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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920853
Clone id YMU001_000142_E05
Library
Length 452
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000142_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CACAAAGATTGCTGGACCACTTGTGTATTACTTTGTCCTTCAATTGAAAGATGGAAAGGA
CAGACCTTCTTTGGGCTATGCAACTAGCAGATTCTCCCTTCCAACAATTACCACGCTACA
ATAGCATACAATCAATTTACAAATAAGCACATTTTTATGACATGGTCATAAGGGTCAAGC
AACCACAGAAACTCTTATCTGAATCTTCCTTCCTCAGTACGACCAAGCTTACAATCTGCT
CATGGCGCGCTTTGGGCCACCGGCAACCGACGGTCGCTGATTTATGCTATAGCATCAAAA
CCTATGCGAATGTAAGTCGGCAATGTATATTCGCATTGACTTGCTAAGCCCTCTCCCAAA
TCAAGTGATCTGGCTACAATAATCATATGCCCTCCATATTCTACAGGCAACCCATTCTCT
ACTTTAAAAGATAGTTCTAAATTTTGCGAACG
■■Homology search results ■■ -
sp_hit_id Q1IZ02
Definition sp|Q1IZ02|IF2_DEIGD Translation initiation factor IF-2 OS=Deinococcus geothermalis (strain DSM 11300)
Align length 30
Score (bit) 30.4
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920853|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_E05.
         (452 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1IZ02|IF2_DEIGD Translation initiation factor IF-2 OS=Deinoc...    30   3.7  
sp|Q9RTG5|IF2_DEIRA Translation initiation factor IF-2 OS=Deinoc...    30   4.8  
sp|P54697|MYOJ_DICDI Myosin IJ heavy chain OS=Dictyostelium disc...    30   6.3  

>sp|Q1IZ02|IF2_DEIGD Translation initiation factor IF-2
           OS=Deinococcus geothermalis (strain DSM 11300) GN=infB
           PE=3 SV=1
          Length = 601

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 416 NGLPVEYGGHMIIVARSLDLGEGLASQCEY 327
           N +P EYGG +I+V  S   GEG+    EY
Sbjct: 233 NLVPEEYGGDLIVVPVSAKTGEGVEDLLEY 262


>sp|Q9RTG5|IF2_DEIRA Translation initiation factor IF-2
           OS=Deinococcus radiodurans GN=infB PE=3 SV=1
          Length = 597

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 416 NGLPVEYGGHMIIVARSLDLGEGLASQCEY 327
           N +P EYGG +I+V  S   GEG+    EY
Sbjct: 227 NLVPEEYGGDVIVVPVSAKTGEGVEDLLEY 256


>sp|P54697|MYOJ_DICDI Myosin IJ heavy chain OS=Dictyostelium
            discoideum GN=myoJ PE=4 SV=2
          Length = 2245

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 112  GNCWKGESASCIAQRRSVLSIFQLKDK 32
            GN W G+ A+   Q R V+++  +KDK
Sbjct: 2110 GNVWVGDVANAFQQVREVINVLNIKDK 2136
tr_hit_id A3W825
Definition tr|A3W825|A3W825_9RHOB Autoinducer-binding transcriptional regulator LuxR OS=Roseovarius sp. 217
Align length 68
Score (bit) 34.7
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920853|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_E05.
         (452 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3W825|A3W825_9RHOB Autoinducer-binding transcriptional regul...    35   2.5  
tr|A6E3S8|A6E3S8_9RHOB Autoinducer-binding transcriptional regul...    33   5.5  
tr|A4CWA6|A4CWA6_SYNPV Possible glycosyltransferase OS=Synechoco...    33   7.1  

>tr|A3W825|A3W825_9RHOB Autoinducer-binding transcriptional
           regulator LuxR OS=Roseovarius sp. 217 GN=ROS217_18272
           PE=4 SV=1
          Length = 224

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
 Frame = +3

Query: 150 HFYDMVIRVKQPQKLLSESSFLSTTKLTICSWRALGHRQPTVADLC----YSIKTYANVS 317
           H +DMVI+     ++L+  S LST ++ I  W A G  Q  + D+      +++ +   +
Sbjct: 141 HMHDMVIQADPLTRMLNSPS-LSTREIEILQWTAAGKSQQDIGDILSISHRTVEVHLRSA 199

Query: 318 RQCIFALT 341
           RQ + ALT
Sbjct: 200 RQKLNALT 207


>tr|A6E3S8|A6E3S8_9RHOB Autoinducer-binding transcriptional
           regulator LuxR OS=Roseovarius sp. TM1035
           GN=RTM1035_10475 PE=4 SV=1
          Length = 224

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
 Frame = +3

Query: 150 HFYDMVIRVKQPQKLLSESSFLSTTKLTICSWRALGHRQPTVADLC----YSIKTYANVS 317
           H +DMVI+     ++L+  S LST ++ I  W A G  Q  + D+      +++ +   +
Sbjct: 141 HMHDMVIQSDPLTRMLNTPS-LSTREIEILQWTAAGKSQQDIGDILSISHRTVEVHLRSA 199

Query: 318 RQCIFALT 341
           RQ + ALT
Sbjct: 200 RQKLNALT 207


>tr|A4CWA6|A4CWA6_SYNPV Possible glycosyltransferase
           OS=Synechococcus sp. (strain WH7805) GN=WH7805_05776
           PE=4 SV=1
          Length = 573

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
 Frame = +3

Query: 54  ERTDLLWAMQLADSPFQ-QLP-RYNSIQSIYK*AHFYDMVIRVKQPQKLLSES-SFLSTT 224
           ER D +W + + D   Q +LP +Y SI ++     + D++ R+K PQK+L E  S+LS  
Sbjct: 64  ERLDQVWCIDIEDMKIQFELPEKYPSIDALI----YGDVLERLKDPQKILREHVSWLSPD 119

Query: 225 KLTICS 242
            + + S
Sbjct: 120 GVVVAS 125