|DCP1_ARATH mRNA-decapping enzyme-like protein
           OS=Arabidopsis thaliana GN=At1g08370 PE=2 SV=2
          Length = 367

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 200 PVISREGVRDALFRLVQNDTFIDMVFEEMLKA 295
           PVISR+ V++AL  L+Q D FID +   +  A
Sbjct: 333 PVISRDKVKEALLSLLQEDEFIDKITRTLQNA 364


>sp|Q22811|HM21_CAEEL Homeobox protein ceh-21 OS=Caenorhabditis
           elegans GN=ceh-21 PE=2 SV=3
          Length = 495

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -1

Query: 351 SEARTKRTSDTLN*AGSLCAFNISSKTMSMNVSFCTSRKRASRTPSL 211
           S+A TKR S T   A S C  ++SS +   +  +   + RA+ TP L
Sbjct: 203 SKAATKRQSSTTVRASSTCGSSVSSTSTVSSPDYTAKKGRATETPKL 249


>sp|P20236|GBRA3_RAT Gamma-aminobutyric acid receptor subunit
           alpha-3 OS=Rattus norvegicus GN=Gabra3 PE=2 SV=1
          Length = 493

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -1

Query: 384 KVPIYMKASKLSEAR-TKRTSDTLN*AGSLCAFNISSKTMSMNVSFCTSRKRASRTPSLL 208
           KVP  ++  K + A  TK+TS T N  G+    N++  T    +S   +   AS TP+++
Sbjct: 373 KVPEALEMKKKTPAAPTKKTSTTFNIVGTTYPINLALDTEFSTISKAAAAPSASSTPTVI 432

Query: 207 ITGLLGYTE 181
            +    Y +
Sbjct: 433 ASPKTTYVQ 441


>sp|Q9H098|F107B_HUMAN Protein FAM107B OS=Homo sapiens GN=FAM107B
           PE=2 SV=1
          Length = 131

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = -2

Query: 185 RNLVSEMVMAQVEGMAAEEEHQLTAAMEGEDGER*VEMKVKEEAQKSKVLEVLLM 21
           ++L  E++M Q  G+A + + +L   ME    ++ ++ K +E  +K   LE+ L+
Sbjct: 31  QDLHRELLMNQKRGLAPQNKPELQKVMEKRKRDQVIKQKEEEAQKKKSDLEIELL 85


>sp|B1YHD4|T23O_EXIS2 Tryptophan 2,3-dioxygenase OS=Exiguobacterium
           sibiricum (strain DSM 17290 / JCM 13490 / 255-15)
           GN=kynA PE=3 SV=1
          Length = 279

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -3

Query: 379 TNIHESVKTERSPHQTYE*HLKLGW*PLCLQHLLKDHVDEC--IILHKSEE 233
           TNI ES++T+     +Y  +L+L    L  Q  L DH DE   I++H++ E
Sbjct: 7   TNIEESIQTDFKKDMSYGDYLQLDS-LLTSQQRLSDHHDEMLFIVIHQTSE 56


>sp|Q5U4F3|F107B_RAT Protein FAM107B OS=Rattus norvegicus GN=Fam107b
           PE=2 SV=1
          Length = 131

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = -2

Query: 185 RNLVSEMVMAQVEGMAAEEEHQLTAAMEGEDGER*VEMKVKEEAQKSKVLEVLLM 21
           ++L  E++M Q  G+A + + +L   ME    ++ ++ K +E  +K   LE+ L+
Sbjct: 31  QDLHRELLMNQKRGLAPQNKPELQKVMEKRRRDQVIKQKEEEAQKKKSDLEIELL 85


>sp|Q3TGF2|F107B_MOUSE Protein FAM107B OS=Mus musculus GN=Fam107b
           PE=2 SV=2
          Length = 131

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = -2

Query: 185 RNLVSEMVMAQVEGMAAEEEHQLTAAMEGEDGER*VEMKVKEEAQKSKVLEVLLM 21
           ++L  E++M Q  G+A + + +L   ME    ++ ++ K +E  +K   LE+ L+
Sbjct: 31  QDLHRELLMNQKRGLAPQNKPELQKVMEKRRRDQVIKQKEEEAQKKKSDLEIELL 85


>sp|Q86X51|YX003_HUMAN Uncharacterized protein LOC340602 OS=Homo
           sapiens PE=2 SV=1
          Length = 503

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +1

Query: 55  ASSFTFISTYLSPSSPSIAAVSWCSSSAAIPSTCAITISD 174
           A+S T +S+  SPS  +  + S   SSAA  ++ AI I+D
Sbjct: 42  AASVTTVSSQASPSGGAALSSSTAGSSAAAATSAAIFITD 81


>sp|P20525|YVAP_VACCC Uncharacterized 9.9 kDa protein OS=Vaccinia
           virus (strain Copenhagen) GN=A ORF P PE=4 SV=1
          Length = 89

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = +1

Query: 52  CASSFTFISTYLSPSSPSIAAVSW------CSSSAAIPSTCAITISDTKFRVAK 195
           C+ SF+FIS +L+P  PS   + W       SSS    S  +  + +T F   K
Sbjct: 9   CSFSFSFISNHLTPDGPS--KIGWLDKGFIISSSTLYFSMTSNVVCETTFPAGK 60
tr_hit_id Q7XHS7
Definition tr|Q7XHS7|Q7XHS7_ORYSJ Os07g0249600 protein OS=Oryza sativa subsp. japonica
Align length 31
Score (bit) 47.4
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920851|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_E03.
         (405 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7XHS7|Q7XHS7_ORYSJ Os07g0249600 protein OS=Oryza sativa subs...    47   4e-04
tr|A2YJX0|A2YJX0_ORYSI Putative uncharacterized protein OS=Oryza...    47   4e-04
tr|B8LQS3|B8LQS3_PICSI Putative uncharacterized protein OS=Picea...    46   0.001
tr|Q53QH1|Q53QH1_ORYSJ mRNA decapping enzyme, putative, expresse...    44   0.004
tr|Q2QXH6|Q2QXH6_ORYSJ Os12g0156400 protein OS=Oryza sativa subs...    44   0.004
tr|B8BN98|B8BN98_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.004
tr|B8BJ62|B8BJ62_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.004
tr|B6UBI1|B6UBI1_MAIZE Dcp1-like decapping family protein OS=Zea...    44   0.004
tr|B4FIG5|B4FIG5_MAIZE Putative uncharacterized protein OS=Zea m...    44   0.004
tr|A3C8R8|A3C8R8_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.004
tr|B6T785|B6T785_MAIZE Dcp1-like decapping family protein OS=Zea...    43   0.007
tr|B4FJC9|B4FJC9_MAIZE Putative uncharacterized protein OS=Zea m...    43   0.007
tr|Q38JI6|Q38JI6_SOLTU Putative uncharacterized protein OS=Solan...    42   0.020
tr|Q10AY3|Q10AY3_ORYSJ cDNA clone:J013148J04, full insert sequen...    42   0.020
tr|Q0DLZ5|Q0DLZ5_ORYSJ Os03g0837000 protein (Fragment) OS=Oryza ...    42   0.020
tr|B8AN96|B8AN96_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.020
tr|A9S7I6|A9S7I6_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.026
tr|A9PI85|A9PI85_POPTR Putative uncharacterized protein OS=Popul...    40   0.059
tr|B6TBF0|B6TBF0_MAIZE Dcp1-like decapping family protein OS=Zea...    39   0.10 
tr|B4FW43|B4FW43_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.10 
tr|A9PE94|A9PE94_POPTR Putative uncharacterized protein OS=Popul...    39   0.13 
tr|A7QF74|A7QF74_VITVI Chromosome undetermined scaffold_87, whol...    38   0.29 
tr|A7PP94|A7PP94_VITVI Chromosome chr8 scaffold_23, whole genome...    37   0.38 
tr|B4FT08|B4FT08_MAIZE Dcp1-like decapping family protein OS=Zea...    34   3.2  
tr|B6KCF6|B6KCF6_TOXGO Putative uncharacterized protein OS=Toxop...    33   7.2  
tr|A9TRE6|A9TRE6_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.2  
tr|Q8A1R6|Q8A1R6_BACTN Putative hydrolase lipoprotein OS=Bactero...    33   9.4  

>tr|Q7XHS7|Q7XHS7_ORYSJ Os07g0249600 protein OS=Oryza sativa subsp.
           japonica GN=P0021G06.113 PE=2 SV=1
          Length = 382

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 21/31 (67%), Positives = 27/31 (87%)
 Frame = +2

Query: 200 PVISREGVRDALFRLVQNDTFIDMVFEEMLK 292
           PV+SRE VRDAL RLV+ND FID+V+ E++K
Sbjct: 351 PVLSREKVRDALLRLVENDDFIDLVYREIVK 381


>tr|A2YJX0|A2YJX0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_25526 PE=4 SV=1
          Length = 382

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 21/31 (67%), Positives = 27/31 (87%)
 Frame = +2

Query: 200 PVISREGVRDALFRLVQNDTFIDMVFEEMLK 292
           PV+SRE VRDAL RLV+ND FID+V+ E++K
Sbjct: 351 PVLSREKVRDALLRLVENDDFIDLVYREIVK 381


>tr|B8LQS3|B8LQS3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 368

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 21/32 (65%), Positives = 26/32 (81%)
 Frame = +2

Query: 200 PVISREGVRDALFRLVQNDTFIDMVFEEMLKA 295
           P+I+R+ VRD L RLVQN+ FIDMV+ EML A
Sbjct: 334 PIITRDKVRDTLARLVQNEHFIDMVYREMLNA 365


>tr|Q53QH1|Q53QH1_ORYSJ mRNA decapping enzyme, putative, expressed
           OS=Oryza sativa subsp. japonica GN=LOC_Os11g05650 PE=4
           SV=1
          Length = 380

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = +2

Query: 200 PVISREGVRDALFRLVQNDTFIDMVFEEMLKA 295
           P+ISR+ V++AL RLVQND FID+V+ E+  A
Sbjct: 347 PIISRDKVKEALLRLVQNDQFIDLVYRELQNA 378


>tr|Q2QXH6|Q2QXH6_ORYSJ Os12g0156400 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0156400 PE=2 SV=2
          Length = 374

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 19/33 (57%), Positives = 28/33 (84%)
 Frame = +2

Query: 197 KPVISREGVRDALFRLVQNDTFIDMVFEEMLKA 295
           +PVISR+ V+DAL RLVQND FI+++++E+  A
Sbjct: 340 EPVISRDKVKDALLRLVQNDEFINLLYQELQNA 372


>tr|B8BN98|B8BN98_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37531 PE=4 SV=1
          Length = 374

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 19/33 (57%), Positives = 28/33 (84%)
 Frame = +2

Query: 197 KPVISREGVRDALFRLVQNDTFIDMVFEEMLKA 295
           +PVISR+ V+DAL RLVQND FI+++++E+  A
Sbjct: 340 EPVISRDKVKDALLRLVQNDEFINLLYQELQNA 372


>tr|B8BJ62|B8BJ62_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_35166 PE=4 SV=1
          Length = 332

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = +2

Query: 200 PVISREGVRDALFRLVQNDTFIDMVFEEMLKA 295
           P+ISR+ V++AL RLVQND FID+V+ E+  A
Sbjct: 299 PIISRDKVKEALLRLVQNDQFIDLVYRELQNA 330


>tr|B6UBI1|B6UBI1_MAIZE Dcp1-like decapping family protein OS=Zea
           mays PE=2 SV=1
          Length = 382

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 19/33 (57%), Positives = 26/33 (78%)
 Frame = +2

Query: 200 PVISREGVRDALFRLVQNDTFIDMVFEEMLKAQ 298
           P +SR+ VRDAL RLV+ND FID+V+ E++  Q
Sbjct: 350 PALSRDKVRDALLRLVENDEFIDLVYGEIMNRQ 382


>tr|B4FIG5|B4FIG5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 382

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 19/33 (57%), Positives = 26/33 (78%)
 Frame = +2

Query: 200 PVISREGVRDALFRLVQNDTFIDMVFEEMLKAQ 298
           P +SR+ VRDAL RLV+ND FID+V+ E++  Q
Sbjct: 350 PALSRDKVRDALLRLVENDEFIDLVYGEIMNRQ 382


>tr|A3C8R8|A3C8R8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_031690 PE=4 SV=1
          Length = 334

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = +2

Query: 200 PVISREGVRDALFRLVQNDTFIDMVFEEMLKA 295
           P+ISR+ V++AL RLVQND FID+V+ E+  A
Sbjct: 301 PIISRDKVKEALLRLVQNDQFIDLVYRELQNA 332