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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920858
Clone id YMU001_000142_E11
Library
Length 518
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000142_E11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAGTGGACACTTTTGGACATAATTGTTCAGATCTCTTGGCACAAATCTATTGTTTAGCTT
AGCCTATCACCCTACGTTCACTGGACACTTTTGGACATCATTGTTCCAGTCTCTTTGCTA
GCTTTCAAAATCCAATTTCAGGATAAGGAGGGAAATGCCTAGGATTCCAAATTGATCAAA
GCTTGTGAGTCACGGCTCCACTAAGACCCATAAGTTTATCATTTTGTTTTCATGGGCAAC
TTTGAGTCTCCAAAATTGGCATCTAAGGTTGGTTGCACACTGTAGCCTTACTCATGGCTT
CAATCTTCACCCCTATAGTTCAAACCCACATCACCCAAAAGGTAATTGACTTCTCATTCA
AGCTTCAAAAGCCCTCATCTCAATGAGACTTCTTATTGTCCTTCTCTTTGGGTGTGACTA
TGATCCACTAGTATGTGTATATCAGTGATTATTGCCACAACACATTCACCATTGTCAAAG
GCGCACTTAGTCCATTCTTATTCATGATCAGACTATAC
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920858|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_E11.
         (518 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id Q9M6S7
Definition tr|Q9M6S7|Q9M6S7_PICAB Pol protein integrase region (Fragment) OS=Picea abies
Align length 28
Score (bit) 37.7
E-value 0.35
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920858|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_E11.
         (518 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9M6S7|Q9M6S7_PICAB Pol protein integrase region (Fragment) O...    38   0.35 
tr|Q9M6T3|Q9M6T3_ABIAL Pol protein integrase region (Fragment) O...    37   0.45 
tr|Q9M6T1|Q9M6T1_ABIAL Pol protein integrase region (Fragment) O...    37   0.45 
tr|Q9M6S9|Q9M6S9_PICAB Pol protein integrase region (Fragment) O...    37   0.45 
tr|Q9M6P3|Q9M6P3_PICAB Pol protein (Fragment) OS=Picea abies GN=...    37   0.45 
tr|Q9ARL0|Q9ARL0_GINBI Pol protein integrase region (Fragment) O...    37   0.45 
tr|Q94CJ1|Q94CJ1_CEDAT Pol protein integrase region (Fragment) O...    37   0.45 
tr|Q94CJ0|Q94CJ0_LARDC Pol protein integrase region (Fragment) O...    37   0.45 
tr|Q9M6T4|Q9M6T4_ABIAL Pol protein integrase region (Fragment) O...    37   0.59 
tr|Q9ARK9|Q9ARK9_GINBI Pol protein integrase region (Fragment) O...    36   1.0  
tr|Q6UUM9|Q6UUM9_ORYSJ Putative gag-pol polyprotein OS=Oryza sat...    36   1.0  
tr|Q94BM2|Q94BM2_HORVU Gag-pol polyprotein OS=Hordeum vulgare PE...    36   1.3  
tr|Q94BM1|Q94BM1_HORVU Gag-pol polyprotein OS=Hordeum vulgare PE...    36   1.3  
tr|Q9M6P1|Q9M6P1_PICAB Pol protein (Fragment) OS=Picea abies GN=...    35   1.7  
tr|A5C0Y9|A5C0Y9_VITVI Putative uncharacterized protein OS=Vitis...    35   1.7  
tr|B6QN21|B6QN21_PENMA Putative uncharacterized protein OS=Penic...    35   2.2  
tr|Q9M6T5|Q9M6T5_ABIAL Pol protein integrase region (Fragment) O...    35   2.9  
tr|Q9M6N5|Q9M6N5_9CONI Pol protein integrase region (Fragment) O...    35   2.9  
tr|Q9M6N3|Q9M6N3_9CONI Pol protein integrase region (Fragment) O...    35   2.9  
tr|Q53JW9|Q53JW9_ORYSJ Retrotransposon protein, putative, Ty3-gy...    35   2.9  
tr|Q9ZS84|Q9ZS84_SOLLC Polyprotein OS=Solanum lycopersicum PE=4 ...    34   3.8  
tr|Q8SB42|Q8SB42_ORYSJ Putative polyprotein OS=Oryza sativa subs...    34   3.8  
tr|Q338U6|Q338U6_ORYSJ Retrotransposon protein, putative, Ty3-gy...    34   3.8  
tr|Q2QWR9|Q2QWR9_ORYSJ Retrotransposon protein, putative, Ty3-gy...    34   3.8  
tr|Q9XE85|Q9XE85_SORBI Polyprotein OS=Sorghum bicolor PE=4 SV=1        34   5.0  
tr|Q9SLQ0|Q9SLQ0_ORYSI Gag-pol polyprotein (Fragment) OS=Oryza s...    34   5.0  
tr|Q93WG4|Q93WG4_ORYSA Putative retroelement OS=Oryza sativa GN=...    34   5.0  
tr|Q7XK65|Q7XK65_ORYSJ OSJNBa0028M15.22 protein OS=Oryza sativa ...    34   5.0  
tr|Q7XFI5|Q7XFI5_ORYSJ Retrotransposon protein, putative, Ty3-gy...    34   5.0  
tr|Q6VPE6|Q6VPE6_PETHY Putative integrase OS=Petunia hybrida PE=...    34   5.0  

>tr|Q9M6S7|Q9M6S7_PICAB Pol protein integrase region (Fragment)
           OS=Picea abies GN=pol PE=4 SV=1
          Length = 131

 Score = 37.7 bits (86), Expect = 0.35
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = +2

Query: 2   SGHFWT*LFRSLGTNLLFSLAYHPTFTG 85
           +GHFWT LF  LGT L  S +YHP   G
Sbjct: 72  TGHFWTKLFSCLGTQLAHSSSYHPQSNG 99


>tr|Q9M6T3|Q9M6T3_ABIAL Pol protein integrase region (Fragment)
           OS=Abies alba GN=pol PE=4 SV=1
          Length = 131

 Score = 37.4 bits (85), Expect = 0.45
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = +2

Query: 2   SGHFWT*LFRSLGTNLLFSLAYHPTFTG 85
           +GHFWT LF  LGT L  S +YHP   G
Sbjct: 72  TGHFWTELFSCLGTQLAHSSSYHPQSDG 99


>tr|Q9M6T1|Q9M6T1_ABIAL Pol protein integrase region (Fragment)
           OS=Abies alba GN=pol PE=4 SV=1
          Length = 131

 Score = 37.4 bits (85), Expect = 0.45
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = +2

Query: 2   SGHFWT*LFRSLGTNLLFSLAYHPTFTG 85
           +GHFWT LF  LGT L  S +YHP   G
Sbjct: 72  TGHFWTELFSCLGTQLAHSSSYHPQSDG 99


>tr|Q9M6S9|Q9M6S9_PICAB Pol protein integrase region (Fragment)
           OS=Picea abies GN=pol PE=4 SV=1
          Length = 131

 Score = 37.4 bits (85), Expect = 0.45
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = +2

Query: 2   SGHFWT*LFRSLGTNLLFSLAYHPTFTG 85
           +GHFWT LF  LGT L  S +YHP   G
Sbjct: 72  TGHFWTKLFSCLGTQLAHSSSYHPQSDG 99


>tr|Q9M6P3|Q9M6P3_PICAB Pol protein (Fragment) OS=Picea abies GN=pol
           PE=4 SV=1
          Length = 87

 Score = 37.4 bits (85), Expect = 0.45
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = +2

Query: 2   SGHFWT*LFRSLGTNLLFSLAYHPTFTG 85
           +GHFWT LF  LGT L  S +YHP   G
Sbjct: 28  TGHFWTKLFSCLGTQLAHSSSYHPQSDG 55


>tr|Q9ARL0|Q9ARL0_GINBI Pol protein integrase region (Fragment)
           OS=Ginkgo biloba GN=pol PE=4 SV=1
          Length = 118

 Score = 37.4 bits (85), Expect = 0.45
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = +2

Query: 2   SGHFWT*LFRSLGTNLLFSLAYHPTFTG 85
           +GHFWT LF  LGT L  S +YHP   G
Sbjct: 65  TGHFWTELFSCLGTQLAHSSSYHPESDG 92


>tr|Q94CJ1|Q94CJ1_CEDAT Pol protein integrase region (Fragment)
           OS=Cedrus atlantica GN=pol PE=4 SV=1
          Length = 118

 Score = 37.4 bits (85), Expect = 0.45
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = +2

Query: 2   SGHFWT*LFRSLGTNLLFSLAYHPTFTG 85
           +GHFWT LF  LGT L  S +YHP   G
Sbjct: 65  TGHFWTELFSCLGTQLAHSSSYHPQSDG 92


>tr|Q94CJ0|Q94CJ0_LARDC Pol protein integrase region (Fragment)
           OS=Larix decidua GN=pol PE=4 SV=1
          Length = 118

 Score = 37.4 bits (85), Expect = 0.45
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = +2

Query: 2   SGHFWT*LFRSLGTNLLFSLAYHPTFTG 85
           +GHFWT LF  LGT L  S +YHP   G
Sbjct: 65  TGHFWTELFSCLGTQLAHSSSYHPQSDG 92


>tr|Q9M6T4|Q9M6T4_ABIAL Pol protein integrase region (Fragment)
           OS=Abies alba GN=pol PE=4 SV=1
          Length = 123

 Score = 37.0 bits (84), Expect = 0.59
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +2

Query: 5   GHFWT*LFRSLGTNLLFSLAYHPTF 79
           GHFWT LF  LGT L  + +YHP F
Sbjct: 65  GHFWTELFSCLGTQLAHNSSYHPQF 89


>tr|Q9ARK9|Q9ARK9_GINBI Pol protein integrase region (Fragment)
           OS=Ginkgo biloba GN=pol PE=4 SV=1
          Length = 118

 Score = 36.2 bits (82), Expect = 1.0
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +2

Query: 2   SGHFWT*LFRSLGTNLLFSLAYHPTFTG 85
           +GHFWT LF  LGT L  + +YHP   G
Sbjct: 65  TGHFWTELFSCLGTQLAHTSSYHPQSDG 92